Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g066190 Amaranthus hybridus HOM05D000031 ORTHO05D009544 1.1e-37 159.5 80 100.0
Ah.05g178830 Amaranthus hybridus HOM05D000031 ORTHO05D009544 5.0e-22 107.5 64 87.5
EL10Ac1g00164 Beta vulgaris HOM05D000031 ORTHO05D009544 4.2e-21 104.4 67 80.6
TWI14G0275 Tripterygium wilfordii HOM05D000031 ORTHO05D009544 2.1e-20 102.1 62 80.6
AUR62004573 Chenopodium quinoa HOM05D000031 ORTHO05D009544 2.7e-20 101.7 62 82.3
AUR62022686 Chenopodium quinoa HOM05D000031 ORTHO05D009544 1.0e-19 99.8 62 79.0
Sc23g0001670 Simmondsia chinensis HOM05D000031 ORTHO05D009544 5.1e-19 97.4 67 71.6
CiPaw.01G085800 Carya illinoinensis HOM05D000031 ORTHO05D009544 2.0e-18 95.5 62 79.0
Cfa003722 Carpinus fangiana HOM05D000031 ORTHO05D009544 5.7e-18 94.0 62 77.4
Haze_15756 Corylus avellana HOM05D000031 ORTHO05D009544 5.7e-18 94.0 62 77.4
Prupe.2G200600 Prunus persica HOM05D000031 ORTHO05D009544 1.3e-17 92.8 64 75.0
QL08p047907 Quercus lobata HOM05D000031 ORTHO05D009544 1.3e-17 92.8 61 77.0
Thecc.01G331700 Theobroma cacao HOM05D000031 ORTHO05D009544 1.7e-17 92.4 62 75.8
TAR375G0588 Trochodendron aralioides HOM05D000031 ORTHO05D009544 2.2e-17 92.0 62 74.2
Ciclev10019337m.g Citrus clementina HOM05D000031 ORTHO05D009544 3.7e-17 91.3 65 72.3
Lj9A609T66 Lonicera japonica HOM05D000031 ORTHO05D009544 6.3e-17 90.5 62 77.4
FAN01G3057 Fragaria x ananassa HOM05D000031 ORTHO05D009544 1.1e-16 89.7 63 71.4
FAN03G2874 Fragaria x ananassa HOM05D000031 ORTHO05D009544 1.1e-16 89.7 63 71.4
FAN10G0193 Fragaria x ananassa HOM05D000031 ORTHO05D009544 1.1e-16 89.7 63 71.4
FAN10G2307 Fragaria x ananassa HOM05D000031 ORTHO05D009544 1.1e-16 89.7 63 71.4
MD07G1161300 Malus domestica HOM05D000031 ORTHO05D009544 1.8e-16 89.0 64 71.9
MD01G1091100 Malus domestica HOM05D000031 ORTHO05D009544 2.4e-16 88.6 64 71.9
SalBow5G5198 Salvia bowleyana HOM05D000031 ORTHO05D009544 4.1e-16 87.8 62 75.8
FvH4_7g17870 Fragaria vesca HOM05D000031 ORTHO05D009544 7.0e-16 87.0 63 69.8
Manes.05G015400 Manihot esculenta HOM05D000031 ORTHO05D009544 7.0e-16 87.0 63 73.0
RcHm_v2.0_Chr1g0361321 Rosa chinensis HOM05D001071 ORTHO05D009544 9.1e-16 86.7 61 72.1
FAN06G3589 Fragaria x ananassa HOM05D000031 ORTHO05D009544 1.2e-15 86.3 63 69.8
FAN06G4017 Fragaria x ananassa HOM05D000031 ORTHO05D009544 1.2e-15 86.3 63 69.8
Oeu034945.1 Olea europaea HOM05D000031 ORTHO05D009544 1.6e-15 85.9 61 73.8
Duzib138G1228 Durio zibethinus HOM05D000031 ORTHO05D009544 2.0e-15 85.5 62 69.4
ECA234G2964 Erigeron canadensis HOM05D000031 ORTHO05D009544 2.6e-15 85.1 65 76.9
