Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.12g062460 Amaranthus hybridus HOM05D004232 ORTHO05D004909 1.7e-207 725.7 355 100.0
AUR62005074 Chenopodium quinoa HOM05D004232 ORTHO05D004909 4.0e-63 246.1 479 36.7
Hund21619 Selenicereus undatus HOM05D004232 ORTHO05D004909 8.3e-61 238.4 520 32.5
vmacro21873 Vaccinium macrocarpon HOM05D004232 ORTHO05D004909 3.2e-60 236.5 476 34.2
EL10Ac1g00573 Beta vulgaris HOM05D004232 ORTHO05D004909 2.9e-58 229.9 526 34.0
AUR62000901 Chenopodium quinoa HOM05D004232 ORTHO05D004909 3.9e-58 229.6 542 33.2
Ah.06g190350 Amaranthus hybridus HOM05D004232 ORTHO05D001990 5.0e-58 229.2 509 35.2
Actinidia04264 Actinidia chinensis HOM05D004232 ORTHO05D004909 1.5e-57 227.6 488 34.0
Sc08g0005080 Simmondsia chinensis HOM05D004232 ORTHO05D004909 7.3e-57 225.3 483 33.1
PGSC0003DMG400023181 Solanum tuberosum HOM05D004232 ORTHO05D004909 9.5e-57 224.9 476 32.6
SGA_v2.0_scaffold387G50524 Striga asiatica HOM05D004232 ORTHO05D004909 2.8e-56 223.4 446 33.0
Lsat_1_v5_gn_8_77581 Lactuca sativa HOM05D004232 ORTHO05D004909 2.0e-54 217.2 474 31.4
Nitab4.5_0000059g0500 Nicotiana tabacum HOM05D004232 ORTHO05D004909 4.9e-53 212.6 492 32.3
Sopen02g003100 Solanum pennellii HOM05D004232 ORTHO05D004909 4.9e-53 212.6 477 32.7
Solyc02g014460.4 Solanum lycopersicum HOM05D004232 ORTHO05D004909 8.3e-53 211.8 484 33.1
CiPaw.15G171200 Carya illinoinensis HOM05D004232 ORTHO05D004909 1.1e-52 211.5 488 31.8
TPR.G15784 Trifolium pratense HOM05D004232 ORTHO05D004909 2.0e-51 207.2 478 31.6
Rhsim01G0048900 Rhododendron simsii HOM05D004232 ORTHO05D004909 2.7e-51 206.8 466 32.6
Medtr4g116900 Medicago truncatula HOM05D004232 ORTHO05D004909 1.0e-50 204.9 475 31.2
Nitab4.5_0000700g0080 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.0e-50 204.9 510 31.6
Ca_21603_v3 Cicer arietinum L. HOM05D004232 ORTHO05D004909 1.7e-50 204.1 473 31.3
arahy.Tifrunner.gnm1.ann1.TW5YT9 Arachis hypogaea HOM05D004232 ORTHO05D004909 6.6e-50 202.2 473 33.4
Lsat_1_v5_gn_8_59400 Lactuca sativa HOM05D004232 ORTHO05D004909 6.6e-50 202.2 471 31.2
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 2.5e-49 200.3 475 33.1
Psat4g032960 Pisum sativum HOM05D004232 ORTHO05D004909 4.3e-49 199.5 478 30.5
Manes.06G039700 Manihot esculenta HOM05D004232 ORTHO05D004909 7.3e-49 198.7 512 29.3
Glyma.17G103900 Glycine max HOM05D004232 ORTHO05D004909 2.8e-48 196.8 471 31.8
QL02p091766 Quercus lobata HOM05D004232 ORTHO05D004909 2.8e-48 196.8 486 30.5
Peaxi162Scf00113g00410 Petunia axillaris HOM05D004232 ORTHO05D004909 4.7e-48 196.1 491 30.1
Sabra18G0095700 Salix brachista HOM05D004232 ORTHO05D004909 1.4e-47 194.5 513 29.0
ECA236G3428 Erigeron canadensis HOM05D004232 ORTHO05D004909 2.3e-47 193.7 478 30.3
DCAR_019365 Daucus carota HOM05D004232 ORTHO05D004909 3.1e-47 193.4 487 32.0
MSTRG.26306 Avicennia marina HOM05D004232 ORTHO05D004909 5.2e-47 192.6 504 29.0
Cfa020866 Carpinus fangiana HOM05D004232 ORTHO05D004909 5.2e-47 192.6 486 30.7
Glyma.13G156200 Glycine max HOM05D004232 ORTHO05D004909 6.8e-47 192.2 471 31.4
Gohir.D06G096600 Gossypium hirsutum HOM05D004232 ORTHO05D004909 6.8e-47 192.2 524 28.4
Glyma.13G156300 Glycine max HOM05D004232 ORTHO05D004909 2.6e-46 190.3 467 31.0
HanXRQChr05g0141511 Helianthus annuus HOM05D004232 ORTHO05D004909 5.8e-46 189.1 484 31.0
