Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.12g065100 Amaranthus hybridus HOM05D004603 ORTHO05D005244 6.3e-126 454.1 234 100.0
AUR62037226 Chenopodium quinoa HOM05D004603 ORTHO05D005244 4.5e-63 245.4 223 61.9
AUR62026828 Chenopodium quinoa HOM05D004603 ORTHO05D005244 2.9e-62 242.7 222 60.8
EL10Ac2g02852 Beta vulgaris HOM05D004603 ORTHO05D005244 2.1e-60 236.5 218 62.4
Hund13330 Selenicereus undatus HOM05D004603 ORTHO05D005244 2.0e-47 193.4 190 51.6
Haze_03089 Corylus avellana HOM05D004603 ORTHO05D005244 7.4e-34 148.3 170 44.7
Cfa010862 Carpinus fangiana HOM05D004603 ORTHO05D005244 9.7e-34 147.9 170 45.3
Potri.003G201500 Populus trichocarpa HOM05D004603 ORTHO05D005244 1.4e-32 144.1 187 42.8
Hma1.2p1_0902F.1_g234830 Hydrangea macrophylla HOM05D004603 ORTHO05D005244 2.4e-32 143.3 170 45.3
Dinv32050 Davidia involucrata HOM05D004603 ORTHO05D005244 3.1e-32 142.9 172 45.3
QL04p013733 Quercus lobata HOM05D004603 ORTHO05D005244 4.1e-32 142.5 170 46.5
GSVIVG01022405001 Vitis vinifera HOM05D004603 ORTHO05D005244 1.2e-31 141.0 170 44.1
Ca_14312_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 3.5e-31 139.4 174 40.2
Sabra01G0018000 Salix brachista HOM05D004603 ORTHO05D005244 3.5e-31 139.4 181 42.0
FAN03G3254 Fragaria x ananassa HOM05D004603 ORTHO05D005244 4.5e-31 139.0 172 41.9
FAN01G0231 Fragaria x ananassa HOM05D000001 ORTHO05D009083 5.9e-31 138.7 174 42.5
FAN10G0154 Fragaria x ananassa HOM05D004603 ORTHO05D005244 5.9e-31 138.7 174 42.5
FAN06G0782 Fragaria x ananassa HOM05D000001 ORTHO05D009083 7.7e-31 138.3 174 42.5
Potri.001G024000 Populus trichocarpa HOM05D004603 ORTHO05D005244 7.7e-31 138.3 174 43.7
VMungo1127G0155 Vigna mungo HOM05D004603 ORTHO05D005244 1.3e-30 137.5 170 41.2
CiPaw.13G010800 Carya illinoinensis HOM05D004603 ORTHO05D005244 1.7e-30 137.1 165 46.7
Phvul.010G125900 Phaseolus vulgaris HOM05D004603 ORTHO05D005244 1.7e-30 137.1 170 40.0
Cpa.g.sc197.6 Carica papaya HOM05D004603 ORTHO05D005244 2.9e-30 136.3 167 41.3
Ciclev10032728m.g Citrus clementina HOM05D004603 ORTHO05D005244 5.0e-30 135.6 170 41.2
Duzib114G1022 Durio zibethinus HOM05D004603 ORTHO05D005244 6.5e-30 135.2 169 40.8
Eucgr.G03257 Eucalyptus grandis HOM05D004603 ORTHO05D005244 6.5e-30 135.2 174 43.1
Gohir.D04G071400 Gossypium hirsutum HOM05D004603 ORTHO05D005244 8.5e-30 134.8 169 43.2
Thecc.10G006000 Theobroma cacao HOM05D004603 ORTHO05D005244 8.5e-30 134.8 168 42.3
TPR.G3881 Trifolium pratense HOM05D004603 ORTHO05D005244 8.5e-30 134.8 167 43.1
Gorai.012G080400 Gossypium raimondii HOM05D004603 ORTHO05D005244 1.1e-29 134.4 169 43.2