Gohir.A11G102000 Gossypium hirsutum HOM05D000031 ORTHO05D009544 2.6e-15 85.1 61 67.2
Lj3g0021890 Lotus japonicus HOM05D000031 ORTHO05D009544 2.6e-15 85.1 62 69.4
Potri.002G181100 Populus trichocarpa HOM05D000031 ORTHO05D009544 3.5e-15 84.7 62 71.0
COL.COLO4_23062 Corchorus olitorius HOM05D000031 ORTHO05D009544 4.5e-15 84.3 64 70.3
Lalb_Chr10g0100931 Lupinus albus HOM05D000031 ORTHO05D009544 4.5e-15 84.3 62 67.7
Glyma.03G261900 Glycine max HOM05D000031 ORTHO05D009544 5.9e-15 84.0 62 67.7
Glyma.19G261000 Glycine max HOM05D000031 ORTHO05D009544 5.9e-15 84.0 62 67.7
Gohir.D11G106600 Gossypium hirsutum HOM05D000031 ORTHO05D009544 7.7e-15 83.6 61 65.6
Gorai.007G114100 Gossypium raimondii HOM05D000031 ORTHO05D009544 7.7e-15 83.6 61 65.6
Lsat_1_v5_gn_4_35281 Lactuca sativa HOM05D000031 ORTHO05D009544 1.0e-14 83.2 64 75.0
ClCG06G002350 Citrullus lanatus HOM05D000031 ORTHO05D009544 1.3e-14 82.8 63 69.8
Sabra02G0133400 Salix brachista HOM05D000031 ORTHO05D009544 1.3e-14 82.8 62 67.7
Aqoxy7G00003 Aquilegia oxysepala HOM05D000031 ORTHO05D009544 3.8e-14 81.3 62 66.1
Cpa.g.c30749 Carica papaya HOM05D000031 ORTHO05D009544 3.8e-14 81.3 62 69.4
Medtr8g024060 Medicago truncatula HOM05D000031 ORTHO05D009544 5.0e-14 80.9 62 66.1
PSO063G1450 Papaver somniferum HOM05D000031 ORTHO05D009544 5.0e-14 80.9 59 66.1
VMungo1309G3146 Vigna mungo HOM05D000031 ORTHO05D009544 5.0e-14 80.9 62 66.1
CsaV3_6G008390 Cucumis sativus L. HOM05D000031 ORTHO05D009544 6.5e-14 80.5 65 64.6
Phvul.009G259800 Phaseolus vulgaris HOM05D000031 ORTHO05D009544 6.5e-14 80.5 62 66.1
Sed0018870 Sechium edule HOM05D000031 ORTHO05D009544 6.5e-14 80.5 64 67.2
DCAR_002976 Daucus carota HOM05D000031 ORTHO05D009544 1.5e-13 79.3 65 64.6
TPR.G30273 Trifolium pratense HOM05D000031 ORTHO05D009544 1.5e-13 79.3 62 64.5
VMungo0251G1802 Vigna mungo HOM05D000031 ORTHO05D009544 1.5e-13 79.3 90 53.3
PSO782G1618 Papaver somniferum HOM05D000031 ORTHO05D009544 2.5e-13 78.6 57 66.7
Gohir.A12G117600 Gossypium hirsutum HOM05D000031 ORTHO05D009544 3.2e-13 78.2 62 64.5
CANSAT56G3381 Cannabis sativa HOM05D000031 ORTHO05D009544 7.2e-13 77.0 68 64.7
HanXRQChr17g0562181 Helianthus annuus HOM05D000031 ORTHO05D009544 7.2e-13 77.0 65 70.8
Hma1.2p1_2492F.1_g323270 Hydrangea macrophylla HOM05D000031 ORTHO05D009544 7.2e-13 77.0 66 72.7
MELO3C022300.2 Cucumis melo HOM05D000031 ORTHO05D009544 1.2e-12 76.3 65 63.1
PGR031G2465 Punica granatum HOM05D000031 ORTHO05D009544 1.2e-12 76.3 61 63.9
Gohir.D12G121200 Gossypium hirsutum HOM05D000031 ORTHO05D009544 2.7e-12 75.1 62 62.9
