Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.12g065060 Amaranthus hybridus HOM05D007266 ORTHO05D005982 7.9e-208 726.9 364 100.0
EL10Ac2g02761 Beta vulgaris HOM05D007266 ORTHO05D005982 8.4e-109 397.9 389 57.6
Ah.10g030010 Amaranthus hybridus HOM05D007266 ORTHO05D005982 3.0e-90 336.3 372 53.0
AUR62031740 Chenopodium quinoa HOM05D007266 ORTHO05D005982 1.5e-86 323.9 426 47.9
AUR62032625 Chenopodium quinoa HOM05D007266 ORTHO05D005982 1.4e-71 274.2 327 51.4
Hund13391 Selenicereus undatus HOM05D007266 ORTHO05D005982 4.5e-46 189.5 417 37.4
Cfa010951 Carpinus fangiana HOM05D007266 ORTHO05D005982 9.2e-23 112.1 329 32.2
Haze_02992 Corylus avellana HOM05D007266 ORTHO05D005982 3.9e-21 106.7 343 30.9
Eucgr.J00068 Eucalyptus grandis HOM05D007266 ORTHO05D005982 8.6e-21 105.5 318 30.8
arahy.Tifrunner.gnm1.ann1.5HCQ47 Arachis hypogaea HOM05D007266 ORTHO05D005982 2.5e-20 104.0 355 27.0
arahy.Tifrunner.gnm1.ann1.E0LNSJ Arachis hypogaea HOM05D007266 ORTHO05D005982 5.6e-20 102.8 350 26.9
TAR369G0213 Trochodendron aralioides HOM05D007266 ORTHO05D005982 7.3e-20 102.4 376 27.4
Actinidia01687 Actinidia chinensis HOM05D000639 ORTHO05D007519 2.1e-19 100.9 374 30.7
CiPaw.14G009500 Carya illinoinensis HOM05D007266 ORTHO05D005982 2.8e-19 100.5 330 30.9
Atru.chr12.1311 Acer truncatum HOM05D007266 ORTHO05D005982 1.1e-18 98.6 366 30.3
Rhsim01G0124500 Rhododendron simsii HOM05D007266 ORTHO05D005982 1.1e-18 98.6 342 29.5
Glyma.04G133400 Glycine max HOM05D007266 ORTHO05D005982 1.4e-18 98.2 376 27.9
CiPaw.06G056200 Carya illinoinensis HOM05D007266 ORTHO05D005982 1.8e-18 97.8 345 29.9
TWI15G1169 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 3.1e-18 97.1 334 30.8
RcHm_v2.0_Chr1g0327331 Rosa chinensis HOM05D007266 ORTHO05D005982 4.0e-18 96.7 340 30.0
Sabra01G0022900 Salix brachista HOM05D007266 ORTHO05D005982 6.8e-18 95.9 355 29.6
Actinidia01519 Actinidia chinensis HOM05D007266 ORTHO05D005982 8.9e-18 95.5 366 29.2
MD07G1043900 Malus domestica HOM05D007266 ORTHO05D005982 1.5e-17 94.7 330 31.5
Oeu013066.1 Olea europaea HOM05D007266 ORTHO05D005982 1.5e-17 94.7 375 26.9
Prupe.2G043600 Prunus persica HOM05D007266 ORTHO05D005982 5.8e-17 92.8 334 29.0
Ca_24011_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 1.3e-16 91.7 302 27.5
Ca_24018_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 1.3e-16 91.7 302 27.5
vmacro21145 Vaccinium macrocarpon HOM05D007266 ORTHO05D005982 1.3e-16 91.7 392 26.8
COL.COLO4_06637 Corchorus olitorius HOM05D007266 ORTHO05D005982 2.9e-16 90.5 347 29.1
Medtr8g040640 Medicago truncatula HOM05D007266 ORTHO05D005982 6.4e-16 89.4 303 29.0
Psat4g144600 Pisum sativum HOM05D007266 ORTHO05D005982 8.3e-16 89.0 306 27.8
FAN06G1886 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.1e-15 88.6 336 28.3
FAN03G0408 Fragaria x ananassa HOM05D007266 ORTHO05D005982 2.4e-15 87.4 341 29.6