Sc10g0004260 Simmondsia chinensis HOM05D004603 ORTHO05D005244 2.5e-29 133.3 188 41.5
VMungo1127G1982 Vigna mungo HOM05D004603 ORTHO05D005244 3.2e-29 132.9 163 40.5
CANSAT35G1099 Cannabis sativa HOM05D004603 ORTHO05D005244 4.2e-29 132.5 161 44.7
RcHm_v2.0_Chr1g0319701 Rosa chinensis HOM05D004603 ORTHO05D005244 5.5e-29 132.1 171 42.1
arahy.Tifrunner.gnm1.ann1.30UV9I Arachis hypogaea HOM05D004603 ORTHO05D005244 7.2e-29 131.7 168 38.7
COL.COLO4_25832 Corchorus olitorius HOM05D004603 ORTHO05D005244 9.4e-29 131.3 171 43.9
Glyma.11G113600 Glycine max HOM05D004603 ORTHO05D005244 1.2e-28 131.0 163 42.3
Lalb_Chr19g0138841 Lupinus albus HOM05D004603 ORTHO05D005244 1.2e-28 131.0 168 39.9
Ca_20912_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 1.6e-28 130.6 161 41.6
Rhsim07G0062700 Rhododendron simsii HOM05D004603 ORTHO05D005244 1.6e-28 130.6 168 42.3
vmacro13728 Vaccinium macrocarpon HOM05D004603 ORTHO05D005244 1.6e-28 130.6 178 41.6
DCAR_031824 Daucus carota HOM05D004603 ORTHO05D005244 2.1e-28 130.2 225 35.1
TWI63G1183 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 2.1e-28 130.2 203 40.4
Actinidia30721 Actinidia chinensis HOM05D004603 ORTHO05D005244 3.6e-28 129.4 131 45.8
Sed0015753 Sechium edule HOM05D004603 ORTHO05D005244 3.6e-28 129.4 173 41.0
PGR031G2747 Punica granatum HOM05D004603 ORTHO05D005244 6.1e-28 128.6 170 41.8
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 1.0e-27 127.9 168 37.5
arahy.Tifrunner.gnm1.ann1.S7XKIQ Arachis hypogaea HOM05D004603 ORTHO05D005244 1.0e-27 127.9 168 38.1
CiPaw.14G006000 Carya illinoinensis HOM05D004603 ORTHO05D005244 1.4e-27 127.5 171 38.0
DCAR_009134 Daucus carota HOM05D004603 ORTHO05D005244 1.8e-27 127.1 213 37.1
DCAR_024211 Daucus carota HOM05D004603 ORTHO05D005244 1.8e-27 127.1 213 36.6
Glyma.12G039500 Glycine max HOM05D004603 ORTHO05D005244 2.3e-27 126.7 172 38.4
Manes.11G002700 Manihot esculenta HOM05D004603 ORTHO05D005244 2.3e-27 126.7 163 42.9
Sed0010230 Sechium edule HOM05D004603 ORTHO05D005244 4.0e-27 125.9 176 39.8
TAR053G0004 Trochodendron aralioides HOM05D004603 ORTHO05D005244 8.8e-27 124.8 170 41.2
TAR369G0595 Trochodendron aralioides HOM05D004603 ORTHO05D005244 2.0e-26 123.6 166 42.8
Carub.0001s3260 Capsella rubella HOM05D004603 ORTHO05D005244 2.6e-26 123.2 170 39.4
Duzib128G1390 Durio zibethinus HOM05D004603 ORTHO05D005244 2.6e-26 123.2 170 37.6
Aa31LG6G8480 Aethionema arabicum HOM05D004603 ORTHO05D005244 3.3e-26 122.9 171 42.7
TWI38G0287 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 3.3e-26 122.9 196 39.3
Psat7g182960 Pisum sativum HOM05D004603 ORTHO05D005244 4.4e-26 122.5 161 37.9