Gorai.008G132100 Gossypium raimondii HOM05D000031 ORTHO05D009544 2.7e-12 75.1 62 62.9
Nitab4.5_0005359g0040 Nicotiana tabacum HOM05D000031 ORTHO05D009544 6.1e-12 73.9 65 63.1
Nitab4.5_0007792g0020 Nicotiana tabacum HOM05D000031 ORTHO05D009544 6.1e-12 73.9 65 63.1
CSS0005954 Camellia sinensis var. sinensis HOM05D000031 ORTHO05D009544 8.0e-12 73.6 73 61.6
Peaxi162Scf00092g01518 Petunia axillaris HOM05D000031 ORTHO05D009544 1.0e-11 73.2 65 64.6
Psat4g218000 Pisum sativum HOM05D000031 ORTHO05D009544 1.4e-11 72.8 62 62.9
Solyc10g005140.1 Solanum lycopersicum HOM05D000031 ORTHO05D009544 1.4e-11 72.8 65 63.1
Sopen10g001160 Solanum pennellii HOM05D000031 ORTHO05D009544 1.4e-11 72.8 65 63.1
Ca_23484_v3 Cicer arietinum L. HOM05D000031 ORTHO05D009544 2.3e-11 72.0 62 64.5
Atru.chr5.790 Acer truncatum HOM05D000031 ORTHO05D009544 3.0e-11 71.6 60 61.7
MBI12_g27879_MAGBIO Magnolia biondii HOM05D000031 ORTHO05D009544 5.2e-11 70.9 61 63.9
PGSC0003DMG400011304 Solanum tuberosum HOM05D000031 ORTHO05D009544 5.2e-11 70.9 65 61.5
THA.LOC104827646 Tarenaya hassleriana HOM05D000031 ORTHO05D009544 2.6e-10 68.6 61 55.7
BcaB01g03198 Brassica carinata HOM05D000031 ORTHO05D009544 4.4e-10 67.8 62 56.5
BcaC01g05056 Brassica carinata HOM05D000031 ORTHO05D009544 4.4e-10 67.8 62 56.5
A03p25770 Brassica napus HOM05D000031 ORTHO05D009544 4.4e-10 67.8 62 56.5
C03p30710 Brassica napus HOM05D000031 ORTHO05D009544 4.4e-10 67.8 62 56.5
BraA03t11791Z Brassica rapa HOM05D000031 ORTHO05D009544 4.4e-10 67.8 62 56.5
Carub.0004s2956 Capsella rubella HOM05D000031 ORTHO05D009544 4.4e-10 67.8 62 58.1
CARHR142200 Cardamine hirsuta HOM05D000031 ORTHO05D009544 4.4e-10 67.8 62 56.5
arahy.Tifrunner.gnm1.ann1.15S87B Arachis hypogaea HOM05D000031 ORTHO05D009544 5.7e-10 67.4 60 63.3
CAN.G465.12 Capsicum annuum HOM05D000031 ORTHO05D009544 5.7e-10 67.4 65 60.0
CAN.G971.8 Capsicum annuum HOM05D000260 ORTHO05D009544 5.7e-10 67.4 65 60.0
Sp4g28870 Schrenkiella parvula HOM05D000031 ORTHO05D009544 9.7e-10 66.6 62 56.5
Thhalv10001355m.g Eutrema salsugineum HOM05D000031 ORTHO05D009544 2.8e-09 65.1 62 54.8
arahy.Tifrunner.gnm1.ann1.H81X9C Arachis hypogaea HOM05D000031 ORTHO05D009544 3.7e-09 64.7 60 60.0
AL4G46310 Arabidopsis lyrata HOM05D000031 ORTHO05D009544 8.2e-09 63.5 62 54.8
AT2G46850 Arabidopsis thaliana HOM05D000031 ORTHO05D009544 8.2e-09 63.5 62 54.8
Migut.N01519 Erythranthe guttata HOM05D000031 ORTHO05D009544 2.7e-07 58.5 63 61.9
ATR0660G009 Amborella trichopoda HOM05D000031 ORTHO05D009544 2.2e-06 55.5 63 50.8


User provided reference genes

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