Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.12g063640 Amaranthus hybridus HOM05D000494 ORTHO05D018141 9.6e-28 125.9 57 100.0
EL10Ac2g02558 Beta vulgaris HOM05D000494 ORTHO05D000556 2.8e-19 97.8 55 74.5
Sc09g0008730 Simmondsia chinensis HOM05D000494 ORTHO05D000556 3.1e-18 94.4 55 74.5
AUR62032363 Chenopodium quinoa HOM05D000494 ORTHO05D000556 6.9e-18 93.2 57 73.7
AUR62024858 Chenopodium quinoa HOM05D000494 ORTHO05D000556 1.2e-17 92.4 55 74.5
Hund03008 Selenicereus undatus HOM05D000494 ORTHO05D000556 7.6e-17 89.7 54 68.5
TAR636G3256 Trochodendron aralioides HOM05D000494 ORTHO05D000556 3.6e-14 80.9 56 62.5
QL12p031598 Quercus lobata HOM05D000494 ORTHO05D018141 1.4e-13 79.0 55 67.3
Lj7A715T36 Lonicera japonica HOM05D000494 ORTHO05D000556 5.1e-13 77.0 55 65.5
FAN20G1133 Fragaria x ananassa HOM05D000494 ORTHO05D000556 6.7e-13 76.6 38 84.2
PGR044G2549 Punica granatum HOM05D000494 ORTHO05D000556 1.9e-12 75.1 52 65.4
TAR625G1250 Trochodendron aralioides HOM05D000494 ORTHO05D000556 1.9e-12 75.1 55 60.0
FAN27G0323 Fragaria x ananassa HOM05D000494 ORTHO05D000556 2.5e-12 74.7 55 63.6
MBI04_g08376_MAGBIO Magnolia biondii HOM05D000494 ORTHO05D000556 2.5e-12 74.7 39 76.9
FAN24G3041 Fragaria x ananassa HOM05D000494 ORTHO05D000556 3.3e-12 74.3 39 79.5
Prupe.1G471100 Prunus persica HOM05D000494 ORTHO05D000556 3.3e-12 74.3 55 61.8
Sabra06G0194400 Salix brachista HOM05D000494 ORTHO05D000556 3.3e-12 74.3 55 60.0
PSO017G6808 Papaver somniferum HOM05D000494 ORTHO05D000556 5.7e-12 73.6 57 59.6
PSO170G2362 Papaver somniferum HOM05D000494 ORTHO05D000556 5.7e-12 73.6 57 59.6
RcHm_v2.0_Chr6g0298921 Rosa chinensis HOM05D000494 ORTHO05D000556 5.7e-12 73.6 39 79.5
CiPaw.08G014400 Carya illinoinensis HOM05D000494 ORTHO05D000556 7.4e-12 73.2 54 64.8
FAN15G0105 Fragaria x ananassa HOM05D000494 ORTHO05D000556 1.3e-11 72.4 55 61.8
Thecc.09G146600 Theobroma cacao HOM05D000494 ORTHO05D000556 1.3e-11 72.4 38 76.3
COL.COLO4_24025 Corchorus olitorius HOM05D000494 ORTHO05D000556 1.7e-11 72.0 38 78.9
Duzib168G1398 Durio zibethinus HOM05D000494 ORTHO05D000556 2.2e-11 71.6 38 73.7
Actinidia13274 Actinidia chinensis HOM05D000494 ORTHO05D000556 2.8e-11 71.2 45 64.4
Actinidia14633 Actinidia chinensis HOM05D000494 ORTHO05D000556 2.8e-11 71.2 55 60.0
CSS0021072 Camellia sinensis var. sinensis HOM05D000494 ORTHO05D018141 2.8e-11 71.2 54 61.1
Lsat_1_v5_gn_5_32440 Lactuca sativa HOM05D000494 ORTHO05D000556 2.8e-11 71.2 49 57.1
Gohir.D05G010500 Gossypium hirsutum HOM05D000494 ORTHO05D000556 4.8e-11 70.5 40 70.0
Gorai.009G010900 Gossypium raimondii HOM05D000494 ORTHO05D000556 4.8e-11 70.5 40 70.0
GSVIVG01035778001 Vitis vinifera HOM05D000494 ORTHO05D000556 6.3e-11 70.1 56 57.1
MD08G1140800 Malus domestica HOM05D000494 ORTHO05D000556 8.2e-11 69.7 55 60.0
Potri.018G033000 Populus trichocarpa HOM05D000494 ORTHO05D000556 1.1e-10 69.3 55 56.4
