Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 4.4e-197 691.0 337 100.0
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 2.7e-125 452.6 331 68.6
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 2.9e-116 422.5 308 66.6
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 3.8e-116 422.2 318 65.4
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 5.0e-116 421.8 273 72.9
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 6.6e-116 421.4 291 69.1
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 1.1e-115 420.6 315 65.1
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 1.5e-115 420.2 343 60.9
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 1.5e-115 420.2 343 60.9
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 2.5e-115 419.5 300 66.0
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 5.6e-115 418.3 295 67.1
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 1.6e-114 416.8 269 72.5
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 2.1e-114 416.4 281 68.7
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 2.8e-114 416.0 269 72.5
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 2.8e-114 416.0 271 71.2
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 3.6e-114 415.6 285 69.5
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 4.7e-114 415.2 313 64.2
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 8.0e-114 414.5 301 65.1
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 8.0e-114 414.5 271 70.8
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 1.0e-113 414.1 296 66.2
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 1.4e-113 413.7 269 71.0
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 1.4e-113 413.7 301 64.8
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 1.8e-113 413.3 336 61.3
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 1.8e-113 413.3 277 70.4
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 2.3e-113 412.9 298 66.8
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 5.2e-113 411.8 280 69.3
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 5.2e-113 411.8 270 71.5
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 8.9e-113 411.0 269 68.4
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 8.9e-113 411.0 301 65.1
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 1.2e-112 410.6 312 65.1
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 1.2e-112 410.6 299 65.6
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 3.4e-112 409.1 303 63.4
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 3.4e-112 409.1 331 61.9
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 4.4e-112 408.7 323 62.5
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 7.5e-112 407.9 319 61.8
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 7.5e-112 407.9 302 66.6
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 9.8e-112 407.5 317 62.8
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 2.2e-111 406.4 295 65.8
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 2.2e-111 406.4 296 69.3
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 2.2e-111 406.4 277 67.9
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 4.9e-111 405.2 339 61.7
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 1.4e-110 403.7 297 66.7
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 1.8e-110 403.3 280 68.2
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 1.8e-110 403.3 267 69.7
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 1.8e-110 403.3 288 65.6
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 1.2e-109 400.6 316 60.8
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 1.2e-109 400.6 295 65.8
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 1.6e-109 400.2 269 70.3
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 2.7e-109 399.4 322 61.2
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 7.8e-109 397.9 287 66.2
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 1.0e-108 397.5 282 67.0
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 1.0e-108 397.5 297 65.7
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 1.0e-108 397.5 284 65.8
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 2.9e-108 396.0 278 66.5
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 3.9e-108 395.6 311 61.7
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 3.9e-108 395.6 278 66.9
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.1e-107 394.0 306 62.1
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 2.5e-107 392.9 269 69.5
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 2.5e-107 392.9 310 59.7
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 9.5e-107 391.0 342 58.5
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 1.2e-106 390.6 285 64.9
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 1.2e-106 390.6 280 65.4