Haze_19292 Corylus avellana HOM05D004232 ORTHO05D004909 9.8e-46 188.3 506 30.4
Migut.K00358 Erythranthe guttata HOM05D004232 ORTHO05D004909 1.7e-45 187.6 499 30.3
Potri.018G112500 Populus trichocarpa HOM05D004232 ORTHO05D004909 1.7e-45 187.6 513 27.9
Aqoxy7G03502 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 2.2e-45 187.2 471 32.3
Gorai.010G111300 Gossypium raimondii HOM05D004232 ORTHO05D004909 2.2e-45 187.2 525 28.2
Dinv42900 Davidia involucrata HOM05D004232 ORTHO05D004909 2.9e-45 186.8 471 29.1
Dinv43201 Davidia involucrata HOM05D004232 ORTHO05D004909 2.9e-45 186.8 471 29.1
Gohir.A06G096400 Gossypium hirsutum HOM05D004232 ORTHO05D004909 2.9e-45 186.8 524 27.9
Aqoxy7G03504 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 4.9e-45 186.0 475 29.9
GSVIVG01001050001 Vitis vinifera HOM05D004232 ORTHO05D004909 6.4e-45 185.7 469 30.9
FAN26G2384 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.9e-44 184.1 499 29.3
FvH4_1g01460 Fragaria vesca HOM05D004232 ORTHO05D004909 2.4e-44 183.7 501 30.1
TAR625G0697 Trochodendron aralioides HOM05D004232 ORTHO05D004909 2.4e-44 183.7 505 29.9
PSO063G1432 Papaver somniferum HOM05D004232 ORTHO05D004909 7.1e-44 182.2 489 32.3
Lj4g0017422 Lotus japonicus HOM05D004232 ORTHO05D004909 9.2e-44 181.8 487 30.8
Thecc.09G036600 Theobroma cacao HOM05D004232 ORTHO05D004909 1.2e-43 181.4 536 27.8
Duzib168G1849 Durio zibethinus HOM05D004232 ORTHO05D004909 1.6e-43 181.0 506 29.6
FAN19G1911 Fragaria x ananassa HOM05D004232 ORTHO05D004909 3.5e-43 179.9 507 29.2
HPP92_023808 Vanilla planifolia HOM05D004232 ORTHO05D004909 7.8e-43 178.7 483 30.8
MD02G1011700 Malus domestica HOM05D004232 ORTHO05D004909 1.7e-42 177.6 518 27.4
Cc06_g23430 Coffea canephora HOM05D004232 ORTHO05D004909 2.3e-42 177.2 496 29.6
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 2.3e-42 177.2 468 29.5
RcHm_v2.0_Chr2g0086391 Rosa chinensis HOM05D004232 ORTHO05D004909 3.9e-42 176.4 502 29.7
VMungo1215G2079 Vigna mungo HOM05D004232 ORTHO05D004909 5.1e-42 176.0 466 28.8
FAN28G1469 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.1e-41 174.9 502 28.9
Lalb_Chr07g0179621 Lupinus albus HOM05D004232 ORTHO05D004909 2.5e-41 173.7 476 30.0
Rhsim01G0048600 Rhododendron simsii HOM05D004232 ORTHO05D004909 2.5e-41 173.7 230 42.6
ClCG06G012120 Citrullus lanatus HOM05D004232 ORTHO05D004909 5.6e-41 172.6 524 29.2
Cc06_g23400 Coffea canephora HOM05D004232 ORTHO05D004909 9.5e-41 171.8 496 29.6
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 1.2e-40 171.4 520 26.9
Sed0012168 Sechium edule HOM05D004232 ORTHO05D004909 1.2e-40 171.4 540 28.7
TWI34G2022 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 4.7e-40 169.5 551 27.0
THA.LOC104808932 Tarenaya hassleriana HOM05D004232 ORTHO05D004909 6.2e-40 169.1 522 27.0
TWI63G0539 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 1.1e-39 168.3 466 29.4
Dinv41413 Davidia involucrata HOM05D004232 ORTHO05D004909 1.2e-38 164.9 331 32.0
Lj9A711T51 Lonicera japonica HOM05D004232 ORTHO05D004909 2.0e-38 164.1 384 29.7
Rhsim01G0048700 Rhododendron simsii HOM05D004232 ORTHO05D004909 2.6e-38 163.7 380 30.3
CsaV3_1G028610 Cucumis sativus L. HOM05D004232 ORTHO05D004909 3.4e-38 163.3 546 28.0
Medtr4g116910 Medicago truncatula HOM05D004232 ORTHO05D004909 1.3e-37 161.4 475 28.8