VMungo1080G1603 Vigna mungo HOM05D007266 ORTHO05D005982 3.2e-15 87.0 367 26.4
DCAR_029711 Daucus carota HOM05D007266 ORTHO05D005982 4.1e-15 86.7 306 30.7
FAN01G0656 Fragaria x ananassa HOM05D007266 ORTHO05D005982 4.1e-15 86.7 338 28.4
TAR633G1403 Trochodendron aralioides HOM05D007266 ORTHO05D005982 7.1e-15 85.9 338 27.8
FvH4_7g03880 Fragaria vesca HOM05D007266 ORTHO05D005982 9.2e-15 85.5 338 29.3
arahy.Tifrunner.gnm1.ann1.78H5KP Arachis hypogaea HOM05D007266 ORTHO05D005982 1.2e-14 85.1 314 25.8
Oeu058685.1 Olea europaea HOM05D007266 ORTHO05D005982 1.2e-14 85.1 387 27.9
Thecc.10G142300 Theobroma cacao HOM05D007266 ORTHO05D005982 2.1e-14 84.3 386 29.3
Phvul.005G018800 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 2.7e-14 84.0 351 27.6
FAN10G1696 Fragaria x ananassa HOM05D007266 ORTHO05D005982 4.6e-14 83.2 359 28.1
TPR.G8521 Trifolium pratense HOM05D007266 ORTHO05D005982 4.6e-14 83.2 307 28.0
Lj3g0024959 Lotus japonicus HOM05D007266 ORTHO05D005982 6.0e-14 82.8 306 28.1
Migut.B01189 Erythranthe guttata HOM05D007266 ORTHO05D005982 1.3e-13 81.6 362 25.7
TWI38G2050 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 1.7e-13 81.3 239 31.8
Dinv11235 Davidia involucrata HOM05D007266 ORTHO05D005982 2.3e-13 80.9 364 29.9
Sc11g0006320 Simmondsia chinensis HOM05D007266 ORTHO05D005982 3.0e-13 80.5 218 31.2
Gorai.009G299100 Gossypium raimondii HOM05D007266 ORTHO05D005982 3.9e-13 80.1 308 32.5
Hma1.2p1_0837F.1_g226230 Hydrangea macrophylla HOM05D007266 ORTHO05D005982 3.9e-13 80.1 393 26.2
Potri.001G031800 Populus trichocarpa HOM05D007266 ORTHO05D005982 3.9e-13 80.1 284 27.5
Lalb_Chr19g0132921 Lupinus albus HOM05D007266 ORTHO05D005982 1.5e-12 78.2 317 27.4
Duzib128G0414 Durio zibethinus HOM05D007266 ORTHO05D005982 1.9e-12 77.8 376 28.7
Manes.04G156300 Manihot esculenta HOM05D007266 ORTHO05D005982 1.9e-12 77.8 337 27.9
SalBow5G4193 Salvia bowleyana HOM05D007266 ORTHO05D005982 5.6e-12 76.3 302 27.5
GSVIVG01036604001 Vitis vinifera HOM05D007266 ORTHO05D005982 9.5e-12 75.5 277 31.8
QL04p021458 Quercus lobata HOM05D007266 ORTHO05D005982 1.2e-11 75.1 155 36.1
QL07p029253 Quercus lobata HOM05D007266 ORTHO05D005982 1.2e-11 75.1 155 36.1
Gohir.A05G283500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 3.6e-11 73.6 306 29.4
Sopen01g040350 Solanum pennellii HOM05D007266 ORTHO05D005982 4.7e-11 73.2 373 27.1
Glyma.15G229400 Glycine max HOM05D007266 ORTHO05D005982 6.2e-11 72.8 309 26.2
HanXRQChr05g0146291 Helianthus annuus HOM05D007266 ORTHO05D005982 8.1e-11 72.4 308 26.6
Lsat_1_v5_gn_1_118261 Lactuca sativa HOM05D007266 ORTHO05D005982 8.1e-11 72.4 259 26.6
Nitab4.5_0004168g0140 Nicotiana tabacum HOM05D007266 ORTHO05D005982 8.1e-11 72.4 330 28.2
arahy.Tifrunner.gnm1.ann1.IJY9PN Arachis hypogaea HOM05D007266 ORTHO05D005982 1.1e-10 72.0 136 33.8
Lalb_Chr01g0007431 Lupinus albus HOM05D007266 ORTHO05D005982 1.4e-10 71.6 120 37.5
