Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.12g064210 Amaranthus hybridus HOM05D000509 ORTHO05D006393 4.0e-57 224.6 116 100.0
Ah.04g163760 Amaranthus hybridus HOM05D000509 ORTHO05D006393 2.6e-35 152.1 115 71.3
EL10Ac4g09051 Beta vulgaris HOM05D000509 ORTHO05D006393 1.4e-33 146.4 116 65.5
EL10Ac8g20190 Beta vulgaris HOM05D000509 ORTHO05D006393 9.4e-30 133.7 116 62.9
AUR62004883 Chenopodium quinoa HOM05D000509 ORTHO05D006393 1.2e-29 133.3 116 62.9
AUR62001076 Chenopodium quinoa HOM05D000509 ORTHO05D006393 1.2e-24 116.7 149 49.7
Hund14886 Selenicereus undatus HOM05D000509 ORTHO05D006393 2.9e-23 112.1 119 56.3
CSS0014656 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 2.0e-19 99.4 108 54.6
Rhsim07G0117300 Rhododendron simsii HOM05D000509 ORTHO05D006393 7.5e-19 97.4 119 49.6
Dinv41795 Davidia involucrata HOM05D000509 ORTHO05D006393 4.8e-18 94.7 107 48.6
Gohir.A02G020500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 4.1e-17 91.7 118 49.2
Gohir.A08G013720 Gossypium hirsutum HOM05D000509 ORTHO05D006393 4.1e-17 91.7 118 49.2
Gorai.005G030400 Gossypium raimondii HOM05D000509 ORTHO05D006393 4.1e-17 91.7 113 49.6
Gohir.D02G024500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 5.3e-17 91.3 107 49.5
CiPaw.02G030900 Carya illinoinensis HOM05D000509 ORTHO05D006393 7.0e-17 90.9 107 47.7
CiPaw.01G061300 Carya illinoinensis HOM05D000509 ORTHO05D006393 9.1e-17 90.5 114 50.0
Cpa.g.sc11.3 Carica papaya HOM05D000509 ORTHO05D006393 2.0e-16 89.4 114 44.7
MBI17_g24690_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 7.7e-16 87.4 107 50.5
Thecc.04G199400 Theobroma cacao HOM05D000509 ORTHO05D006393 1.0e-15 87.0 106 49.1
Aqoxy2G02281 Aquilegia oxysepala HOM05D000509 ORTHO05D006393 1.3e-15 86.7 107 44.9
CSS0014005 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 1.7e-15 86.3 108 50.0
GSVIVG01008341001 Vitis vinifera HOM05D000509 ORTHO05D006393 2.2e-15 85.9 115 45.2
Dinv32484 Davidia involucrata HOM05D000509 ORTHO05D006393 6.5e-15 84.3 96 54.2
Nn6g33420 Nelumbo nucifera HOM05D000509 ORTHO05D006393 8.5e-15 84.0 119 48.7
VMungo1383G0114 Vigna mungo HOM05D000509 ORTHO05D006393 8.5e-15 84.0 107 45.8
arahy.Tifrunner.gnm1.ann1.E8SAKG Arachis hypogaea HOM05D000509 ORTHO05D006393 1.1e-14 83.6 109 45.9
arahy.Tifrunner.gnm1.ann1.NYL5F5 Arachis hypogaea HOM05D000509 ORTHO05D006393 1.1e-14 83.6 109 45.9
Cfa003925 Carpinus fangiana HOM05D000509 ORTHO05D006393 1.1e-14 83.6 116 44.0
Haze_15506 Corylus avellana HOM05D000509 ORTHO05D006393 1.5e-14 83.2 116 41.4
Glyma.18G233000 Glycine max HOM05D000509 ORTHO05D006393 1.9e-14 82.8 107 46.7
Rhsim07G0117600 Rhododendron simsii HOM05D000509 ORTHO05D006393 1.9e-14 82.8 117 44.4
Ca_07920_v3 Cicer arietinum L. HOM05D000509 ORTHO05D006393 3.2e-14 82.0 106 45.3
Duzib151G0093 Durio zibethinus HOM05D000509 ORTHO05D006393 3.2e-14 82.0 107 48.6
Actinidia12704 Actinidia chinensis HOM05D000509 ORTHO05D006393 4.2e-14 81.6 120 45.8
Rhsim07G0118400 Rhododendron simsii HOM05D000509 ORTHO05D006393 4.2e-14 81.6 99 48.5
Prupe.2G170600 Prunus persica HOM05D000509 ORTHO05D006393 5.5e-14 81.3 113 44.2
TWI14G0500 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 5.5e-14 81.3 108 47.2
Phvul.008G065500 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 9.4e-14 80.5 114 43.9
