Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g066300 Amaranthus hybridus HOM05D005379 ORTHO05D006661 4.4e-59 231.1 118 100.0
Ah.13g071160 Amaranthus hybridus HOM05D005379 ORTHO05D006661 1.7e-58 229.2 117 99.1
EL10Ac3g05878 Beta vulgaris HOM05D005379 ORTHO05D006661 2.3e-36 155.6 119 70.6
Hund11852 Selenicereus undatus HOM05D005379 ORTHO05D006661 8.9e-36 153.7 119 68.1
AUR62015453 Chenopodium quinoa HOM05D005379 ORTHO05D006661 7.8e-32 140.6 119 63.9
AUR62002241 Chenopodium quinoa HOM05D005379 ORTHO05D006661 1.7e-31 139.4 119 63.9
Hund04565 Selenicereus undatus HOM05D005379 ORTHO05D006661 3.0e-31 138.7 119 61.3
Sc18g0007310 Simmondsia chinensis HOM05D005379 ORTHO05D006661 6.0e-24 114.4 119 53.8
Cfa013572 Carpinus fangiana HOM05D005379 ORTHO05D006661 2.5e-22 109.0 119 54.6
QL09p028045 Quercus lobata HOM05D005379 ORTHO05D006661 2.5e-22 109.0 119 51.3
Haze_22191 Corylus avellana HOM05D005379 ORTHO05D006661 3.6e-21 105.1 119 53.8
Lalb_Chr05g0217631 Lupinus albus HOM05D005379 ORTHO05D006661 3.6e-21 105.1 118 50.8
Thecc.03G149400 Theobroma cacao HOM05D005379 ORTHO05D006661 1.1e-20 103.6 118 50.0
TAR375G0328 Trochodendron aralioides HOM05D005379 ORTHO05D006661 1.4e-20 103.2 117 51.3
Eucgr.K00130 Eucalyptus grandis HOM05D005379 ORTHO05D006661 1.8e-20 102.8 118 50.0
Prupe.2G273100 Prunus persica HOM05D005379 ORTHO05D006661 2.4e-20 102.4 118 53.4
RcHm_v2.0_Chr1g0373791 Rosa chinensis HOM05D005379 ORTHO05D006661 2.4e-20 102.4 118 51.7
Gohir.A07G043200 Gossypium hirsutum HOM05D005379 ORTHO05D006661 3.1e-20 102.1 118 50.0
Medtr2g009320 Medicago truncatula HOM05D005379 ORTHO05D006661 3.1e-20 102.1 117 47.9
Manes.14G038300 Manihot esculenta HOM05D005379 ORTHO05D006661 5.3e-20 101.3 119 51.3
Glyma.08G176800 Glycine max HOM05D005379 ORTHO05D006661 6.9e-20 100.9 119 49.6
Hma1.2p1_0456F.1_g156820 Hydrangea macrophylla HOM05D005379 ORTHO05D006661 6.9e-20 100.9 118 47.5
MBI04_g36330_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 9.0e-20 100.5 117 47.9
MBI04_g38758_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 9.0e-20 100.5 117 47.9
Gorai.001G050800 Gossypium raimondii HOM05D005379 ORTHO05D006661 1.2e-19 100.1 118 49.2
Sed0000219 Sechium edule HOM05D005379 ORTHO05D006661 1.2e-19 100.1 122 47.5
Dinv06594 Davidia involucrata HOM05D005379 ORTHO05D006661 1.5e-19 99.8 118 50.0
Lalb_Chr16g0382791 Lupinus albus HOM05D005379 ORTHO05D006661 1.5e-19 99.8 118 48.3
CANSAT56G0595 Cannabis sativa HOM05D005379 ORTHO05D006661 2.0e-19 99.4 121 50.4
CANSAT56G1299 Cannabis sativa HOM05D005379 ORTHO05D006661 2.0e-19 99.4 121 50.4
Potri.003G151600 Populus trichocarpa HOM05D005379 ORTHO05D006661 2.0e-19 99.4 88 64.8
CSS0027857 Camellia sinensis var. sinensis HOM05D005379 ORTHO05D006661 2.6e-19 99.0 119 49.6
MELO3C008037.2 Cucumis melo HOM05D005379 ORTHO05D006661 2.6e-19 99.0 119 47.9
Lj1A584T32 Lonicera japonica HOM05D005379 ORTHO05D006661 4.5e-19 98.2 125 48.0
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 7.6e-19 97.4 118 47.5
MD07G1249400 Malus domestica HOM05D005379 ORTHO05D006661 7.6e-19 97.4 118 50.0