vmacro01822 Vaccinium macrocarpon HOM05D003662 ORTHO05D001824 4.0e-10 70.1 167 33.5
Cpa.g.sc169.34 Carica papaya HOM05D007266 ORTHO05D005982 5.2e-10 69.7 134 37.3
Ciclev10001901m.g Citrus clementina HOM05D007266 ORTHO05D005982 6.8e-10 69.3 166 33.1
Nn7g36823 Nelumbo nucifera HOM05D007266 ORTHO05D005982 6.8e-10 69.3 352 27.0
TWI63G1068 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 6.8e-10 69.3 271 28.0
Glyma.11G158200 Glycine max HOM05D007266 ORTHO05D005982 8.9e-10 68.9 196 30.6
Nitab4.5_0002838g0050 Nicotiana tabacum HOM05D007266 ORTHO05D005982 8.9e-10 68.9 327 28.4
Gohir.D05G284500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 1.2e-09 68.6 95 45.3
Lj9C658G11 Lonicera japonica HOM05D007266 ORTHO05D005982 1.2e-09 68.6 161 34.2
Aqoxy1G00397_Aqoxy1G00398 Aquilegia oxysepala HOM05D007266 ORTHO05D005982 2.0e-09 67.8 124 38.7
CANSAT56G2989 Cannabis sativa HOM05D007266 ORTHO05D005982 2.0e-09 67.8 105 40.0
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 2.0e-09 67.8 322 24.8
Glyma.13G191900 Glycine max HOM05D007266 ORTHO05D005982 2.0e-09 67.8 376 23.7
CSS0012064 Camellia sinensis var. sinensis HOM05D003662 ORTHO05D001824 2.6e-09 67.4 181 34.8
PGR044G2654 Punica granatum HOM05D007266 ORTHO05D005982 2.6e-09 67.4 362 25.1
PGSC0003DMG402003286 Solanum tuberosum HOM05D007266 ORTHO05D005982 5.8e-09 66.2 311 25.1
CDE12G0797 Ceratophyllum demersum HOM05D004414 ORTHO05D001824 7.6e-09 65.9 106 35.8
SalBow5G0541 Salvia bowleyana HOM05D003662 ORTHO05D001824 7.6e-09 65.9 210 31.4
Peaxi162Scf00220g00313 Petunia axillaris HOM05D007266 ORTHO05D005982 1.3e-08 65.1 119 37.8
Phvul.011G200200 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 1.3e-08 65.1 310 24.5
Cfa005607 Carpinus fangiana HOM05D003662 ORTHO05D001824 2.2e-08 64.3 159 34.6
PSO541G6545 Papaver somniferum HOM05D003662 ORTHO05D001824 2.2e-08 64.3 97 42.3
VMungo1127G1999 Vigna mungo HOM05D007266 ORTHO05D005982 2.2e-08 64.3 321 23.4
Migut.B00615 Erythranthe guttata HOM05D003662 ORTHO05D001824 2.9e-08 63.9 167 35.9
Cc02_g21620 Coffea canephora HOM05D003662 ORTHO05D001824 3.7e-08 63.5 175 32.0
FAN03G2213 Fragaria x ananassa HOM05D007266 ORTHO05D005982 3.7e-08 63.5 94 39.4
Sabra03G0144500 Salix brachista HOM05D007266 ORTHO05D005982 4.9e-08 63.2 110 37.3
Duzib052G1087 Durio zibethinus HOM05D003662 ORTHO05D001824 6.4e-08 62.8 161 32.9
Haze_10685 Corylus avellana HOM05D003662 ORTHO05D001824 1.1e-07 62.0 127 36.2
PSO135G0681 Papaver somniferum HOM05D007266 ORTHO05D005982 1.1e-07 62.0 259 28.2
Potri.003G193800 Populus trichocarpa HOM05D007266 ORTHO05D005982 1.1e-07 62.0 243 28.4
Prupe.8G062200 Prunus persica HOM05D003662 ORTHO05D001824 1.1e-07 62.0 155 32.9
Rhsim11G0136400 Rhododendron simsii HOM05D003662 ORTHO05D001824 1.1e-07 62.0 167 30.5
TWI23G0811 Tripterygium wilfordii HOM05D003662 ORTHO05D001824 1.4e-07 61.6 151 35.8
