Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.12g065370 Amaranthus hybridus HOM05D001960 ORTHO05D007725 1.4e-231 805.8 393 100.0
AUR62031644 Chenopodium quinoa HOM05D001960 ORTHO05D007725 2.0e-196 689.1 394 83.8
AUR62038879 Chenopodium quinoa HOM05D001960 ORTHO05D007725 1.3e-192 676.4 407 80.6
EL10Ac2g03435 Beta vulgaris HOM05D001960 ORTHO05D007725 9.5e-183 643.7 394 79.7
Hund13245 Selenicereus undatus HOM05D001960 ORTHO05D007725 1.8e-181 639.4 395 79.0
Thecc.04G074100 Theobroma cacao HOM05D001960 ORTHO05D007725 2.4e-178 629.0 392 76.3
Atru.chr8.1915 Acer truncatum HOM05D001960 ORTHO05D007725 4.1e-178 628.2 394 75.9
Gohir.D04G050500 Gossypium hirsutum HOM05D001960 ORTHO05D007725 5.4e-178 627.9 394 75.4
CANSAT64G2224 Cannabis sativa HOM05D001960 ORTHO05D007725 9.2e-178 627.1 393 76.6
Gorai.012G056000 Gossypium raimondii HOM05D001960 ORTHO05D007725 9.2e-178 627.1 394 75.4
Manes.17G020800 Manihot esculenta HOM05D001960 ORTHO05D007725 9.2e-178 627.1 395 76.7
TAR371G1229 Trochodendron aralioides HOM05D001960 ORTHO05D007725 1.2e-177 626.7 394 76.6
Sabra17G0069200 Salix brachista HOM05D001960 ORTHO05D007725 1.6e-177 626.3 394 75.4
Potri.017G077000 Populus trichocarpa HOM05D001960 ORTHO05D007725 7.8e-177 624.0 394 75.6
TWI34G1416 Tripterygium wilfordii HOM05D001960 ORTHO05D007725 7.8e-177 624.0 394 75.4
QL02p080348 Quercus lobata HOM05D001960 ORTHO05D007725 1.0e-176 623.6 393 75.3
Ciclev10011611m.g Citrus clementina HOM05D001960 ORTHO05D007725 1.7e-176 622.9 394 73.9
Gohir.A05G364200 Gossypium hirsutum HOM05D001960 ORTHO05D007725 1.1e-175 620.2 394 74.9
RhsimUnG0055000 Rhododendron simsii HOM05D001960 ORTHO05D007725 1.2e-174 616.7 394 75.9
CSS0006137 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 1.6e-174 616.3 393 75.1
CSS0036057 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 1.6e-174 616.3 393 75.1
THA.LOC104823928 Tarenaya hassleriana HOM05D001960 ORTHO05D007725 2.8e-174 615.5 391 73.7
Eucgr.J02136 Eucalyptus grandis HOM05D001960 ORTHO05D007725 4.7e-174 614.8 394 74.4
Thhalv10004119m.g Eutrema salsugineum HOM05D001960 ORTHO05D007725 8.0e-174 614.0 393 73.3
Carub.0005s0723 Capsella rubella HOM05D001960 ORTHO05D007725 1.8e-173 612.8 393 73.3
Nn3g17123 Nelumbo nucifera HOM05D001960 ORTHO05D007725 3.1e-173 612.1 394 74.1
CARHR286600 Cardamine hirsuta HOM05D001960 ORTHO05D007725 4.0e-173 611.7 393 73.0
Hma1.2p1_1232F.1_g268880 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 5.2e-173 611.3 393 74.8
Solyc02g087640.3 Solanum lycopersicum HOM05D001960 ORTHO05D007725 6.8e-173 610.9 394 73.6
GSVIVG01032604001 Vitis vinifera HOM05D001960 ORTHO05D007725 6.8e-173 610.9 394 74.4
Phvul.011G027550 Phaseolus vulgaris HOM05D001960 ORTHO05D007725 8.9e-173 610.5 394 74.1
Sc10g0003830 Simmondsia chinensis HOM05D001960 ORTHO05D007725 8.9e-173 610.5 391 74.4
AL5G18340 Arabidopsis lyrata HOM05D001960 ORTHO05D007725 1.2e-172 610.1 393 73.0
Psat7g177520 Pisum sativum HOM05D001960 ORTHO05D007725 1.2e-172 610.1 393 74.3
Actinidia06068 Actinidia chinensis HOM05D001960 ORTHO05D007725 1.5e-172 609.8 394 74.1
Sopen02g032390 Solanum pennellii HOM05D001960 ORTHO05D007725 1.5e-172 609.8 394 73.4
arahy.Tifrunner.gnm1.ann1.9ZMQ3R Arachis hypogaea HOM05D001960 ORTHO05D007725 2.0e-172 609.4 394 74.4