PGR004G0100 Punica granatum HOM05D005379 ORTHO05D006661 7.6e-19 97.4 118 52.5
CsaV3_6G041840 Cucumis sativus L. HOM05D005379 ORTHO05D006661 9.9e-19 97.1 119 47.1
Psat1g214640 Pisum sativum HOM05D005379 ORTHO05D006661 1.3e-18 96.7 117 44.4
vmacro06833 Vaccinium macrocarpon HOM05D005379 ORTHO05D006661 1.3e-18 96.7 119 47.9
Glyma.15G056200 Glycine max HOM05D005379 ORTHO05D006661 1.7e-18 96.3 117 47.0
BcaC04g20721 Brassica carinata HOM05D005379 ORTHO05D006661 3.8e-18 95.1 84 59.5
C09p39890 Brassica napus HOM05D005379 ORTHO05D006661 3.8e-18 95.1 84 59.5
BolC9t56888H Brassica oleracea HOM05D005379 ORTHO05D006661 3.8e-18 95.1 84 59.5
MD01G1177600 Malus domestica HOM05D005379 ORTHO05D006661 3.8e-18 95.1 118 50.8
A10p07900 Brassica napus HOM05D005379 ORTHO05D006661 4.9e-18 94.7 84 58.3
BraSC35t46008Z Brassica rapa HOM05D005379 ORTHO05D006661 4.9e-18 94.7 84 58.3
THA.LOC104811535 Tarenaya hassleriana HOM05D005379 ORTHO05D006661 6.4e-18 94.4 118 49.2
TAR374G0427 Trochodendron aralioides HOM05D005379 ORTHO05D006661 6.4e-18 94.4 117 47.0
Ciclev10005581m.g Citrus clementina HOM05D005379 ORTHO05D006661 8.4e-18 94.0 117 44.4
Phvul.006G202400 Phaseolus vulgaris HOM05D005379 ORTHO05D006661 8.4e-18 94.0 117 46.2
Sabra03G0109800 Salix brachista HOM05D005379 ORTHO05D006661 8.4e-18 94.0 122 52.5
GSVIVG01013977001 Vitis vinifera HOM05D005379 ORTHO05D006661 8.4e-18 94.0 120 45.8
arahy.Tifrunner.gnm1.ann1.3L844V Arachis hypogaea HOM05D005379 ORTHO05D006661 1.1e-17 93.6 117 48.7
arahy.Tifrunner.gnm1.ann1.8RST7H Arachis hypogaea HOM05D005379 ORTHO05D006661 1.1e-17 93.6 117 48.7
ClCG01G015600 Citrullus lanatus HOM05D005379 ORTHO05D006661 1.1e-17 93.6 119 44.5
CARHR256800 Cardamine hirsuta HOM05D005379 ORTHO05D006661 1.4e-17 93.2 118 48.3
Sp6g13420 Schrenkiella parvula HOM05D005379 ORTHO05D006661 1.4e-17 93.2 118 46.6
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 4.2e-17 91.7 123 48.0
Cc02_g04670 Coffea canephora HOM05D005379 ORTHO05D006661 5.4e-17 91.3 85 58.8
Thhalv10014342m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 5.4e-17 91.3 118 48.3
Rhsim03G0161700 Rhododendron simsii HOM05D005379 ORTHO05D006661 5.4e-17 91.3 119 47.9
Aa31LG3G7760 Aethionema arabicum HOM05D005379 ORTHO05D006661 7.1e-17 90.9 97 50.5
Lj3g0027387 Lotus japonicus HOM05D005379 ORTHO05D006661 7.1e-17 90.9 117 45.3
Nitab4.5_0010756g0010 Nicotiana tabacum HOM05D005379 ORTHO05D006661 7.1e-17 90.9 119 47.1
AT5G51220 Arabidopsis thaliana HOM05D005379 ORTHO05D006661 9.3e-17 90.5 118 46.6
TWI23G1062 Tripterygium wilfordii HOM05D005379 ORTHO05D006661 9.3e-17 90.5 123 47.2
VMungo0540G0153 Vigna mungo HOM05D005379 ORTHO05D006661 9.3e-17 90.5 119 47.1
PSO782G5074 Papaver somniferum HOM05D005379 ORTHO05D006661 1.2e-16 90.1 118 44.1
BcaB08g35480 Brassica carinata HOM05D005379 ORTHO05D006661 1.6e-16 89.7 89 52.8
CDE11G0172 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 1.6e-16 89.7 118 44.1
FAN06G0815 Fragaria x ananassa HOM05D005379 ORTHO05D006661 2.7e-16 89.0 118 46.6
Nitab4.5_0000262g0030 Nicotiana tabacum HOM05D005379 ORTHO05D006661 2.7e-16 89.0 86 55.8
Sopen06g010750 Solanum pennellii HOM05D005379 ORTHO05D006661 2.7e-16 89.0 118 44.9