COL.COLO4_29439 Corchorus olitorius HOM05D004603 ORTHO05D005244 5.7e-26 122.1 166 41.6
Medtr4g071040 Medicago truncatula HOM05D004603 ORTHO05D005244 5.7e-26 122.1 178 37.6
MD00G1188600 Malus domestica HOM05D004603 ORTHO05D005244 7.5e-26 121.7 165 40.0
Lj9A646T46 Lonicera japonica HOM05D004603 ORTHO05D005244 9.7e-26 121.3 184 39.7
Lj1A1244T16 Lonicera japonica HOM05D004603 ORTHO05D005244 3.7e-25 119.4 182 39.6
Atru.chr11.2466 Acer truncatum HOM05D004603 ORTHO05D005244 4.8e-25 119.0 178 40.4
Migut.B01205 Erythranthe guttata HOM05D004603 ORTHO05D005244 4.8e-25 119.0 155 43.2
Atru.chr11.2495 Acer truncatum HOM05D004603 ORTHO05D005244 1.1e-24 117.9 178 39.9
Prupe.2G029400 Prunus persica HOM05D004603 ORTHO05D005244 1.1e-24 117.9 180 40.0
Aqoxy2G00300 Aquilegia oxysepala HOM05D004603 ORTHO05D005244 1.4e-24 117.5 138 44.2
MSTRG.20534 Avicennia marina HOM05D004603 ORTHO05D005244 1.4e-24 117.5 176 40.3
CAN.G745.15 Capsicum annuum HOM05D004603 ORTHO05D005244 1.4e-24 117.5 164 36.6
MD02G1294600 Malus domestica HOM05D004603 ORTHO05D005244 1.8e-24 117.1 162 39.5
BolC8t47853H Brassica oleracea HOM05D000499 ORTHO05D002825 3.1e-24 116.3 176 38.1
BcaC07g37535 Brassica carinata HOM05D004603 ORTHO05D005244 4.1e-24 115.9 176 37.5
Nitab4.5_0000316g0040 Nicotiana tabacum HOM05D004603 ORTHO05D005244 5.3e-24 115.5 164 36.0
Peaxi162Scf00047g02136 Petunia axillaris HOM05D004603 ORTHO05D005244 5.3e-24 115.5 163 36.8
MELO3C012448.2 Cucumis melo HOM05D004603 ORTHO05D005244 7.0e-24 115.2 173 37.6
CsaV3_5G036510 Cucumis sativus L. HOM05D004603 ORTHO05D005244 7.0e-24 115.2 177 38.4
ECA248G3322 Erigeron canadensis HOM05D004603 ORTHO05D005244 7.0e-24 115.2 163 39.9
Peaxi162Scf00309g00324 Petunia axillaris HOM05D004603 ORTHO05D005244 7.0e-24 115.2 163 36.8
SalBow5G1211 Salvia bowleyana HOM05D004603 ORTHO05D005244 7.0e-24 115.2 161 38.5
Carub.0007s3712 Capsella rubella HOM05D004603 ORTHO05D005244 9.1e-24 114.8 170 38.2
SalBow1G4372 Salvia bowleyana HOM05D004603 ORTHO05D005244 9.1e-24 114.8 160 38.8
BraA08t32841Z Brassica rapa HOM05D000499 ORTHO05D002825 1.2e-23 114.4 166 36.7
Nitab4.5_0013777g0030 Nicotiana tabacum HOM05D004603 ORTHO05D005244 2.0e-23 113.6 164 35.4
SalBow5G1267 Salvia bowleyana HOM05D004603 ORTHO05D005244 2.0e-23 113.6 161 38.5
Solyc01g068450.4 Solanum lycopersicum HOM05D004603 ORTHO05D005244 4.5e-23 112.5 164 37.2
A08p08230 Brassica napus HOM05D000499 ORTHO05D002825 5.9e-23 112.1 157 38.2
Lj3g0020788 Lotus japonicus HOM05D004603 ORTHO05D005244 5.9e-23 112.1 163 35.6
Sp1g29690 Schrenkiella parvula HOM05D004603 ORTHO05D005244 7.7e-23 111.7 127 40.2