AT3G28700 Arabidopsis thaliana HOM05D001960 ORTHO05D007725 2.6e-172 609.0 393 72.5
MELO3C021973.2 Cucumis melo HOM05D001960 ORTHO05D007725 3.4e-172 608.6 392 74.7
Cfa007507 Carpinus fangiana HOM05D001960 ORTHO05D007725 4.4e-172 608.2 394 73.6
Prupe.3G272300 Prunus persica HOM05D001960 ORTHO05D007725 4.4e-172 608.2 393 74.6
TPR.G17186 Trifolium pratense HOM05D001960 ORTHO05D007725 4.4e-172 608.2 394 73.9
Sp2g17340 Schrenkiella parvula HOM05D001960 ORTHO05D007725 5.8e-172 607.8 393 72.8
Nitab4.5_0000564g0320 Nicotiana tabacum HOM05D001960 ORTHO05D007725 7.5e-172 607.4 394 73.4
arahy.Tifrunner.gnm1.ann1.57V2RC Arachis hypogaea HOM05D001960 ORTHO05D007725 1.3e-171 606.7 394 74.4
RcHm_v2.0_Chr2g0169211 Rosa chinensis HOM05D001960 ORTHO05D007725 1.3e-171 606.7 392 73.7
ClCG09G018410 Citrullus lanatus HOM05D001960 ORTHO05D007725 1.7e-171 606.3 404 73.3
BcaC06g33634 Brassica carinata HOM05D001960 ORTHO05D007725 2.2e-171 605.9 393 72.3
Nitab4.5_0002265g0270 Nicotiana tabacum HOM05D001960 ORTHO05D007725 3.7e-171 605.1 394 73.4
PGSC0003DMG400001411 Solanum tuberosum HOM05D001960 ORTHO05D007725 3.7e-171 605.1 394 72.8
CAN.G206.108 Capsicum annuum HOM05D001960 ORTHO05D007725 4.9e-171 604.7 394 73.1
Aa31LG2G4510 Aethionema arabicum HOM05D001960 ORTHO05D007725 6.4e-171 604.4 398 72.4
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 6.4e-171 604.4 392 72.2
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 6.4e-171 604.4 392 72.2
CsaV3_5G037870 Cucumis sativus L. HOM05D001960 ORTHO05D007725 6.4e-171 604.4 392 74.5
Lj7A401T79 Lonicera japonica HOM05D001960 ORTHO05D007725 6.4e-171 604.4 429 68.8
BcaC06g30901 Brassica carinata HOM05D001960 ORTHO05D007725 8.3e-171 604.0 393 71.5
CiPaw.03G030400 Carya illinoinensis HOM05D001960 ORTHO05D007725 1.4e-170 603.2 392 73.5
Lj3g0011182 Lotus japonicus HOM05D001960 ORTHO05D007725 1.4e-170 603.2 395 72.4
FvH4_6g49351 Fragaria vesca HOM05D001960 ORTHO05D007725 4.1e-170 601.7 394 72.3
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 7.0e-170 600.9 392 72.2
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 7.0e-170 600.9 392 72.2
FAN05G4054 Fragaria x ananassa HOM05D001960 ORTHO05D007725 7.0e-170 600.9 394 72.3
Medtr4g075200 Medicago truncatula HOM05D001960 ORTHO05D007725 9.2e-170 600.5 394 73.1
VMungo1127G2029 Vigna mungo HOM05D001960 ORTHO05D007725 9.2e-170 600.5 394 72.8
Glyma.11G099200 Glycine max HOM05D001960 ORTHO05D007725 1.6e-169 599.7 394 73.4
Cc01_g00810 Coffea canephora HOM05D001960 ORTHO05D007725 2.0e-169 599.4 393 71.8
DCAR_006720 Daucus carota HOM05D001960 ORTHO05D007725 6.0e-169 597.8 393 71.5
Os01g0588800 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D007725 1.7e-168 596.3 393 71.0
Lalb_Chr19g0139461 Lupinus albus HOM05D001960 ORTHO05D007725 3.9e-168 595.1 396 71.2
SalBow1G8169 Salvia bowleyana HOM05D001960 ORTHO05D007725 3.9e-168 595.1 393 72.0
PGR083G0481 Punica granatum HOM05D001960 ORTHO05D007725 5.0e-168 594.7 397 71.3
Aqoxy3G03264 Aquilegia oxysepala HOM05D001960 ORTHO05D007725 8.6e-168 594.0 392 72.2
MD17G1046800 Malus domestica HOM05D001960 ORTHO05D007725 1.1e-167 593.6 391 72.6
Oeu060916.1 Olea europaea HOM05D001960 ORTHO05D007725 1.1e-167 593.6 394 71.8