QL93p0259_0027 Quercus lobata HOM05D000509 ORTHO05D006393 9.4e-14 80.5 118 42.4
Actinidia33421 Actinidia chinensis HOM05D001542 ORTHO05D001416 1.2e-13 80.1 110 47.3
Phvul.008G062400 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 1.6e-13 79.7 115 43.5
VMungo0540G0837 Vigna mungo HOM05D000509 ORTHO05D006393 4.7e-13 78.2 114 43.0
Ciclev10022504m.g Citrus clementina HOM05D000509 ORTHO05D006393 6.1e-13 77.8 116 46.6
MD07G1137000 Malus domestica HOM05D000509 ORTHO05D006393 6.1e-13 77.8 113 43.4
Medtr8g095630 Medicago truncatula HOM05D000509 ORTHO05D006393 6.1e-13 77.8 107 46.7
Manes.10G122200 Manihot esculenta HOM05D000509 ORTHO05D006393 8.0e-13 77.4 117 44.4
TAR636G2420 Trochodendron aralioides HOM05D000509 ORTHO05D006393 8.0e-13 77.4 116 46.6
FvH4_7g14280 Fragaria vesca HOM05D000509 ORTHO05D006393 3.0e-12 75.5 106 46.2
QL01p005382 Quercus lobata HOM05D000509 ORTHO05D006393 3.0e-12 75.5 118 40.7
MSTRG.20833 Avicennia marina HOM05D000509 ORTHO05D006393 4.0e-12 75.1 108 44.4
CAN.G78.80 Capsicum annuum HOM05D000509 ORTHO05D006393 4.0e-12 75.1 107 42.1
Prupe.1G174800 Prunus persica HOM05D000509 ORTHO05D006393 4.0e-12 75.1 112 42.9
CANSAT56G2260 Cannabis sativa HOM05D000509 ORTHO05D006393 5.2e-12 74.7 112 42.9
DCAR_019105 Daucus carota HOM05D000509 ORTHO05D006393 6.8e-12 74.3 103 45.6
Manes.07G019100 Manihot esculenta HOM05D000509 ORTHO05D006393 8.8e-12 73.9 93 47.3
MBI17_g24691_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 1.5e-11 73.2 95 49.5
PGR042G3203 Punica granatum HOM05D000509 ORTHO05D006393 1.5e-11 73.2 107 42.1
vmacro20943 Vaccinium macrocarpon HOM05D000509 ORTHO05D006393 2.0e-11 72.8 96 49.0
TWI23G0635 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 3.4e-11 72.0 118 44.1
RcHm_v2.0_Chr1g0355271 Rosa chinensis HOM05D000509 ORTHO05D006393 4.4e-11 71.6 78 48.7
Nitab4.5_0000583g0080 Nicotiana tabacum HOM05D000509 ORTHO05D006393 5.7e-11 71.2 103 40.8
Sabra02G0116600 Salix brachista HOM05D000509 ORTHO05D006393 9.8e-11 70.5 117 41.0
SalBow6G4776 Salvia bowleyana HOM05D000509 ORTHO05D006393 1.3e-10 70.1 111 38.7
PGSC0003DMG400000042 Solanum tuberosum HOM05D000509 ORTHO05D006393 1.3e-10 70.1 107 38.3
Lalb_Chr03g0038131 Lupinus albus HOM05D000509 ORTHO05D006393 1.7e-10 69.7 104 43.3
MD01G1060700 Malus domestica HOM05D000509 ORTHO05D006393 1.7e-10 69.7 78 46.2
Medtr7g077710 Medicago truncatula HOM05D000509 ORTHO05D006393 2.2e-10 69.3 95 47.4
FAN10G1528 Fragaria x ananassa HOM05D000509 ORTHO05D006393 2.8e-10 68.9 72 50.0
FAN10G1645 Fragaria x ananassa HOM05D000509 ORTHO05D006393 2.8e-10 68.9 72 50.0
Psat3g108360 Pisum sativum HOM05D000509 ORTHO05D006393 3.7e-10 68.6 107 43.9
CDE09G0401 Ceratophyllum demersum HOM05D000509 ORTHO05D006393 4.8e-10 68.2 106 41.5
FAN06G1484 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.1e-09 67.0 94 46.8
FAN06G3105 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.1e-09 67.0 94 46.8
Potri.016G069200 Populus trichocarpa HOM05D000509 ORTHO05D006393 1.4e-09 66.6 117 39.3
Eucgr.B00880 Eucalyptus grandis HOM05D000509 ORTHO05D006393 1.8e-09 66.2 108 42.6
Eucgr.B00993 Eucalyptus grandis HOM05D000509 ORTHO05D006393 1.8e-09 66.2 108 42.6
PSO782G0796 Papaver somniferum HOM05D000509 ORTHO05D006393 1.8e-09 66.2 79 45.6