MSTRG.16578 Avicennia marina HOM05D003662 ORTHO05D001824 1.9e-07 61.2 197 32.5
Dinv09038 Davidia involucrata HOM05D003662 ORTHO05D001824 1.9e-07 61.2 107 39.3
PSO781G0010 Papaver somniferum HOM05D003662 ORTHO05D001824 1.9e-07 61.2 97 40.2
Sed0005558 Sechium edule HOM05D003662 ORTHO05D001824 2.4e-07 60.8 149 30.9
QL11p020558 Quercus lobata HOM05D003662 ORTHO05D001824 3.2e-07 60.5 124 34.7
Sp6g35890 Schrenkiella parvula HOM05D008873 ORTHO05D005982 3.2e-07 60.5 300 28.7
Solyc01g096630.3 Solanum lycopersicum HOM05D007266 ORTHO05D005982 3.2e-07 60.5 141 36.2
CSS0002395 Camellia sinensis var. sinensis HOM05D003662 ORTHO05D001824 4.1e-07 60.1 151 35.1
Gorai.012G141800 Gossypium raimondii HOM05D003662 ORTHO05D001824 4.1e-07 60.1 164 31.7
Manes.11G007700 Manihot esculenta HOM05D007266 ORTHO05D005982 4.1e-07 60.1 324 24.7
PSO384G1467 Papaver somniferum HOM05D007266 ORTHO05D005982 4.1e-07 60.1 248 30.2
Cpa.g.sc223.14 Carica papaya HOM05D004414 ORTHO05D001824 5.4e-07 59.7 112 40.2
ECA234G0654 Erigeron canadensis HOM05D000867 ORTHO05D000864 5.4e-07 59.7 112 38.4
Gohir.A13G066800 Gossypium hirsutum HOM05D003662 ORTHO05D001824 7.1e-07 59.3 103 37.9
Gohir.D04G154500 Gossypium hirsutum HOM05D003662 ORTHO05D001824 7.1e-07 59.3 164 31.7
ATR0753G089 Amborella trichopoda HOM05D003662 ORTHO05D001824 9.2e-07 58.9 153 32.7
MSTRG.5266 Avicennia marina HOM05D003662 ORTHO05D001824 9.2e-07 58.9 102 39.2
Glyma.08G073300 Glycine max HOM05D003662 ORTHO05D001824 9.2e-07 58.9 118 36.4
SGA_v2.0_scaffold124G33643 Striga asiatica HOM05D007266 ORTHO05D005982 9.2e-07 58.9 93 41.9
Aa31LG3G6540 Aethionema arabicum HOM05D008873 ORTHO05D005982 1.2e-06 58.5 193 29.0
AL3G23970 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 1.2e-06 58.5 231 32.0
Lsat_1_v5_gn_9_117361 Lactuca sativa HOM05D003662 ORTHO05D001824 1.2e-06 58.5 105 37.1
Phvul.006G206900 Phaseolus vulgaris HOM05D003662 ORTHO05D001824 1.2e-06 58.5 104 39.4
DCAR_021854 Daucus carota HOM05D003662 ORTHO05D001824 1.6e-06 58.2 112 39.3
Gohir.D13G054800 Gossypium hirsutum HOM05D003662 ORTHO05D001824 1.6e-06 58.2 142 33.8
Manes.14G166300 Manihot esculenta HOM05D003662 ORTHO05D001824 1.6e-06 58.2 187 31.6
Hund00056 Selenicereus undatus HOM05D003662 ORTHO05D001824 1.6e-06 58.2 128 38.3
SGA_v2.0_scaffold124G33637 Striga asiatica HOM05D004414 ORTHO05D001824 1.6e-06 58.2 103 38.8
DCAR_001790 Daucus carota HOM05D003662 ORTHO05D001824 2.1e-06 57.8 168 28.0
Dinv24197 Davidia involucrata HOM05D003662 ORTHO05D001824 2.1e-06 57.8 150 33.3
Gohir.A04G113200 Gossypium hirsutum HOM05D003662 ORTHO05D001824 2.1e-06 57.8 167 34.1
Gorai.013G061600 Gossypium raimondii HOM05D003662 ORTHO05D001824 2.1e-06 57.8 142 33.8
HanXRQChr11g0341241 Helianthus annuus HOM05D007266 ORTHO05D005982 2.1e-06 57.8 197 32.0
SalBow6G1900 Salvia bowleyana HOM05D003662 ORTHO05D001824 2.1e-06 57.8 142 36.6
SalBow6G5751 Salvia bowleyana HOM05D003662 ORTHO05D001824 2.1e-06 57.8 142 36.6