ECA232G3528 Erigeron canadensis HOM05D001960 ORTHO05D007725 7.3e-167 590.9 393 71.8
Lsat_1_v5_gn_4_179920 Lactuca sativa HOM05D001960 ORTHO05D007725 7.3e-167 590.9 393 71.8
Sed0013706 Sechium edule HOM05D001960 ORTHO05D007725 7.3e-167 590.9 393 72.8
Ca_19010_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 9.5e-167 590.5 393 72.3
Ca_20945_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 9.5e-167 590.5 394 72.6
SGA_v2.0_scaffold30G12523 Striga asiatica HOM05D001960 ORTHO05D007725 9.5e-167 590.5 394 70.6
Haze_14586 Corylus avellana HOM05D001960 ORTHO05D007725 3.6e-166 588.6 430 67.0
FAN14G4702 Fragaria x ananassa HOM05D001960 ORTHO05D007725 3.6e-166 588.6 384 72.9
MSTRG.15488 Avicennia marina HOM05D001960 ORTHO05D007725 4.7e-166 588.2 394 71.6
MD09G1045900 Malus domestica HOM05D001960 ORTHO05D007725 4.7e-166 588.2 391 72.6
FAN02G2179 Fragaria x ananassa HOM05D001960 ORTHO05D007725 6.2e-166 587.8 424 67.7
Sed0024340 Sechium edule HOM05D001960 ORTHO05D007725 1.4e-165 586.6 392 71.7
PSO832G0234 Papaver somniferum HOM05D001960 ORTHO05D007725 1.8e-165 586.3 393 71.0
HanXRQChr09g0265611 Helianthus annuus HOM05D001960 ORTHO05D007725 2.3e-165 585.9 393 71.0
Migut.K01335 Erythranthe guttata HOM05D001960 ORTHO05D007725 3.1e-165 585.5 392 69.9
MBI15_g37231_MAGBIO Magnolia biondii HOM05D001960 ORTHO05D007725 7.5e-164 580.9 376 72.9
Oeu033340.1 Olea europaea HOM05D001960 ORTHO05D007725 9.8e-164 580.5 375 74.1
ATR1120G150 Amborella trichopoda HOM05D001960 ORTHO05D007725 1.4e-157 560.1 397 67.8
HPP92_022934 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.3e-155 553.5 402 66.9
Dinv33716 Davidia involucrata HOM05D001960 ORTHO05D007725 1.9e-154 549.7 356 73.0
HPP92_022922 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.7e-152 543.1 394 67.3
Zm00001eb357440 Zea mays HOM05D001960 ORTHO05D007725 3.3e-151 538.9 394 67.3
ECA232G0063 Erigeron canadensis HOM05D001960 ORTHO05D007725 7.3e-151 537.7 393 67.4
vmacro05739 Vaccinium macrocarpon HOM05D001960 ORTHO05D007725 8.1e-150 534.3 394 68.3
Peaxi162Scf00129g00533 Petunia axillaris HOM05D001960 ORTHO05D007725 6.4e-147 524.6 394 65.2
C09p03940 Brassica napus HOM05D001960 ORTHO05D007725 3.2e-146 522.3 392 64.3
SEGI_03019 Sequoiadendron giganteum HOM05D001960 ORTHO05D007725 3.5e-145 518.8 395 62.5
BolC9t53325H Brassica oleracea HOM05D001960 ORTHO05D007725 4.3e-143 511.9 380 65.3
COL.COLO4_25201 Corchorus olitorius HOM05D001960 ORTHO05D007725 1.3e-142 510.4 394 65.0
PSO591G0496 Papaver somniferum HOM05D001960 ORTHO05D007725 1.8e-141 506.5 393 63.9
CDE05G2812 Ceratophyllum demersum HOM05D001960 ORTHO05D007725 2.6e-140 502.7 393 64.4
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 1.7e-139 500.0 373 65.4
Pp3c8_16780 Physcomitrium patens HOM05D001960 ORTHO05D007725 4.2e-138 495.4 408 58.3
Mapoly0027s0012 Marchantia polymorpha HOM05D001960 ORTHO05D007725 1.5e-135 486.9 398 61.1
unitig_747.g21836 Utricularia gibba HOM05D001960 ORTHO05D007725 6.2e-134 481.5 394 59.9
Dinv34989 Davidia involucrata HOM05D001960 ORTHO05D007725 1.4e-133 480.3 342 69.9
AagrBONN_evm.TU.Sc2ySwM_368.2217 Anthoceros agrestis HOM05D001960 ORTHO05D007725 1.4e-125 453.8 421 53.4
