Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.12g065360 Amaranthus hybridus HOM05D002474 ORTHO05D006727 8.7e-257 889.8 449 100.0
EL10Ac2g02929 Beta vulgaris HOM05D002474 ORTHO05D006727 4.7e-194 681.4 446 77.8
AUR62031654 Chenopodium quinoa HOM05D002474 ORTHO05D006727 4.4e-184 648.3 452 73.5
Nn4g23008 Nelumbo nucifera HOM05D002474 ORTHO05D006727 2.0e-168 596.3 424 70.0
Atru.chr8.2476 Acer truncatum HOM05D002474 ORTHO05D006727 9.8e-168 594.0 424 69.6
Sc11g0006920 Simmondsia chinensis HOM05D002474 ORTHO05D006727 1.4e-166 590.1 446 66.8
Hma1.2p1_0449F.1_g154950 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 4.1e-166 588.6 423 68.8
Thecc.09G254500 Theobroma cacao HOM05D002474 ORTHO05D006727 4.6e-165 585.1 430 66.7
GSVIVG01032597001 Vitis vinifera HOM05D002474 ORTHO05D006727 7.8e-165 584.3 411 70.3
Gorai.013G255100 Gossypium raimondii HOM05D002474 ORTHO05D006727 1.3e-164 583.6 445 65.2
HanXRQChr17g0547501 Helianthus annuus HOM05D002474 ORTHO05D006727 1.7e-164 583.2 460 64.8
Gohir.A13G220300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 6.6e-164 581.3 447 65.5
Cfa007503 Carpinus fangiana HOM05D002474 ORTHO05D006727 3.3e-163 578.9 430 67.7
COL.COLO4_24935 Corchorus olitorius HOM05D002474 ORTHO05D006727 3.3e-163 578.9 387 71.8
RhsimUnG0054500 Rhododendron simsii HOM05D002474 ORTHO05D006727 4.3e-163 578.6 423 69.3
QL02p080225 Quercus lobata HOM05D002474 ORTHO05D006727 1.2e-162 577.0 414 69.1
ECA246G0556 Erigeron canadensis HOM05D002474 ORTHO05D006727 2.1e-162 576.2 470 63.0
CSS0021046 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 2.8e-162 575.9 411 69.6
Eucgr.J02138 Eucalyptus grandis HOM05D002474 ORTHO05D006727 8.1e-162 574.3 471 61.8
CsaV3_5G037800 Cucumis sativus L. HOM05D002474 ORTHO05D006727 1.1e-161 573.9 425 67.8
Phvul.004G025500 Phaseolus vulgaris HOM05D002474 ORTHO05D006727 8.9e-161 570.9 425 66.6
FAN02G0112 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.5e-160 570.1 449 65.0
FvH4_6g49390 Fragaria vesca HOM05D002474 ORTHO05D006727 4.4e-160 568.5 435 66.0
MELO3C021965.2 Cucumis melo HOM05D002474 ORTHO05D006727 5.8e-160 568.2 425 67.5
RcHm_v2.0_Chr2g0169251 Rosa chinensis HOM05D002474 ORTHO05D006727 2.2e-159 566.2 428 66.1
Haze_14590 Corylus avellana HOM05D002474 ORTHO05D006727 1.4e-158 563.5 402 69.9
Lsat_1_v5_gn_3_102300 Lactuca sativa HOM05D002474 ORTHO05D006727 3.2e-158 562.4 453 63.8
Medtr6g011270 Medicago truncatula HOM05D002474 ORTHO05D006727 4.1e-158 562.0 425 65.2
Hund13252 Selenicereus undatus HOM05D002474 ORTHO05D006727 4.1e-158 562.0 515 59.8
Psat1g077640 Pisum sativum HOM05D002474 ORTHO05D006727 7.1e-158 561.2 421 65.8
TPR.G4252 Trifolium pratense HOM05D002474 ORTHO05D006727 7.1e-158 561.2 425 65.6
Ciclev10011620m.g Citrus clementina HOM05D002474 ORTHO05D006727 1.2e-157 560.5 415 67.5
Sopen02g016630 Solanum pennellii HOM05D002474 ORTHO05D006727 1.2e-157 560.5 421 65.8
Solyc02g067480.3 Solanum lycopersicum HOM05D002474 ORTHO05D006727 2.7e-157 559.3 421 66.0