SGA_v2.0_scaffold119G32802 Striga asiatica HOM05D004603 ORTHO05D005244 7.7e-23 111.7 166 38.0
AL1G49060 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 1.0e-22 111.3 168 38.7
TPR.G30506 Trifolium pratense HOM05D004603 ORTHO05D005244 1.0e-22 111.3 169 37.3
CSS0012283 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 1.7e-22 110.5 134 44.0
Cc02_g29120 Coffea canephora HOM05D004603 ORTHO05D005244 1.7e-22 110.5 170 38.2
CSS0050281 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 2.9e-22 109.8 134 44.0
Os01g0950800 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 2.9e-22 109.8 171 36.3
unitig_26.g8818 Utricularia gibba HOM05D004414 ORTHO05D005244 6.5e-22 108.6 206 32.5
MBI13_g05166_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 8.5e-22 108.2 119 45.4
AT1G34570 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 1.1e-21 107.8 170 36.5
HanXRQChr15g0493861 Helianthus annuus HOM05D004603 ORTHO05D005244 1.1e-21 107.8 169 36.1
PSO017G3894 Papaver somniferum HOM05D004603 ORTHO05D005244 1.1e-21 107.8 165 38.2
Sopen01g030410 Solanum pennellii HOM05D004603 ORTHO05D005244 1.1e-21 107.8 164 36.6
HPP92_010478 Vanilla planifolia HOM05D004603 ORTHO05D005244 1.1e-21 107.8 152 36.8
AT3G15750 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 1.5e-21 107.5 171 36.3
BcaB04g17864 Brassica carinata HOM05D004603 ORTHO05D005244 5.5e-21 105.5 170 35.9
Ciclev10017990m.g Citrus clementina HOM05D004603 ORTHO05D005244 5.5e-21 105.5 161 37.3
BcaB07g33112 Brassica carinata HOM05D004603 ORTHO05D005244 7.2e-21 105.1 135 37.8
Thhalv10009671m.g Eutrema salsugineum HOM05D004603 ORTHO05D005244 7.2e-21 105.1 117 41.9
PSO063G4454 Papaver somniferum HOM05D004603 ORTHO05D005244 7.2e-21 105.1 172 39.0
SEGI_29054 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 2.1e-20 103.6 157 36.3
MD07G1031900 Malus domestica HOM05D004603 ORTHO05D005244 2.7e-20 103.2 138 40.6
THA.LOC104819124 Tarenaya hassleriana HOM05D004603 ORTHO05D005244 2.7e-20 103.2 131 43.5
Os10g0580500 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 4.7e-20 102.4 122 42.6
SEGI_15222 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 4.7e-20 102.4 152 36.2
AL7G44820 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 6.1e-20 102.1 171 34.5
Atru.chr11.786 Acer truncatum HOM05D004603 ORTHO05D005244 1.4e-19 100.9 132 40.2
CDE08G1561 Ceratophyllum demersum HOM05D004603 ORTHO05D005244 1.8e-19 100.5 136 40.4
Sp7g17090 Schrenkiella parvula HOM05D004603 ORTHO05D005244 3.0e-19 99.8 151 35.8
PGSC0003DMG400023243 Solanum tuberosum HOM05D004603 ORTHO05D005244 8.8e-19 98.2 128 37.5
BcaC08g43772 Brassica carinata HOM05D004603 ORTHO05D005244 3.4e-18 96.3 165 30.3
