Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.12g065380 Amaranthus hybridus HOM05D007118 ORTHO05D008957 0.0e+00 1200.3 656 100.0
AUR62031637 Chenopodium quinoa HOM05D007118 ORTHO05D008957 6.5e-277 957.2 660 79.4
EL10Ac2g02939 Beta vulgaris HOM05D007118 ORTHO05D008957 1.3e-253 879.8 660 71.2
Hund13237 Selenicereus undatus HOM05D007118 ORTHO05D008957 1.4e-242 843.2 664 68.8
Sc14g0006000 Simmondsia chinensis HOM05D007118 ORTHO05D008957 1.1e-231 807.0 664 67.2
AUR62038867 Chenopodium quinoa HOM05D007118 ORTHO05D008957 4.1e-231 805.1 504 80.0
Solyc02g087720.1 Solanum lycopersicum HOM05D007118 ORTHO05D008957 4.9e-216 755.0 667 59.1
PGSC0003DMG400018098 Solanum tuberosum HOM05D007118 ORTHO05D008957 1.1e-215 753.8 667 58.8
Sopen02g032450 Solanum pennellii HOM05D007118 ORTHO05D008957 5.4e-215 751.5 663 59.0
Manes.15G176912 Manihot esculenta HOM05D007118 ORTHO05D008957 3.9e-213 745.3 664 59.8
CAN.G206.124 Capsicum annuum HOM05D007118 ORTHO05D008957 1.5e-212 743.4 667 58.0
CSS0004252 Camellia sinensis var. sinensis HOM05D007118 ORTHO05D008957 7.3e-212 741.1 666 61.0
Peaxi162Scf00129g00042 Petunia axillaris HOM05D007118 ORTHO05D008957 3.6e-211 738.8 662 58.3
CiPaw.03G029400 Carya illinoinensis HOM05D007118 ORTHO05D008957 1.1e-210 737.3 663 59.3
TAR374G0129 Trochodendron aralioides HOM05D007118 ORTHO05D008957 2.3e-210 736.1 666 60.1
Rhsim08G0066600 Rhododendron simsii HOM05D007118 ORTHO05D008957 4.0e-210 735.3 664 59.0
Cc07_g03080 Coffea canephora HOM05D007118 ORTHO05D008957 8.9e-210 734.2 663 58.4
PGR083G1725 Punica granatum HOM05D007118 ORTHO05D008957 2.6e-209 732.6 668 59.4
Cfa007517 Carpinus fangiana HOM05D007118 ORTHO05D008957 5.8e-209 731.5 668 58.4
CANSAT64G2775 Cannabis sativa HOM05D007118 ORTHO05D008957 9.8e-209 730.7 666 58.9
RcHm_v2.0_Chr2g0169061 Rosa chinensis HOM05D007118 ORTHO05D008957 2.9e-208 729.2 663 60.3
Potri.017G078700 Populus trichocarpa HOM05D007118 ORTHO05D008957 1.4e-207 726.9 663 57.5
Prupe.3G271300 Prunus persica HOM05D007118 ORTHO05D008957 1.9e-207 726.5 662 60.7
MD17G1047800 Malus domestica HOM05D007118 ORTHO05D008957 7.0e-207 724.5 665 58.0
Oeu060923.1 Olea europaea HOM05D007118 ORTHO05D008957 7.0e-207 724.5 675 59.3
Ciclev10011233m.g Citrus clementina HOM05D007118 ORTHO05D008957 4.6e-206 721.8 666 57.5
TAR629G0502 Trochodendron aralioides HOM05D007118 ORTHO05D008957 2.5e-204 716.1 662 58.5
TWI32G0076 Tripterygium wilfordii HOM05D007118 ORTHO05D008957 3.3e-204 715.7 665 57.7
C07p37660 Brassica napus HOM05D007118 ORTHO05D008957 1.2e-203 713.8 668 56.6
BolC7t44283H Brassica oleracea HOM05D007118 ORTHO05D008957 1.2e-203 713.8 668 56.6
A06p40390 Brassica napus HOM05D007118 ORTHO05D008957 6.2e-203 711.4 668 56.3
BraA06t26957Z Brassica rapa HOM05D007118 ORTHO05D008957 6.2e-203 711.4 668 56.3
Lsat_1_v5_gn_2_88681 Lactuca sativa HOM05D007118 ORTHO05D008957 2.3e-202 709.5 667 57.1