Gohir.D13G224300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 3.5e-157 558.9 454 62.3
arahy.Tifrunner.gnm1.ann1.B2F8E8 Arachis hypogaea HOM05D002474 ORTHO05D006727 7.8e-157 557.8 439 64.2
Migut.K01338 Erythranthe guttata HOM05D002474 ORTHO05D006727 1.0e-156 557.4 465 61.3
Nitab4.5_0006062g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 1.3e-156 557.0 425 65.4
PSO478G4089 Papaver somniferum HOM05D002474 ORTHO05D006727 1.3e-156 557.0 412 67.0
FAN14G2185 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.7e-156 556.6 481 61.5
Aqoxy3G00804 Aquilegia oxysepala HOM05D002474 ORTHO05D006727 3.0e-156 555.8 411 66.4
CAN.G1128.5 Capsicum annuum HOM05D002474 ORTHO05D006727 3.9e-156 555.4 444 62.8
Potri.004G130000 Populus trichocarpa HOM05D002474 ORTHO05D006727 3.9e-156 555.4 414 66.7
SGA_v2.0_scaffold224G42953 Striga asiatica HOM05D002474 ORTHO05D006727 8.6e-156 554.3 417 65.0
Nitab4.5_0002699g0040 Nicotiana tabacum HOM05D002474 ORTHO05D006727 1.1e-155 553.9 413 66.3
PGSC0003DMG400006940 Solanum tuberosum HOM05D002474 ORTHO05D006727 1.1e-155 553.9 444 63.1
unitig_748.g8621 Utricularia gibba HOM05D002474 ORTHO05D006727 2.8e-154 549.3 423 63.4
Oeu033341.3 Olea europaea HOM05D002474 ORTHO05D006727 3.6e-154 548.9 457 62.1
Lalb_Chr06g0175531 Lupinus albus HOM05D002474 ORTHO05D006727 4.0e-153 545.4 421 64.1
Ca_04259_v3 Cicer arietinum L. HOM05D002474 ORTHO05D006727 5.2e-153 545.0 415 64.3
THA.LOC104805441 Tarenaya hassleriana HOM05D002474 ORTHO05D006727 2.0e-152 543.1 466 60.5
AUR62018296 Chenopodium quinoa HOM05D002474 ORTHO05D006727 4.4e-152 542.0 400 69.8
Lj2g0026556 Lotus japonicus HOM05D002474 ORTHO05D006727 7.6e-152 541.2 455 60.4
PSO161G0033 Papaver somniferum HOM05D002474 ORTHO05D006727 9.9e-152 540.8 412 65.5
CARHR262240 Cardamine hirsuta HOM05D002474 ORTHO05D006727 3.2e-150 535.8 421 63.4
Carub.0007s3579 Capsella rubella HOM05D002474 ORTHO05D006727 5.4e-150 535.0 420 63.3
CiPaw.04G020500 Carya illinoinensis HOM05D002474 ORTHO05D006727 1.2e-149 533.9 471 59.9
AL7G50200 Arabidopsis lyrata HOM05D002474 ORTHO05D006727 2.1e-149 533.1 425 63.5
Os12g0638800 Oryza sativa ssp. japonica HOM05D002474 ORTHO05D006727 1.0e-148 530.8 450 60.7
TAR629G1594 Trochodendron aralioides HOM05D002474 ORTHO05D006727 1.3e-148 530.4 393 67.2
Aa31LG9G1670 Aethionema arabicum HOM05D002474 ORTHO05D006727 3.9e-148 528.9 448 61.6
Zm00001eb033100 Zea mays HOM05D002474 ORTHO05D006727 1.5e-147 526.9 454 59.0
BraA04t16928Z Brassica rapa HOM05D002474 ORTHO05D006727 2.5e-147 526.2 412 64.1
CDE08G1502 Ceratophyllum demersum HOM05D002474 ORTHO05D006727 4.3e-147 525.4 425 60.9
Duzib168G1861 Durio zibethinus HOM05D002474 ORTHO05D006727 7.3e-147 524.6 385 67.5
FAN09G4837 Fragaria x ananassa HOM05D002474 ORTHO05D006727 7.3e-147 524.6 481 59.5
PGR083G0251 Punica granatum HOM05D002474 ORTHO05D006727 3.6e-146 522.3 422 63.7
AT5G39940 Arabidopsis thaliana HOM05D002474 ORTHO05D006727 4.7e-146 521.9 421 62.9