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 1.6e-106 390.2 326 58.3
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 2.1e-106 389.8 271 68.6
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 4.7e-106 388.7 288 63.9
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 6.2e-106 388.3 284 64.8
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 8.0e-106 387.9 268 66.0
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 1.0e-105 387.5 293 63.5
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 1.0e-105 387.5 264 67.8
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 1.8e-105 386.7 263 67.7
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 3.1e-105 386.0 271 66.1
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 3.1e-105 386.0 302 61.9
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 8.9e-105 384.4 297 62.6
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 8.9e-105 384.4 295 63.7
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 1.2e-104 384.0 285 65.6
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 1.5e-104 383.6 279 63.8
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 2.6e-104 382.9 301 62.5
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 4.4e-104 382.1 290 63.8
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 9.8e-104 380.9 343 56.9
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 2.2e-103 379.8 278 66.2
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 2.2e-103 379.8 303 60.7
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 2.2e-103 379.8 263 68.1
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 2.2e-103 379.8 309 60.5
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 2.9e-103 379.4 300 61.3
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 1.1e-102 377.5 337 57.9
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 1.4e-102 377.1 322 57.8
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 2.4e-102 376.3 344 56.7
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 5.4e-102 375.2 315 59.7
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 1.7e-100 370.2 301 61.5
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 3.9e-100 369.0 354 54.5
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 1.9e-99 366.7 271 63.8
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 4.3e-99 365.5 363 53.4
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 5.6e-99 365.2 329 56.8
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 7.3e-99 364.8 288 60.8
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 1.6e-98 363.6 271 62.4
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 2.3e-97 359.8 307 58.3
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 4.0e-97 359.0 307 58.3
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 2.0e-96 356.7 278 62.2
Dinv38324 Davidia involucrata HOM05D003864 ORTHO05D004658 2.6e-96 356.3 308 59.1
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 4.4e-96 355.5 327 57.5
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 5.8e-96 355.1 311 58.2
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 3.7e-95 352.4 306 57.5
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 5.4e-94 348.6 269 61.3
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 1.6e-93 347.1 315 57.1
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 2.1e-93 346.7 228 69.7
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 3.0e-92 342.8 312 56.1
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 3.9e-92 342.4 352 53.7
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 5.1e-92 342.0 269 62.1
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 2.5e-91 339.7 302 56.3
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 4.0e-89 332.4 294 56.5
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 2.6e-88 329.7 327 54.1
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 2.2e-87 326.6 279 56.3
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 1.1e-86 324.3 325 51.7
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 1.1e-86 324.3 325 51.7
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 3.2e-86 322.8 328 53.4
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 3.2e-86 322.8 272 60.7
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 6.0e-85 318.5 351 53.0
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 1.7e-84 317.0 301 54.2
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 8.6e-84 314.7 259 57.9
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 2.5e-83 313.2 263 55.9
AagrBONN_evm.TU.Sc2ySwM_344.1910 Anthoceros agrestis HOM05D003864 ORTHO05D004658 5.6e-83 312.0 279 55.6
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 7.3e-83 311.6 291 54.0
Pp3c13_19760 Physcomitrium patens HOM05D003864 ORTHO05D004658 9.6e-83 311.2 265 53.6