Potri.004G123900 Populus trichocarpa HOM05D007118 ORTHO05D008957 3.1e-202 709.1 660 58.3
Sabra17G0069800 Salix brachista HOM05D007118 ORTHO05D008957 2.6e-201 706.1 663 56.3
Atru.chr8.1899 Acer truncatum HOM05D007118 ORTHO05D008957 7.5e-201 704.5 669 57.5
Cpa.g.sc14.37 Carica papaya HOM05D007118 ORTHO05D008957 1.3e-200 703.7 667 56.8
Sp2g17370 Schrenkiella parvula HOM05D007118 ORTHO05D008957 1.3e-200 703.7 665 56.4
FAN14G3290 Fragaria x ananassa HOM05D007118 ORTHO05D008957 6.4e-200 701.4 662 59.1
FvH4_6g49180 Fragaria vesca HOM05D007118 ORTHO05D008957 8.3e-200 701.0 662 59.2
FAN05G1119 Fragaria x ananassa HOM05D007118 ORTHO05D008957 8.3e-200 701.0 662 58.8
FAN09G1522 Fragaria x ananassa HOM05D007118 ORTHO05D008957 1.1e-199 700.7 663 59.0
Gorai.006G025500 Gossypium raimondii HOM05D007118 ORTHO05D008957 3.2e-199 699.1 666 58.6
DCAR_011156 Daucus carota HOM05D007118 ORTHO05D008957 5.4e-199 698.4 662 57.1
SalBow1G1856 Salvia bowleyana HOM05D007118 ORTHO05D008957 9.2e-199 697.6 671 57.8
CsaV3_3G041650 Cucumis sativus L. HOM05D007118 ORTHO05D008957 2.1e-198 696.4 661 57.8
Haze_14577 Corylus avellana HOM05D007118 ORTHO05D008957 2.7e-198 696.0 637 60.3
THA.LOC104805448 Tarenaya hassleriana HOM05D007118 ORTHO05D008957 7.8e-198 694.5 663 55.8
FAN02G1928 Fragaria x ananassa HOM05D007118 ORTHO05D008957 1.0e-197 694.1 663 57.6
Gohir.D09G021500 Gossypium hirsutum HOM05D007118 ORTHO05D008957 1.7e-197 693.3 666 58.1
HanXRQChr14g0449321 Helianthus annuus HOM05D007118 ORTHO05D008957 3.9e-197 692.2 663 56.6
Sed0001669 Sechium edule HOM05D007118 ORTHO05D008957 3.9e-197 692.2 656 57.0
TWI60G1543 Tripterygium wilfordii HOM05D007118 ORTHO05D008957 3.9e-197 692.2 665 56.7
MSTRG.3219 Avicennia marina HOM05D007118 ORTHO05D008957 5.6e-196 688.3 658 58.2
QL02p080749 Quercus lobata HOM05D007118 ORTHO05D008957 5.6e-196 688.3 657 56.3
Aqoxy3G00736 Aquilegia oxysepala HOM05D007118 ORTHO05D008957 7.3e-196 688.0 662 57.1
Nn4g23068 Nelumbo nucifera HOM05D007118 ORTHO05D008957 9.5e-196 687.6 659 57.4
MELO3C009888.2 Cucumis melo HOM05D007118 ORTHO05D008957 1.6e-195 686.8 660 57.1
TWI32G0789 Tripterygium wilfordii HOM05D007118 ORTHO05D008957 1.6e-195 686.8 665 56.2
MD09G1047700 Malus domestica HOM05D007118 ORTHO05D008957 4.0e-194 682.2 665 55.6
Gohir.A09G022300 Gossypium hirsutum HOM05D007118 ORTHO05D008957 4.4e-193 678.7 666 57.1
Lj2g0024860 Lotus japonicus HOM05D007118 ORTHO05D008957 1.3e-192 677.2 668 57.0
CARHR151700 Cardamine hirsuta HOM05D007118 ORTHO05D008957 4.9e-192 675.2 661 54.2
Phvul.004G026600 Phaseolus vulgaris HOM05D007118 ORTHO05D008957 6.4e-192 674.9 670 56.7
ECA238G0821 Erigeron canadensis HOM05D007118 ORTHO05D008957 2.4e-191 672.9 668 54.0
AT3G28720 Arabidopsis thaliana HOM05D007118 ORTHO05D008957 5.4e-191 671.8 666 55.1