Ciclev10007957m.g Citrus clementina HOM05D004232 ORTHO05D004909 1.7e-37 161.0 536 25.9
MELO3C010252.2 Cucumis melo HOM05D004232 ORTHO05D004909 3.7e-37 159.8 547 27.4
Atru.chr7.187 Acer truncatum HOM05D004232 ORTHO05D004909 8.3e-37 158.7 551 25.6
Gorai.010G111100 Gossypium raimondii HOM05D004232 ORTHO05D004909 8.3e-37 158.7 474 28.5
FAN23G0432 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.1e-36 158.3 426 28.6
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 9.2e-36 155.2 250 37.2
Prupe.7G257900 Prunus persica HOM05D004232 ORTHO05D004909 1.2e-35 154.8 473 29.4
Rhsim01G0048800 Rhododendron simsii HOM05D004232 ORTHO05D004909 1.2e-35 154.8 372 28.8
TPR.G15793 Trifolium pratense HOM05D004232 ORTHO05D004909 1.2e-35 154.8 484 27.7
Thhalv10018400m.g Eutrema salsugineum HOM05D004232 ORTHO05D004909 1.6e-35 154.5 524 24.8
CARHR073790 Cardamine hirsuta HOM05D004232 ORTHO05D004909 2.1e-35 154.1 521 25.7
Actinidia04270 Actinidia chinensis HOM05D004232 ORTHO05D004909 2.3e-34 150.6 372 30.1
AT1G80710 Arabidopsis thaliana HOM05D004232 ORTHO05D004909 3.9e-34 149.8 519 24.9
PGR142G1232 Punica granatum HOM05D004232 ORTHO05D004909 3.9e-34 149.8 615 25.0
CSS0000460 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 8.6e-34 148.7 453 25.4
Nn8g39758 Nelumbo nucifera HOM05D004232 ORTHO05D004909 3.3e-33 146.7 623 24.4
BolC9t55076H Brassica oleracea HOM05D004232 ORTHO05D004909 7.3e-33 145.6 478 26.4
C09p21710 Brassica napus HOM05D004232 ORTHO05D004909 9.6e-33 145.2 478 26.4
Sp5g35040 Schrenkiella parvula HOM05D004232 ORTHO05D004909 4.7e-32 142.9 527 25.2
BcaC04g22248 Brassica carinata HOM05D004232 ORTHO05D004909 8.1e-32 142.1 478 26.2
ECA236G0371 Erigeron canadensis HOM05D004232 ORTHO05D004909 1.8e-31 141.0 472 26.7
BcaC08g47551 Brassica carinata HOM05D004232 ORTHO05D004909 3.1e-31 140.2 541 24.8
BolC6t40394H Brassica oleracea HOM05D004232 ORTHO05D004909 3.1e-31 140.2 541 24.8
Gohir.D06G096401 Gossypium hirsutum HOM05D004232 ORTHO05D004909 3.1e-31 140.2 458 27.3
Nn2g12267 Nelumbo nucifera HOM05D004232 ORTHO05D004909 3.1e-31 140.2 640 25.3
CARHR073800 Cardamine hirsuta HOM05D004232 ORTHO05D004909 4.0e-31 139.8 477 25.4
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 4.0e-31 139.8 429 27.7
Eucgr.C00403 Eucalyptus grandis HOM05D004232 ORTHO05D004909 8.9e-31 138.7 421 26.1
AL2G40720 Arabidopsis lyrata HOM05D004232 ORTHO05D004909 2.0e-30 137.5 530 24.7
C06p53760 Brassica napus HOM05D004232 ORTHO05D004909 2.0e-30 137.5 550 25.3
Gohir.A06G096200 Gossypium hirsutum HOM05D004232 ORTHO05D004909 3.4e-30 136.7 505 25.9
BcaC08g47552 Brassica carinata HOM05D004232 ORTHO05D004909 7.6e-30 135.6 529 25.3
A09p17420 Brassica napus HOM05D004232 ORTHO05D004909 1.3e-29 134.8 445 27.6
SEGI_24126 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 1.3e-29 134.8 475 26.3
A07p44980 Brassica napus HOM05D004232 ORTHO05D004909 2.2e-29 134.0 555 24.1
BraA07t32003Z Brassica rapa HOM05D004232 ORTHO05D004909 6.4e-29 132.5 554 23.8
Aa31LG1G2250 Aethionema arabicum HOM05D004232 ORTHO05D004909 1.4e-28 131.3 501 24.6
CSS0018310 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 4.2e-28 129.8 273 34.4
CANSAT11G0555 Cannabis sativa HOM05D004232 ORTHO05D004909 5.4e-28 129.4 582 24.1