THA.LOC104798540 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 1.8e-09 66.2 106 41.5
PSO478G1119 Papaver somniferum HOM05D000509 ORTHO05D006393 2.4e-09 65.9 74 47.3
Solyc01g094630.3 Solanum lycopersicum HOM05D000509 ORTHO05D006393 3.1e-09 65.5 96 40.6
Zm00001eb039300 Zea mays HOM05D000509 ORTHO05D006393 3.1e-09 65.5 112 39.3
Cc02_g38030 Coffea canephora HOM05D000509 ORTHO05D006393 5.4e-09 64.7 107 42.1
Lj1g0015308 Lotus japonicus HOM05D000509 ORTHO05D006393 5.4e-09 64.7 108 42.6
Nitab4.5_0006762g0030 Nicotiana tabacum HOM05D000509 ORTHO05D006393 5.4e-09 64.7 111 37.8
SGA_v2.0_scaffold95G28834 Striga asiatica HOM05D000509 ORTHO05D006393 7.0e-09 64.3 112 36.6
FAN03G2840 Fragaria x ananassa HOM05D000509 ORTHO05D006393 9.1e-09 63.9 106 42.5
QL08p048801 Quercus lobata HOM05D000509 ORTHO05D006393 9.1e-09 63.9 95 42.1
unitig_0.g1262 Utricularia gibba HOM05D000509 ORTHO05D006393 9.1e-09 63.9 106 39.6
C08p36230 Brassica napus HOM05D000509 ORTHO05D006393 1.2e-08 63.5 90 42.2
BolC8t51205H Brassica oleracea HOM05D000509 ORTHO05D006393 1.2e-08 63.5 90 42.2
GSVIVG01003391001 Vitis vinifera HOM05D000509 ORTHO05D006393 1.2e-08 63.5 87 42.5
A09p53420 Brassica napus HOM05D000509 ORTHO05D006393 1.6e-08 63.2 85 42.4
BraA09t40768Z Brassica rapa HOM05D000509 ORTHO05D006393 1.6e-08 63.2 85 42.4
ECA233G2837 Erigeron canadensis HOM05D000509 ORTHO05D006393 2.0e-08 62.8 107 41.1
Sopen01g038440 Solanum pennellii HOM05D000509 ORTHO05D006393 2.7e-08 62.4 88 43.2
Lsat_1_v5_gn_8_97941 Lactuca sativa HOM05D002211 ORTHO05D002206 4.5e-08 61.6 106 39.6
SEGI_38599 Sequoiadendron giganteum HOM05D000509 ORTHO05D006393 4.5e-08 61.6 85 42.4
TPR.G37720 Trifolium pratense HOM05D000509 ORTHO05D006393 4.5e-08 61.6 95 42.1
QL10p007195 Quercus lobata HOM05D000509 ORTHO05D006393 7.7e-08 60.8 61 47.5
ATR0680G086 Amborella trichopoda HOM05D000509 ORTHO05D006393 2.3e-07 59.3 95 43.2
Sp5g02030 Schrenkiella parvula HOM05D000509 ORTHO05D006393 2.9e-07 58.9 84 39.3
Migut.B01755 Erythranthe guttata HOM05D000509 ORTHO05D006393 6.6e-07 57.8 119 39.5
A04p01140 Brassica napus HOM05D000509 ORTHO05D006393 1.1e-06 57.0 83 42.2
BraA04t15830Z Brassica rapa HOM05D000509 ORTHO05D006393 1.1e-06 57.0 83 42.2
Peaxi162Scf00020g00322 Petunia axillaris HOM05D000509 ORTHO05D006393 1.5e-06 56.6 79 48.1
CARHR171710 Cardamine hirsuta HOM05D000509 ORTHO05D006393 1.9e-06 56.2 80 40.0
Sed0001004 Sechium edule HOM05D000509 ORTHO05D006393 1.9e-06 56.2 85 43.5
Aa31LG1G27330 Aethionema arabicum HOM05D000509 ORTHO05D006393 2.5e-06 55.8 64 48.4
Thhalv10006311m.g Eutrema salsugineum HOM05D000509 ORTHO05D006393 2.5e-06 55.8 73 41.1
THA.LOC104820589 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 3.3e-06 55.5 95 35.8
COL.COLO4_20186 Corchorus olitorius HOM05D000509 ORTHO05D006393 5.5e-06 54.7 128 37.5
MELO3C021209.2 Cucumis melo HOM05D000509 ORTHO05D006393 7.2e-06 54.3 79 41.8
FAN01G0359 Fragaria x ananassa HOM05D000509 ORTHO05D006393 9.5e-06 53.9 106 38.7
QL11p053603 Quercus lobata HOM05D000509 ORTHO05D006393 9.5e-06 53.9 48 50.0
Sc09g0004100 Simmondsia chinensis HOM05D000509 ORTHO05D006393 9.5e-06 53.9 82 40.2


User provided reference genes

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