Hma1.2p1_1232F.1_g268890 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 1.0e-112 411.0 272 73.2
C04p40510 Brassica napus HOM05D001960 ORTHO05D007725 7.4e-111 404.8 312 64.1
BolC4t25631H Brassica oleracea HOM05D001960 ORTHO05D007725 7.4e-111 404.8 312 64.1
SMO200G0063 Selaginella moellendorffii HOM05D001960 ORTHO05D007725 1.2e-108 397.5 407 51.1
C05p44890 Brassica napus HOM05D001960 ORTHO05D007725 1.4e-101 374.0 309 60.8
Ca_19017_v3 Cicer arietinum L. HOM05D000077 ORTHO05D002511 6.9e-101 371.7 363 54.3
C08p31240 Brassica napus HOM05D001960 ORTHO05D007725 8.8e-96 354.8 300 60.0
BcaC02g09250 Brassica carinata HOM05D001960 ORTHO05D007725 7.4e-95 351.7 279 63.1
BolC8t50105H Brassica oleracea HOM05D001960 ORTHO05D007725 7.4e-95 351.7 285 62.1
C08p24890 Brassica napus HOM05D001960 ORTHO05D007725 7.0e-93 345.1 309 57.9
MCO09G443 Micromonas commoda HOM05D001960 ORTHO05D007725 8.2e-86 321.6 402 43.3
HPP92_022944 Vanilla planifolia HOM05D001960 ORTHO05D007725 5.9e-76 288.9 224 63.8
SHI22231 Sapria himalayana HOM05D001960 ORTHO05D007725 7.0e-69 265.4 249 53.8
CBR_g40650 Chara braunii HOM05D001960 ORTHO05D007725 1.7e-67 260.8 329 42.2
Cre02.g096400 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D007725 9.5e-66 255.0 572 30.9
Migut.K01334 Erythranthe guttata HOM05D001960 ORTHO05D007725 5.6e-50 202.6 127 74.8
Cfa026330 Carpinus fangiana HOM05D001960 ORTHO05D007725 5.2e-48 196.1 469 32.2
Dinv34987 Davidia involucrata HOM05D001960 ORTHO05D007725 2.4e-40 170.6 106 78.3
AUR62031616 Chenopodium quinoa HOM05D000372 ORTHO05D002769 5.1e-35 152.9 82 85.4
Actinidia23575 Actinidia chinensis HOM05D001960 ORTHO05D007725 1.9e-34 151.0 109 64.2
BraA05t21956Z Brassica rapa HOM05D001960 ORTHO05D042754 3.9e-19 100.1 91 53.8
C04p14730 Brassica napus HOM05D001960 ORTHO05D014930 1.5e-18 98.2 68 64.7
BolC3t20150H Brassica oleracea HOM05D001960 ORTHO05D014930 1.9e-18 97.8 68 64.7
BcaC02g11495 Brassica carinata HOM05D001960 ORTHO05D014930 2.5e-18 97.4 67 65.7
A01p26160 Brassica napus HOM05D001960 ORTHO05D014930 2.5e-18 97.4 68 64.7
BraA02t06070Z Brassica rapa HOM05D001960 ORTHO05D014930 2.5e-18 97.4 68 64.7
C07p16020 Brassica napus HOM05D001960 ORTHO05D014930 7.4e-18 95.9 69 62.3
CDE05G0334 Ceratophyllum demersum HOM05D000115 ORTHO05D000645 7.4e-18 95.9 61 70.5
A05p31140 Brassica napus HOM05D001960 ORTHO05D042754 1.3e-17 95.1 68 64.7
BolC5t33816H Brassica oleracea HOM05D001960 ORTHO05D014930 1.3e-17 95.1 68 61.8
BcaC05g28941 Brassica carinata HOM05D001960 ORTHO05D014930 2.1e-17 94.4 67 62.7
C07p16060 Brassica napus HOM05D001960 ORTHO05D021151 2.1e-17 94.4 68 61.8
A05p31150 Brassica napus HOM05D001960 ORTHO05D033473 1.5e-15 88.2 89 55.1
HPP92_003669 Vanilla planifolia HOM05D001960 ORTHO05D007725 6.4e-14 82.8 69 62.3
Hma1.2p1_1232F.1_g268870 Hydrangea macrophylla HOM05D001960 ORTHO05D014729 2.1e-12 77.8 38 89.5
HPP92_017638 Vanilla planifolia HOM05D003031 ORTHO05D003371 7.4e-10 69.3 39 76.9
Medtr5g075800 Medicago truncatula HOM05D001960 ORTHO05D258834 3.7e-09 67.0 85 47.1
GSVIVG01021633001 Vitis vinifera HOM05D001960 ORTHO05D439898 1.8e-08 64.7 44 65.9
Dinv06509 Davidia involucrata HOM05D001960 ORTHO05D014729 9.0e-08 62.4 30 90.0


User provided reference genes

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