ATR0629G133 Amborella trichopoda HOM05D004232 ORTHO05D004909 1.2e-27 128.3 241 32.8
Carub.0002s2684 Capsella rubella HOM05D004232 ORTHO05D004909 2.3e-26 124.0 521 24.2
ATR0629G116 Amborella trichopoda HOM05D004232 ORTHO05D004909 1.1e-25 121.7 242 32.2
Oeu051700.1 Olea europaea HOM05D004232 ORTHO05D004909 3.6e-24 116.7 506 25.7
Migut.G00058 Erythranthe guttata HOM05D004232 ORTHO05D004909 6.2e-24 115.9 233 33.5
Nitab4.5_0000660g0030 Nicotiana tabacum HOM05D004232 ORTHO05D004909 4.0e-23 113.2 336 26.2
CSS0031603 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 5.8e-22 109.4 274 31.8
Rhsim01G0048400 Rhododendron simsii HOM05D004232 ORTHO05D004909 1.3e-21 108.2 296 29.7
CSS0034823 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 2.2e-21 107.5 186 31.7
BolC6t40395H Brassica oleracea HOM05D004232 ORTHO05D004909 1.9e-20 104.4 285 28.8
QL05p007856 Quercus lobata HOM05D004232 ORTHO05D004909 7.1e-20 102.4 239 31.4
COL.COLO4_18749 Corchorus olitorius HOM05D004232 ORTHO05D004909 3.5e-19 100.1 276 29.0
SEGI_07783 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 6.0e-19 99.4 239 29.3
Ah.06g190310 Amaranthus hybridus HOM05D004232 ORTHO05D004909 1.0e-18 98.6 72 58.3
Os08g0285200 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 1.7e-18 97.8 468 24.1
Os08g0282500 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 5.6e-17 92.8 466 23.6
ATR0629G098 Amborella trichopoda HOM05D004232 ORTHO05D004909 2.4e-15 87.4 77 50.6
HanXRQChr12g0386031 Helianthus annuus HOM05D004232 ORTHO05D004909 3.1e-15 87.0 109 39.4
BcaB07g31225 Brassica carinata HOM05D004232 ORTHO05D004909 2.0e-14 84.3 355 25.9
Zm00001eb028210 Zea mays HOM05D004232 ORTHO05D004909 3.4e-14 83.6 232 29.3
Cpa.g.sc46.107 Carica papaya HOM05D004232 ORTHO05D004909 4.5e-14 83.2 132 39.4
Nitab4.5_0010824g0020 Nicotiana tabacum HOM05D004232 ORTHO05D004909 9.9e-14 82.0 302 27.2
COL.COLO4_18748 Corchorus olitorius HOM05D004232 ORTHO05D004909 1.3e-13 81.6 82 41.5
Peaxi162Scf00155g00514 Petunia axillaris HOM05D004232 ORTHO05D004909 2.2e-13 80.9 187 32.1
ECA234G1449 Erigeron canadensis HOM05D004232 ORTHO05D004909 3.8e-13 80.1 86 44.2
BraA09t37368Z Brassica rapa HOM05D004232 ORTHO05D004909 1.2e-11 75.1 113 38.1
C06p53770 Brassica napus HOM05D004232 ORTHO05D004909 1.6e-11 74.7 157 35.0
Nitab4.5_0011109g0010 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.6e-11 74.7 86 37.2
SMO364G0327 Selaginella moellendorffii HOM05D004232 ORTHO05D004909 1.6e-11 74.7 312 20.5
QL05p007864 Quercus lobata HOM05D004232 ORTHO05D004909 2.1e-11 74.3 71 50.7
ATR0629G041 Amborella trichopoda HOM05D004232 ORTHO05D004909 2.7e-11 73.9 80 45.0
Cpa.g.sc46.108 Carica papaya HOM05D004232 ORTHO05D004909 1.8e-10 71.2 445 24.0
Nitab4.5_0008408g0040 Nicotiana tabacum HOM05D004232 ORTHO05D004909 3.9e-10 70.1 85 37.6
TPR.G29050 Trifolium pratense HOM05D004232 ORTHO05D004909 1.3e-08 65.1 90 37.8
Glyma.17G103767 Glycine max HOM05D004232 ORTHO05D004909 3.1e-07 60.5 84 40.5
C02p46280 Brassica napus HOM05D000783 ORTHO05D000705 4.0e-07 60.1 95 29.5
VMungo1215G1753 Vigna mungo HOM05D004232 ORTHO05D004909 4.0e-07 60.1 321 24.0
QL05p008018 Quercus lobata HOM05D000129 ORTHO05D004909 1.0e-05 55.5 54 44.4


User provided reference genes

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