Carub.0008s1126 Capsella rubella HOM05D005379 ORTHO05D006661 4.6e-16 88.2 117 45.3
Solyc06g034100.4 Solanum lycopersicum HOM05D005379 ORTHO05D006661 4.6e-16 88.2 117 47.0
FAN03G3283 Fragaria x ananassa HOM05D005379 ORTHO05D006661 6.0e-16 87.8 118 46.6
Cpa.g.sc13.263 Carica papaya HOM05D005379 ORTHO05D006661 7.9e-16 87.4 123 45.5
FvH4_7g27000 Fragaria vesca HOM05D005379 ORTHO05D006661 1.0e-15 87.0 118 46.6
Ca_00152_v3 Cicer arietinum L. HOM05D005379 ORTHO05D006661 1.3e-15 86.7 90 51.1
FAN10G0849 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.3e-15 86.7 117 46.2
Nitab4.5_0000448g0020 Nicotiana tabacum HOM05D005379 ORTHO05D006661 1.3e-15 86.7 119 42.9
CAN.G174.21 Capsicum annuum HOM05D005379 ORTHO05D006661 1.8e-15 86.3 86 52.3
Dinv06588 Davidia involucrata HOM05D005379 ORTHO05D006661 1.8e-15 86.3 86 55.8
Peaxi162Scf00304g01113 Petunia axillaris HOM05D005379 ORTHO05D006661 3.0e-15 85.5 121 43.8
SalBow7G3941 Salvia bowleyana HOM05D005379 ORTHO05D006661 3.0e-15 85.5 120 44.2
MSTRG.8845 Avicennia marina HOM05D005379 ORTHO05D006661 3.9e-15 85.1 91 51.6
HanXRQChr05g0139501 Helianthus annuus HOM05D005379 ORTHO05D006661 3.9e-15 85.1 56 73.2
SalBow7G1847 Salvia bowleyana HOM05D005379 ORTHO05D006661 3.9e-15 85.1 120 44.2
Nitab4.5_0002211g0080 Nicotiana tabacum HOM05D005379 ORTHO05D006661 5.1e-15 84.7 119 44.5
PSO063G0621 Papaver somniferum HOM05D005379 ORTHO05D006661 5.1e-15 84.7 118 44.1
ATR0057G081 Amborella trichopoda HOM05D005379 ORTHO05D006661 6.7e-15 84.3 85 50.6
Peaxi162Scf00167g00730 Petunia axillaris HOM05D005379 ORTHO05D006661 6.7e-15 84.3 56 69.6
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 6.7e-15 84.3 122 45.1
Lsat_1_v5_gn_8_9541 Lactuca sativa HOM05D005379 ORTHO05D006661 1.1e-14 83.6 119 47.1
CiPaw.08G041400 Carya illinoinensis HOM05D005379 ORTHO05D006661 1.5e-14 83.2 51 76.5
AL8G25500 Arabidopsis lyrata HOM05D005379 ORTHO05D006661 2.5e-14 82.4 51 72.5
SalBow5G2200 Salvia bowleyana HOM05D005379 ORTHO05D006661 2.5e-14 82.4 120 43.3
SGA_v2.0_scaffold60G20811 Striga asiatica HOM05D005379 ORTHO05D006661 2.5e-14 82.4 144 38.9
Manes.06G131601 Manihot esculenta HOM05D005379 ORTHO05D006661 7.4e-14 80.9 64 60.9
HanXRQChr08g0222701 Helianthus annuus HOM05D005379 ORTHO05D006661 9.6e-14 80.5 54 70.4
DCAR_018078 Daucus carota HOM05D005379 ORTHO05D006661 1.3e-13 80.1 122 41.0
Actinidia31774 Actinidia chinensis HOM05D005379 ORTHO05D006661 8.1e-13 77.4 61 59.0
Migut.F00521 Erythranthe guttata HOM05D005379 ORTHO05D006661 1.1e-12 77.0 120 40.8
Oeu042535.3 Olea europaea HOM05D005379 ORTHO05D006661 5.3e-12 74.7 51 64.7
Os07g0490300 Oryza sativa ssp. japonica HOM05D005379 ORTHO05D006661 6.9e-12 74.3 56 60.7
Zm00001eb321690 Zea mays HOM05D005379 ORTHO05D006661 7.6e-11 70.9 56 58.9
Zm00001eb105230 Zea mays HOM05D005379 ORTHO05D006661 9.9e-11 70.5 56 58.9
HanXRQChr07g0205531 Helianthus annuus HOM05D005379 ORTHO05D006661 1.1e-09 67.0 69 53.6
ECA238G1883 Erigeron canadensis HOM05D005379 ORTHO05D006661 3.5e-08 62.0 56 55.4


User provided reference genes

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