Nitab4.5_0023901g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 3.1e-145 519.2 404 64.4
ATR0609G116 Amborella trichopoda HOM05D002474 ORTHO05D006727 4.0e-145 518.8 410 63.2
Rhsim10G0032000 Rhododendron simsii HOM05D002474 ORTHO05D006727 2.6e-144 516.2 392 67.6
Thhalv10028129m.g Eutrema salsugineum HOM05D002474 ORTHO05D006727 4.4e-144 515.4 421 63.4
arahy.Tifrunner.gnm1.ann1.DRNA5E Arachis hypogaea HOM05D002474 ORTHO05D006727 6.4e-143 511.5 439 60.1
VMungo0464G0136 Vigna mungo HOM05D002474 ORTHO05D006727 2.4e-142 509.6 484 56.2
CANSAT64G2711 Cannabis sativa HOM05D002474 ORTHO05D006727 1.6e-141 506.9 401 63.8
Sabra04G0087600 Salix brachista HOM05D002474 ORTHO05D006727 7.8e-141 504.6 458 57.4
Glyma.19G019000 Glycine max HOM05D002474 ORTHO05D006727 2.3e-140 503.1 428 60.0
Peaxi162Scf00059g00319 Petunia axillaris HOM05D002474 ORTHO05D006727 3.9e-140 502.3 391 63.9
TWI60G0106 Tripterygium wilfordii HOM05D002474 ORTHO05D006727 1.9e-139 500.0 424 61.1
Cpa.g.sc14.49 Carica papaya HOM05D002474 ORTHO05D006727 1.5e-136 490.3 440 58.4
Sed0010242 Sechium edule HOM05D002474 ORTHO05D006727 3.5e-133 479.2 374 63.4
FAN05G2709 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.0e-132 477.6 464 56.5
ClCG09G018440 Citrullus lanatus HOM05D002474 ORTHO05D006727 1.8e-132 476.9 557 48.5
Dinv33713 Davidia involucrata HOM05D002474 ORTHO05D006727 1.5e-131 473.8 342 69.6
BcaB06g27397 Brassica carinata HOM05D002474 ORTHO05D006727 2.5e-131 473.0 401 61.1
Pp3c23_2270 Physcomitrium patens HOM05D002474 ORTHO05D006727 2.8e-130 469.5 418 56.7
AagrBONN_evm.TU.Sc2ySwM_369.199 Anthoceros agrestis HOM05D002474 ORTHO05D006727 1.2e-128 464.2 421 55.6
DCAR_011168 Daucus carota HOM05D002474 ORTHO05D006727 2.2e-127 459.9 399 59.9
C04p46420 Brassica napus HOM05D002474 ORTHO05D006727 1.9e-126 456.8 387 60.2
CSS0037906 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 2.5e-126 456.4 342 67.0
vmacro05750 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 1.3e-122 444.1 438 55.0
A04p12710 Brassica napus HOM05D002474 ORTHO05D006727 4.8e-122 442.2 370 60.5
Mapoly0035s0063 Marchantia polymorpha HOM05D002474 ORTHO05D006727 3.1e-121 439.5 407 54.5
SMO137G0254 Selaginella moellendorffii HOM05D002474 ORTHO05D006727 9.3e-118 427.9 454 48.9
SalBow1G0883 Salvia bowleyana HOM05D002474 ORTHO05D006727 2.8e-114 416.4 418 53.6
HanXRQChr16g0519921 Helianthus annuus HOM05D002474 ORTHO05D006727 8.5e-111 404.8 324 64.8
Prupe.3G272800 Prunus persica HOM05D002474 ORTHO05D006727 2.0e-107 393.7 374 56.4
Hma1.2p1_0449F.1_g154940 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 1.5e-104 384.0 298 64.4
HPP92_014139 Vanilla planifolia HOM05D002474 ORTHO05D006727 3.5e-96 356.3 388 49.5
Manes.S095220 Manihot esculenta HOM05D002474 ORTHO05D006727 2.2e-87 327.0 308 56.5
Cc07_g02920 Coffea canephora HOM05D002474 ORTHO05D006727 5.9e-80 302.4 212 67.9
QL02p080117 Quercus lobata HOM05D002474 ORTHO05D006727 1.9e-78 297.4 201 70.6