Lj2g0001718 Lotus japonicus HOM05D004603 ORTHO05D005244 4.4e-18 95.9 178 31.5
C06p11480 Brassica napus HOM05D004603 ORTHO05D005244 7.5e-18 95.1 165 30.3
ClCG05G020790 Citrullus lanatus HOM05D004603 ORTHO05D005244 9.8e-18 94.7 257 27.2
ATR0721G140 Amborella trichopoda HOM05D004603 ORTHO05D005244 1.3e-17 94.4 130 41.5
HanXRQChr13g0394011 Helianthus annuus HOM05D004603 ORTHO05D005244 2.4e-16 90.1 88 45.5
PSO528G0152 Papaver somniferum HOM05D004603 ORTHO05D005244 2.4e-16 90.1 171 34.5
Mapoly0122s0047 Marchantia polymorpha HOM05D004603 ORTHO05D005244 7.0e-16 88.6 146 35.6
Lsat_1_v5_gn_1_97861 Lactuca sativa HOM05D004603 ORTHO05D005244 9.1e-16 88.2 102 47.1
Gohir.A05G333100 Gossypium hirsutum HOM05D004603 ORTHO05D005244 2.0e-15 87.0 119 41.2
PSO170G0256 Papaver somniferum HOM05D004603 ORTHO05D005244 3.5e-15 86.3 151 33.8
Pp3c5_22730 Physcomitrium patens HOM05D004603 ORTHO05D005244 4.5e-15 85.9 138 35.5
Actinidia21527 Actinidia chinensis HOM05D004603 ORTHO05D005244 5.9e-15 85.5 177 32.2
CARHR033890 Cardamine hirsuta HOM05D004603 ORTHO05D005244 5.0e-14 82.4 167 28.7
Oeu062071.1 Olea europaea HOM05D004603 ORTHO05D005244 6.5e-14 82.0 126 35.7
ATR0217G019 Amborella trichopoda HOM05D004603 ORTHO05D005244 1.9e-13 80.5 137 37.2
CAN.G1571.2 Capsicum annuum HOM05D004603 ORTHO05D005244 5.5e-13 79.0 70 48.6
FAN18G3634 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.2e-12 77.8 116 35.3
Zm00001eb363050 Zea mays HOM05D004603 ORTHO05D005244 1.2e-12 77.8 153 32.0
Zm00001eb140990 Zea mays HOM05D004603 ORTHO05D005244 1.6e-12 77.4 171 29.8
FvH4_5g29020 Fragaria vesca HOM05D004603 ORTHO05D005244 2.1e-12 77.0 88 40.9
RcHm_v2.0_Chr7g0218601 Rosa chinensis HOM05D004603 ORTHO05D005244 1.4e-11 74.3 67 49.3
AagrBONN_evm.TU.Sc2ySwM_117.3931 Anthoceros agrestis HOM05D004603 ORTHO05D005244 4.0e-11 72.8 129 33.3
AUR62017456 Chenopodium quinoa HOM05D004603 ORTHO05D005244 6.8e-11 72.0 68 51.5
CDE09G0498 Ceratophyllum demersum HOM05D002215 ORTHO05D002238 4.4e-10 69.3 72 44.4
FAN13G2986 Fragaria x ananassa HOM05D004603 ORTHO05D005244 5.7e-10 68.9 78 43.6
Cre09.g388245 Chlamydomonas reinhardtii HOM05D004603 ORTHO05D005244 2.2e-09 67.0 86 41.9
ECA248G0603 Erigeron canadensis HOM05D004603 ORTHO05D005244 1.6e-07 60.8 74 41.9
FAN08G2679 Fragaria x ananassa HOM05D004603 ORTHO05D005244 2.7e-07 60.1 171 27.5
AagrBONN_evm.TU.Sc2ySwM_368.759 Anthoceros agrestis HOM05D004603 ORTHO05D005244 1.7e-06 57.4 82 34.1
SHI03956 Sapria himalayana HOM05D005973 ORTHO05D007285 8.6e-06 55.1 65 41.5


User provided reference genes

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