BcaC06g33635 Brassica carinata HOM05D001960 ORTHO05D008957 1.2e-190 670.6 608 57.2
Carub.0005s0727 Capsella rubella HOM05D007118 ORTHO05D008957 2.1e-190 669.8 662 54.7
Actinidia10548 Actinidia chinensis HOM05D007118 ORTHO05D008957 1.7e-189 666.8 660 59.5
Duzib147G0587 Durio zibethinus HOM05D007118 ORTHO05D008957 2.3e-189 666.4 664 57.7
Aa31LG2G4490 Aethionema arabicum HOM05D007118 ORTHO05D008957 5.1e-189 665.2 662 53.8
Dinv33727 Davidia involucrata HOM05D007118 ORTHO05D008957 1.1e-188 664.1 625 60.2
VMungo0464G1357 Vigna mungo HOM05D007118 ORTHO05D008957 5.6e-188 661.8 673 55.9
Glyma.19G020300 Glycine max HOM05D007118 ORTHO05D008957 1.9e-183 646.7 673 57.1
ClCG10G014860 Citrullus lanatus HOM05D007118 ORTHO05D008957 3.5e-182 642.5 660 54.2
Thecc.04G076000 Theobroma cacao HOM05D007118 ORTHO05D008957 6.6e-181 638.3 664 56.3
CDE04G1934 Ceratophyllum demersum HOM05D007118 ORTHO05D008957 5.6e-180 635.2 688 51.0
TPR.G4266 Trifolium pratense HOM05D007118 ORTHO05D008957 3.6e-179 632.5 677 53.0
HPP92_003624 Vanilla planifolia HOM05D007118 ORTHO05D008957 1.4e-178 630.6 667 52.3
PSO832G0362 Papaver somniferum HOM05D007118 ORTHO05D008957 1.5e-177 627.1 662 51.2
Lalb_Chr02g0159561 Lupinus albus HOM05D007118 ORTHO05D008957 9.9e-177 624.4 674 53.6
Psat1g078560 Pisum sativum HOM05D007118 ORTHO05D008957 1.1e-175 620.9 700 51.6
PSO591G0390 Papaver somniferum HOM05D007118 ORTHO05D008957 1.2e-174 617.5 662 50.3
Ca_04268_v3 Cicer arietinum L. HOM05D007118 ORTHO05D008957 6.0e-174 615.1 502 61.8
SGA_v2.0_scaffold135G34775 Striga asiatica HOM05D007118 ORTHO05D008957 6.7e-173 611.7 506 59.3
Medtr6g011480 Medicago truncatula HOM05D007118 ORTHO05D008957 8.7e-173 611.3 497 60.2
unitig_899.g15508 Utricularia gibba HOM05D007118 ORTHO05D008957 1.8e-170 603.6 610 52.1
Os06g0584200 Oryza sativa ssp. japonica HOM05D007118 ORTHO05D008957 4.0e-170 602.4 663 50.4
Zm00001eb385570 Zea mays HOM05D007118 ORTHO05D008957 1.5e-169 600.5 664 50.0
ATR1120G196 Amborella trichopoda HOM05D007118 ORTHO05D008957 2.6e-169 599.7 669 48.4
Migut.H00894 Erythranthe guttata HOM05D007118 ORTHO05D008957 1.3e-168 597.4 479 61.8
SHI04174 Sapria himalayana HOM05D007118 ORTHO05D008957 3.9e-165 585.9 658 50.2
Lju41C25G1 Lonicera japonica HOM05D007118 ORTHO05D008957 5.3e-154 548.9 426 64.1
COL.COLO4_25162 Corchorus olitorius HOM05D007118 ORTHO05D008957 4.2e-151 539.3 449 61.2
Pp3c3_25440 Physcomitrium patens HOM05D007118 ORTHO05D008957 3.1e-122 443.4 506 48.2
Nitab4.5_0000564g0280 Nicotiana tabacum HOM05D007118 ORTHO05D008957 1.2e-113 414.8 661 41.8
Hma1.2p1_2982F.1_g331230 Hydrangea macrophylla HOM05D007118 ORTHO05D008957 3.5e-113 413.3 276 74.3
Mapoly0051s0046 Marchantia polymorpha HOM05D007118 ORTHO05D008957 7.2e-111 405.6 661 36.9
AagrBONN_evm.TU.Sc2ySwM_344.3877 Anthoceros agrestis HOM05D007118 ORTHO05D008957 9.5e-111 405.2 682 37.7