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 8.1e-82 308.1 340 52.9
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 1.5e-80 303.9 297 52.2
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 5.8e-80 302.0 355 47.0
Sc25g0004750 Simmondsia chinensis HOM05D003864 ORTHO05D004658 1.1e-78 297.7 233 62.7
MBI19_g44903_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 3.2e-78 296.2 250 58.4
SMO356G0587 Selaginella moellendorffii HOM05D003864 ORTHO05D004658 4.3e-75 285.8 267 53.9
CARHR133840 Cardamine hirsuta HOM05D003864 ORTHO05D004658 4.0e-73 279.3 184 70.7
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 3.8e-71 272.7 336 45.5
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 8.4e-71 271.6 336 45.2
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 3.2e-70 269.6 321 45.5
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 2.7e-69 266.5 312 46.8
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 7.9e-69 265.0 310 46.1
CBR_g37156 Chara braunii HOM05D003864 ORTHO05D004658 5.1e-68 262.3 275 47.3
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 2.1e-66 256.9 317 44.8
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 1.8e-65 253.8 305 45.9
QL06p007391 Quercus lobata HOM05D003864 ORTHO05D004658 2.7e-61 240.0 184 62.5
CSS0001944 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.9e-59 233.8 193 62.2
CSS0038005 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 2.5e-59 233.4 193 61.7
Dinv44425 Davidia involucrata HOM05D003864 ORTHO05D004658 5.6e-59 232.3 155 69.0
SalBow2G1899 Salvia bowleyana HOM05D003864 ORTHO05D004658 4.8e-58 229.2 155 67.7
Solyc06g054530.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 4.0e-57 226.1 163 65.0
Sopen06g019600 Solanum pennellii HOM05D003864 ORTHO05D004658 1.5e-56 224.2 163 65.0
PGSC0003DMG400010656 Solanum tuberosum HOM05D003864 ORTHO05D004658 2.0e-56 223.8 163 63.8
BolC3t14979H Brassica oleracea HOM05D003864 ORTHO05D004658 2.6e-56 223.4 171 63.7
Psat7g088240 Pisum sativum HOM05D003864 ORTHO05D004658 3.4e-56 223.0 192 58.9
Sopen01g029580 Solanum pennellii HOM05D003864 ORTHO05D004658 7.6e-56 221.9 227 51.1
unitig_748.g8369 Utricularia gibba HOM05D000472 ORTHO05D000344 1.0e-55 221.5 166 66.3
C04p08680 Brassica napus HOM05D003864 ORTHO05D004658 5.5e-54 215.7 173 60.1
MCO15G076 Micromonas commoda HOM05D003864 ORTHO05D004658 4.3e-51 206.1 242 44.6
Cre13.g608000 Chlamydomonas reinhardtii HOM05D003864 ORTHO05D004658 5.7e-51 205.7 291 41.9
FAN12G3853 Fragaria x ananassa HOM05D003864 ORTHO05D004658 5.7e-51 205.7 231 46.3
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 9.6e-51 204.9 534 29.4
PRCOL_00006073 Prasinoderma coloniale HOM05D003864 ORTHO05D004658 9.0e-49 198.4 345 34.8
unitig_748.g8370 Utricularia gibba HOM05D003864 ORTHO05D004658 4.1e-41 172.9 117 64.1
BcaC02g12030 Brassica carinata HOM05D003864 ORTHO05D004658 1.2e-40 171.4 111 67.6
HanXRQChr13g0411231 Helianthus annuus HOM05D003864 ORTHO05D004658 5.9e-40 169.1 190 48.9
BolC4t22460H Brassica oleracea HOM05D003864 ORTHO05D004658 2.9e-39 166.8 133 58.6
CDE12G0314 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 7.2e-38 162.2 106 69.8
HanXRQChr13g0411221 Helianthus annuus HOM05D003864 ORTHO05D004658 7.2e-38 162.2 108 69.4
MSTRG.21813 Avicennia marina HOM05D003864 ORTHO05D004658 9.4e-38 161.8 104 70.2
SEGI_14152 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 3.6e-37 159.8 127 57.5
CDE12G0924 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 1.8e-36 157.5 123 57.7
QL06p007393 Quercus lobata HOM05D003864 ORTHO05D004658 7.2e-30 135.6 82 75.6
CSS0041699 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.0e-28 131.7 187 40.1
CSS0011053 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 6.7e-28 129.0 87 65.5
CSS0003637 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 2.0e-27 127.5 134 50.0
SEGI_31487 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 1.0e-23 115.2 90 56.7
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 2.2e-23 114.0 81 63.0
RcHm_v2.0_Chr4g0421071 Rosa chinensis HOM05D003864 ORTHO05D004658 2.1e-21 107.5 138 43.5
Actinidia25721 Actinidia chinensis HOM05D003864 ORTHO05D004658 1.4e-17 94.7 74 55.4
RcHm_v2.0_Chr4g0421081 Rosa chinensis HOM05D003864 ORTHO05D004658 2.0e-16 90.9 60 68.3
SEGI_13555 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 1.7e-15 87.8 72 55.6
CSS0015623 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.2e-13 81.6 50 72.0
Zm00001eb400060 Zea mays HOM05D003864 ORTHO05D004658 4.4e-11 73.2 51 68.6
Medtr8g027510 Medicago truncatula HOM05D003864 ORTHO05D004658 1.1e-09 68.6 37 86.5
Dinv02075 Davidia involucrata HOM05D003864 ORTHO05D035062 2.0e-08 64.3 55 52.7
Dinv08007 Davidia involucrata HOM05D003864 ORTHO05D035062 1.3e-07 61.6 53 52.8


User provided reference genes

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