Nn8g39318 Nelumbo nucifera HOM05D000494 ORTHO05D000556 1.4e-10 68.9 56 57.1
CDE06G1103 Ceratophyllum demersum HOM05D000494 ORTHO05D000556 1.8e-10 68.6 41 70.7
Potri.006G248400 Populus trichocarpa HOM05D000494 ORTHO05D000556 1.8e-10 68.6 39 69.2
Aqoxy7G01924 Aquilegia oxysepala HOM05D000494 ORTHO05D000556 2.4e-10 68.2 34 82.4
DCAR_001032 Daucus carota HOM05D000494 ORTHO05D000556 2.4e-10 68.2 39 69.2
CSS0031483 Camellia sinensis var. sinensis HOM05D000494 ORTHO05D000556 3.1e-10 67.8 55 54.5
Glyma.06G071900 Glycine max HOM05D000494 ORTHO05D000556 3.1e-10 67.8 55 56.4
MD15G1117700 Malus domestica HOM05D000494 ORTHO05D000556 3.1e-10 67.8 55 58.2
Rhsim07G0148900 Rhododendron simsii HOM05D000494 ORTHO05D000556 3.1e-10 67.8 54 53.7
CDE04G2007 Ceratophyllum demersum HOM05D000494 ORTHO05D000556 4.1e-10 67.4 40 70.0
Gohir.A05G009800 Gossypium hirsutum HOM05D000494 ORTHO05D000556 4.1e-10 67.4 38 71.1
Cfa013202 Carpinus fangiana HOM05D000494 ORTHO05D000556 5.3e-10 67.0 55 63.6
Manes.03G018800 Manihot esculenta HOM05D000494 ORTHO05D000556 5.3e-10 67.0 54 59.3
TWI34G0349 Tripterygium wilfordii HOM05D000494 ORTHO05D000556 5.3e-10 67.0 52 55.8
Aa31sc251G60 Aethionema arabicum HOM05D000494 ORTHO05D000556 6.9e-10 66.6 55 54.5
Haze_21607 Corylus avellana HOM05D000494 ORTHO05D000556 6.9e-10 66.6 55 63.6
CAN.G199.32 Capsicum annuum HOM05D000494 ORTHO05D000556 9.1e-10 66.2 50 56.0
Atru.chr7.2346 Acer truncatum HOM05D000494 ORTHO05D018141 1.2e-09 65.9 54 55.6
MSTRG.25863 Avicennia marina HOM05D000494 ORTHO05D000556 1.2e-09 65.9 55 50.9
Ciclev10008648m.g Citrus clementina HOM05D000494 ORTHO05D000556 1.2e-09 65.9 52 53.8
ECA246G1806 Erigeron canadensis HOM05D000103 ORTHO05D000049 1.2e-09 65.9 50 56.0
HanXRQChr08g0236301 Helianthus annuus HOM05D000494 ORTHO05D000556 1.2e-09 65.9 41 61.0
SalBow4G2276 Salvia bowleyana HOM05D000494 ORTHO05D000556 1.2e-09 65.9 54 51.9
CARHR115680 Cardamine hirsuta HOM05D000494 ORTHO05D000556 1.5e-09 65.5 57 50.9
THA.LOC104818629 Tarenaya hassleriana HOM05D000494 ORTHO05D000556 1.5e-09 65.5 55 56.4
ATR0083G027 Amborella trichopoda HOM05D000494 ORTHO05D000556 2.0e-09 65.1 35 80.0
Phvul.009G096300 Phaseolus vulgaris HOM05D000494 ORTHO05D000556 2.0e-09 65.1 40 65.0
SGA_v2.0_scaffold448G51774 Striga asiatica HOM05D000494 ORTHO05D000556 3.4e-09 64.3 58 51.7
VMungo1309G2622 Vigna mungo HOM05D000494 ORTHO05D000556 3.4e-09 64.3 38 71.1
Migut.A00289 Erythranthe guttata HOM05D000494 ORTHO05D000556 4.5e-09 63.9 40 60.0
Glyma.04G069900 Glycine max HOM05D000494 ORTHO05D000556 5.9e-09 63.5 55 54.5
Carub.0004s0539 Capsella rubella HOM05D000494 ORTHO05D000556 1.0e-08 62.8 55 50.9
Cc11_g01410 Coffea canephora HOM05D000494 ORTHO05D000556 1.0e-08 62.8 51 51.0
Lalb_Chr08g0243871 Lupinus albus HOM05D000494 ORTHO05D000556 1.0e-08 62.8 53 50.9