VMungo0540G1102 Vigna mungo HOM05D003662 ORTHO05D001824 2.1e-06 57.8 106 39.6
BcaB04g18684 Brassica carinata HOM05D008873 ORTHO05D005982 2.7e-06 57.4 115 35.7
Potri.001G205800 Populus trichocarpa HOM05D003662 ORTHO05D001824 2.7e-06 57.4 128 33.6
Sp3g10530 Schrenkiella parvula HOM05D008873 ORTHO05D005982 2.7e-06 57.4 215 32.1
arahy.Tifrunner.gnm1.ann1.TKBB16 Arachis hypogaea HOM05D003662 ORTHO05D001824 3.5e-06 57.0 113 37.2
COL.COLO4_09984 Corchorus olitorius HOM05D004414 ORTHO05D001824 3.5e-06 57.0 122 37.7
HanXRQChr16g0514001 Helianthus annuus HOM05D003662 ORTHO05D001824 3.5e-06 57.0 114 35.1
Thecc.02G139400 Theobroma cacao HOM05D003662 ORTHO05D001824 3.5e-06 57.0 228 29.4
arahy.Tifrunner.gnm1.ann1.9W20Y7 Arachis hypogaea HOM05D003662 ORTHO05D001824 4.6e-06 56.6 106 36.8
Ciclev10027956m.g Citrus clementina HOM05D003662 ORTHO05D001824 4.6e-06 56.6 141 34.8
Hund13341 Selenicereus undatus HOM05D004414 ORTHO05D001824 4.6e-06 56.6 142 31.0
Thecc.10G167000 Theobroma cacao HOM05D004414 ORTHO05D001824 4.6e-06 56.6 122 38.5
TAR376G0165 Trochodendron aralioides HOM05D003662 ORTHO05D001824 4.6e-06 56.6 123 38.2
MELO3C012461.2 Cucumis melo HOM05D004414 ORTHO05D001824 6.0e-06 56.2 111 36.0
Eucgr.G00771 Eucalyptus grandis HOM05D003662 ORTHO05D001824 6.0e-06 56.2 200 31.5
HanXRQChr10g0295841 Helianthus annuus HOM05D003662 ORTHO05D001824 6.0e-06 56.2 96 37.5
MBI02_g08727_MAGBIO Magnolia biondii HOM05D003662 ORTHO05D001824 6.0e-06 56.2 95 41.1
Aqoxy6G00804 Aquilegia oxysepala HOM05D003662 ORTHO05D001824 7.8e-06 55.8 118 38.1
AT3G12320 Arabidopsis thaliana HOM05D008873 ORTHO05D005982 7.8e-06 55.8 237 30.0
BcaC01g04052 Brassica carinata HOM05D008873 ORTHO05D005982 7.8e-06 55.8 220 30.9
C03p45590 Brassica napus HOM05D008873 ORTHO05D005982 7.8e-06 55.8 220 30.9
BolC3t16836H Brassica oleracea HOM05D008873 ORTHO05D005982 7.8e-06 55.8 220 30.9
CSS0040931 Camellia sinensis var. sinensis HOM05D007266 ORTHO05D005982 7.8e-06 55.8 150 34.7
CiPaw.05G036400 Carya illinoinensis HOM05D003662 ORTHO05D001824 7.8e-06 55.8 149 34.2
Haze_03067 Corylus avellana HOM05D004414 ORTHO05D001824 7.8e-06 55.8 123 37.4
Dinv32008 Davidia involucrata HOM05D007266 ORTHO05D005982 7.8e-06 55.8 191 29.3
Thhalv10021314m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 7.8e-06 55.8 221 31.2
Manes.06G010600 Manihot esculenta HOM05D003662 ORTHO05D001824 7.8e-06 55.8 111 36.0
Medtr2g008750 Medicago truncatula HOM05D003662 ORTHO05D001824 7.8e-06 55.8 106 37.7
QL04p021455 Quercus lobata HOM05D007266 ORTHO05D005982 7.8e-06 55.8 169 32.0
QL07p029255 Quercus lobata HOM05D007266 ORTHO05D005982 7.8e-06 55.8 169 32.0
TPR.G13626 Trifolium pratense HOM05D003662 ORTHO05D001824 7.8e-06 55.8 106 34.9
TAR369G0352 Trochodendron aralioides HOM05D004414 ORTHO05D001824 7.8e-06 55.8 164 29.9


User provided reference genes

Program Settings