QL02p080121 Quercus lobata HOM05D002474 ORTHO05D006727 1.6e-77 294.3 187 76.5
Cc07_g02930 Coffea canephora HOM05D002474 ORTHO05D006727 9.8e-75 285.0 189 72.5
CBR_g50657 Chara braunii HOM05D002474 ORTHO05D006727 5.4e-73 279.3 297 47.8
Rhsim10G0031600 Rhododendron simsii HOM05D002474 ORTHO05D006727 3.0e-68 263.5 244 58.6
Lj7A402G46 Lonicera japonica HOM05D002474 ORTHO05D006727 2.3e-63 247.3 280 52.5
Hund13251 Selenicereus undatus HOM05D002474 ORTHO05D006727 2.5e-62 243.8 200 66.5
BolC4t26228H Brassica oleracea HOM05D002474 ORTHO05D006727 2.6e-51 207.2 174 60.9
Lsat_1_v5_gn_6_77521 Lactuca sativa HOM05D002474 ORTHO05D006727 9.9e-43 178.7 238 44.5
SpUN0485_0010 Schrenkiella parvula HOM05D002474 ORTHO05D006727 1.3e-39 168.3 106 75.5
CBR_g59258 Chara braunii HOM05D002474 ORTHO05D006727 1.1e-38 165.2 120 64.2
HanXRQChr09g0265421 Helianthus annuus HOM05D002474 ORTHO05D006727 1.5e-35 154.8 121 62.0
Lj7A402G47 Lonicera japonica HOM05D002474 ORTHO05D006727 2.6e-35 154.1 160 50.0
Lsat_1_v5_gn_2_107941 Lactuca sativa HOM05D002474 ORTHO05D005260 2.3e-31 141.0 212 42.0
SEGI_37465 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 1.3e-29 135.2 113 57.5
Sp7g01810 Schrenkiella parvula HOM05D002474 ORTHO05D006727 1.4e-28 131.7 134 53.7
C09p60950 Brassica napus HOM05D002474 ORTHO05D006727 3.1e-28 130.6 112 58.0
SEGI_13584 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 4.9e-26 123.2 145 44.8
MCO07G529 Micromonas commoda HOM05D002474 ORTHO05D006727 1.9e-25 121.3 450 27.3
Actinidia35021 Actinidia chinensis HOM05D002474 ORTHO05D006727 1.6e-24 118.2 149 47.7
BolC9t56457H Brassica oleracea HOM05D002474 ORTHO05D006727 3.9e-23 113.6 103 55.3
C09p36190 Brassica napus HOM05D002474 ORTHO05D006727 1.2e-19 102.1 96 53.1
MBI04_g20673_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 7.9e-16 89.4 77 55.8
BcaC04g18910 Brassica carinata HOM05D002474 ORTHO05D006727 1.9e-14 84.7 109 46.8
FAN10G3970 Fragaria x ananassa HOM05D002474 ORTHO05D006727 3.7e-13 80.5 45 82.2
MBI04_g20672_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 3.7e-13 80.5 165 33.9
Rhsim10G0031800 Rhododendron simsii HOM05D002474 ORTHO05D006727 6.2e-13 79.7 53 67.9
Cre09.g389400 Chlamydomonas reinhardtii HOM05D002474 ORTHO05D006727 2.6e-11 74.3 267 25.5
FAN10G3068 Fragaria x ananassa HOM05D002474 ORTHO05D006727 7.6e-11 72.8 37 86.5
vmacro05749 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 4.9e-10 70.1 36 83.3
vmacro03926 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 8.4e-10 69.3 36 80.6
Peaxi162Scf00036g01918 Petunia axillaris HOM05D002474 ORTHO05D006727 9.3e-09 65.9 80 43.8
Peaxi162Scf00781g00210 Petunia axillaris HOM05D002474 ORTHO05D006727 1.0e-07 62.4 52 51.9
PRCOL_00006911 Prasinoderma coloniale HOM05D002474 ORTHO05D006727 5.1e-07 60.1 105 34.3
Glyma.13G065601 Glycine max HOM05D002474 ORTHO05D006727 1.5e-06 58.5 49 59.2


User provided reference genes

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