SMO244G0043 Selaginella moellendorffii HOM05D007118 ORTHO05D008957 8.0e-110 402.1 604 40.1
SMO071G0001 Selaginella moellendorffii HOM05D007118 ORTHO05D008957 4.0e-109 399.8 604 39.9
Nitab4.5_0009739g0010 Nicotiana tabacum HOM05D007118 ORTHO05D008957 4.1e-90 336.7 661 35.2
Glyma.13G064602 Glycine max HOM05D007118 ORTHO05D008957 4.2e-74 283.5 227 63.0
CBR_g8886 Chara braunii HOM05D007118 ORTHO05D008957 1.2e-60 238.8 671 28.3
SMO244G0031 Selaginella moellendorffii HOM05D007118 ORTHO05D008957 6.0e-57 226.5 247 47.0
SMO244G0004 Selaginella moellendorffii HOM05D007118 ORTHO05D008957 1.0e-56 225.7 249 46.6
SMO244G0083 Selaginella moellendorffii HOM05D007118 ORTHO05D008957 1.0e-56 225.7 249 46.6
MCO07G741 Micromonas commoda HOM05D007118 ORTHO05D008957 3.2e-26 124.4 553 24.1
CDE06G0613 Ceratophyllum demersum HOM05D007118 ORTHO05D008957 2.3e-24 118.2 290 32.1
VMungo1080G1696 Vigna mungo HOM05D007118 ORTHO05D008957 3.1e-21 107.8 94 55.3
Cre02.g081650 Chlamydomonas reinhardtii HOM05D007118 ORTHO05D008957 1.1e-15 89.4 648 24.4
PRCOL_00001393 Prasinoderma coloniale HOM05D007118 ORTHO05D008957 1.4e-13 82.4 324 27.2
Zm00001eb240720 Zea mays HOM05D005244 ORTHO05D006539 1.5e-10 72.4 298 25.5
CSS0037198 Camellia sinensis var. sinensis HOM05D005244 ORTHO05D006539 1.6e-09 68.9 339 25.1
Potri.006G080700 Populus trichocarpa HOM05D005244 ORTHO05D006539 2.1e-09 68.6 288 24.7
AUR62020750 Chenopodium quinoa HOM05D005244 ORTHO05D006539 1.0e-08 66.2 313 24.0
Potri.018G150600 Populus trichocarpa HOM05D005244 ORTHO05D006539 1.0e-08 66.2 288 24.7
Actinidia02527 Actinidia chinensis HOM05D005244 ORTHO05D006539 1.4e-08 65.9 313 24.3
Eucgr.C02153 Eucalyptus grandis HOM05D005244 ORTHO05D006539 2.3e-08 65.1 298 24.2
Sc25g0001730 Simmondsia chinensis HOM05D005244 ORTHO05D006539 4.0e-08 64.3 315 24.1
MSTRG.26510 Avicennia marina HOM05D005244 ORTHO05D006539 5.2e-08 63.9 299 24.7
BcaC04g19907 Brassica carinata HOM05D005244 ORTHO05D006539 8.8e-08 63.2 240 26.2
C09p50010 Brassica napus HOM05D005244 ORTHO05D006539 8.8e-08 63.2 240 26.2
BolC9t57854H Brassica oleracea HOM05D005244 ORTHO05D006539 8.8e-08 63.2 240 26.2
Lju50C34G1 Lonicera japonica HOM05D005244 ORTHO05D006539 8.8e-08 63.2 318 25.2
VMungo0464G0587 Vigna mungo HOM05D005244 ORTHO05D006539 8.8e-08 63.2 298 23.8
Carub.0008s1866 Capsella rubella HOM05D005244 ORTHO05D006539 1.2e-07 62.8 316 24.7
CiPaw.07G237900 Carya illinoinensis HOM05D005244 ORTHO05D006539 1.5e-07 62.4 294 24.5
Sp6g19790 Schrenkiella parvula HOM05D005244 ORTHO05D006539 1.5e-07 62.4 248 27.0
TWI34G0889 Tripterygium wilfordii HOM05D005244 ORTHO05D006539 1.5e-07 62.4 291 24.4
Atru.chr7.1024 Acer truncatum HOM05D005244 ORTHO05D006539 2.0e-07 62.0 298 24.5
BcaB08g36163 Brassica carinata HOM05D005244 ORTHO05D006539 2.6e-07 61.6 240 25.8
HanXRQChr10g0309401 Helianthus annuus HOM05D005244 ORTHO05D006539 2.6e-07 61.6 317 24.0