Nitab4.5_0003128g0020 Nicotiana tabacum HOM05D000494 ORTHO05D000556 1.0e-08 62.8 56 53.6
PGR142G3638 Punica granatum HOM05D000494 ORTHO05D024157 1.0e-08 62.8 52 53.8
THA.LOC104803824 Tarenaya hassleriana HOM05D000494 ORTHO05D000556 1.0e-08 62.8 38 65.8
AL4G17090 Arabidopsis lyrata HOM05D000494 ORTHO05D000556 1.3e-08 62.4 54 53.7
MSTRG.11747 Avicennia marina HOM05D000494 ORTHO05D000556 1.7e-08 62.0 40 60.0
Zm00001eb385910 Zea mays HOM05D000494 ORTHO05D000556 1.7e-08 62.0 39 61.5
Nitab4.5_0004611g0010 Nicotiana tabacum HOM05D000494 ORTHO05D000556 2.2e-08 61.6 35 68.6
Lalb_Chr23g0268851 Lupinus albus HOM05D000494 ORTHO05D000556 2.9e-08 61.2 55 49.1
Eucgr.C02836 Eucalyptus grandis HOM05D000494 ORTHO05D000556 3.8e-08 60.8 51 52.9
Peaxi162Scf00075g02123 Petunia axillaris HOM05D000494 ORTHO05D000556 3.8e-08 60.8 35 65.7
Sabra18G0033800 Salix brachista HOM05D000494 ORTHO05D000556 5.0e-08 60.5 38 65.8
AT2G25620 Arabidopsis thaliana HOM05D000494 ORTHO05D000556 6.5e-08 60.1 37 64.9
BcaB08g35203 Brassica carinata HOM05D000494 ORTHO05D000556 6.5e-08 60.1 41 58.5
Solyc06g065610.3 Solanum lycopersicum HOM05D000494 ORTHO05D000556 6.5e-08 60.1 52 51.9
Sopen06g024070 Solanum pennellii HOM05D000494 ORTHO05D000556 6.5e-08 60.1 52 51.9
A09p55520 Brassica napus HOM05D000494 ORTHO05D000556 1.4e-07 58.9 37 59.5
BraA09t40954Z Brassica rapa HOM05D000494 ORTHO05D000556 1.4e-07 58.9 37 59.5
Thhalv10000194m.g Eutrema salsugineum HOM05D000494 ORTHO05D000556 1.4e-07 58.9 41 53.7
PGSC0003DMG400026085 Solanum tuberosum HOM05D000494 ORTHO05D000556 1.4e-07 58.9 52 51.9
Oeu035825.1 Olea europaea HOM05D000494 ORTHO05D023310 3.2e-07 57.8 37 62.2
HPP92_023334 Vanilla planifolia HOM05D000494 ORTHO05D000556 3.2e-07 57.8 41 58.5
Atru.chr7.1776 Acer truncatum HOM05D000494 ORTHO05D018141 4.2e-07 57.4 55 49.1
Psat5g027080 Pisum sativum HOM05D000494 ORTHO05D000556 4.2e-07 57.4 36 61.1
arahy.Tifrunner.gnm1.ann1.24PQDM Arachis hypogaea HOM05D000494 ORTHO05D000556 5.5e-07 57.0 55 49.1
BcaC07g40852 Brassica carinata HOM05D000494 ORTHO05D000556 5.5e-07 57.0 37 59.5
C08p38500 Brassica napus HOM05D000494 ORTHO05D000556 5.5e-07 57.0 37 59.5
Sp4g05180 Schrenkiella parvula HOM05D000494 ORTHO05D000556 5.5e-07 57.0 56 50.0
arahy.Tifrunner.gnm1.ann1.84MHXV Arachis hypogaea HOM05D000494 ORTHO05D000556 9.4e-07 56.2 55 49.1
Lj1g0002787 Lotus japonicus HOM05D000494 ORTHO05D000556 1.6e-06 55.5 34 64.7
Medtr3g107880 Medicago truncatula HOM05D000494 ORTHO05D000556 1.6e-06 55.5 37 64.9
BolC8t51422H Brassica oleracea HOM05D000494 ORTHO05D000556 2.1e-06 55.1 37 56.8
Ca_15709_v3 Cicer arietinum L. HOM05D000494 ORTHO05D000556 2.1e-06 55.1 38 57.9
unitig_748.g7369 Utricularia gibba HOM05D000494 ORTHO05D000556 4.7e-06 53.9 37 62.2
Zm00001eb192230 Zea mays HOM05D000494 ORTHO05D000556 7.9e-06 53.1 38 47.4


User provided reference genes

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