THA.LOC104817833 Tarenaya hassleriana HOM05D005244 ORTHO05D006539 3.4e-07 61.2 399 23.1
AT5G58100 Arabidopsis thaliana HOM05D005244 ORTHO05D006539 4.4e-07 60.8 240 26.2
CARHR271920 Cardamine hirsuta HOM05D005244 ORTHO05D006539 4.4e-07 60.8 234 25.2
ECA234G0362 Erigeron canadensis HOM05D005244 ORTHO05D006539 4.4e-07 60.8 288 22.9
Nitab4.5_0000807g0220 Nicotiana tabacum HOM05D005244 ORTHO05D006539 5.7e-07 60.5 335 24.2
Nn8g41249 Nelumbo nucifera HOM05D005244 ORTHO05D006539 7.5e-07 60.1 299 24.4
SGA_v2.0_scaffold21G09589 Striga asiatica HOM05D005244 ORTHO05D006539 7.5e-07 60.1 344 23.3
Aa31LG3G13950 Aethionema arabicum HOM05D005244 ORTHO05D006539 9.8e-07 59.7 251 25.9
ATR0626G132 Amborella trichopoda HOM05D005244 ORTHO05D006539 1.3e-06 59.3 318 23.9
AL8G34210 Arabidopsis lyrata HOM05D005244 ORTHO05D006539 1.3e-06 59.3 215 26.5
CAN.G57.4 Capsicum annuum HOM05D005244 ORTHO05D006539 1.3e-06 59.3 335 23.9
Ciclev10007431m.g Citrus clementina HOM05D005244 ORTHO05D006539 1.3e-06 59.3 223 27.4
Migut.L01612 Erythranthe guttata HOM05D005244 ORTHO05D006539 1.3e-06 59.3 298 24.2
Thhalv10012595m.g Eutrema salsugineum HOM05D005244 ORTHO05D006539 1.3e-06 59.3 291 24.7
QL11p005809 Quercus lobata HOM05D005244 ORTHO05D006539 1.3e-06 59.3 298 23.2
QL11p006533 Quercus lobata HOM05D005244 ORTHO05D006539 1.3e-06 59.3 298 23.2
A10p16080 Brassica napus HOM05D005244 ORTHO05D006539 1.7e-06 58.9 240 25.4
CANSAT80G0544 Cannabis sativa HOM05D005244 ORTHO05D006539 2.2e-06 58.5 297 23.9
Ca_25641_v3 Cicer arietinum L. HOM05D005244 ORTHO05D006539 2.2e-06 58.5 288 22.9
Solyc07g042910.4 Solanum lycopersicum HOM05D005244 ORTHO05D006539 2.8e-06 58.2 335 23.9
Sopen07g022510 Solanum pennellii HOM05D005244 ORTHO05D006539 2.8e-06 58.2 335 23.9
BraA10t43621Z Brassica rapa HOM05D005244 ORTHO05D006539 3.7e-06 57.8 215 26.0
Cpa.g.sc91.77 Carica papaya HOM05D005244 ORTHO05D006539 3.7e-06 57.8 288 23.6
Dinv12631 Davidia involucrata HOM05D005244 ORTHO05D006539 3.7e-06 57.8 299 24.7
GSVIVG01034254001 Vitis vinifera HOM05D005244 ORTHO05D006539 3.7e-06 57.8 288 23.6
Cc06_g23580 Coffea canephora HOM05D005244 ORTHO05D006539 6.3e-06 57.0 295 23.7
Glyma.08G360000 Glycine max HOM05D005244 ORTHO05D006539 6.3e-06 57.0 198 26.3
PSO063G2947 Papaver somniferum HOM05D005244 ORTHO05D006539 6.3e-06 57.0 295 24.7
Aqoxy7G02584 Aquilegia oxysepala HOM05D005244 ORTHO05D006539 8.3e-06 56.6 298 23.8
Glyma.01G000900 Glycine max HOM05D005244 ORTHO05D006539 8.3e-06 56.6 198 26.8
Nitab4.5_0000170g0280 Nicotiana tabacum HOM05D005244 ORTHO05D006539 8.3e-06 56.6 337 24.3
PSO170G3502 Papaver somniferum HOM05D005244 ORTHO05D006539 8.3e-06 56.6 295 24.7
TAR383G0812 Trochodendron aralioides HOM05D005244 ORTHO05D006539 8.3e-06 56.6 298 24.2


User provided reference genes

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