Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.12g060790 Amaranthus hybridus HOM05D003524 ORTHO05D003988 1.5e-62 242.7 120 100.0
EL10Ac2g02500 Beta vulgaris HOM05D003524 ORTHO05D003988 6.7e-47 190.7 132 75.8
AUR62024806 Chenopodium quinoa HOM05D003524 ORTHO05D003988 3.8e-42 174.9 118 75.4
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 4.1e-28 128.3 91 71.4
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 4.5e-27 124.8 90 67.8
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 5.9e-27 124.4 103 62.1
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 5.9e-27 124.4 102 61.8
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 7.7e-27 124.0 88 69.3
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 7.7e-27 124.0 100 66.0
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 1.0e-26 123.6 100 65.0
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 1.7e-26 122.9 99 64.6
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 2.9e-26 122.1 102 60.8
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 3.8e-26 121.7 91 67.0
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 3.8e-26 121.7 91 67.0
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 3.8e-26 121.7 91 67.0
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 3.8e-26 121.7 91 67.0
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 3.8e-26 121.7 98 62.2
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 3.8e-26 121.7 91 67.0
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 5.0e-26 121.3 101 62.4
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 1.5e-25 119.8 102 59.8
Sp7g29640 Schrenkiella parvula HOM05D003524 ORTHO05D003988 1.5e-25 119.8 91 65.9
CiPaw.07G230500 Carya illinoinensis HOM05D003524 ORTHO05D003988 1.9e-25 119.4 101 63.4
Thhalv10026655m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 2.5e-25 119.0 91 65.9
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 3.2e-25 118.6 91 63.7
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 4.2e-25 118.2 91 65.9
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 4.2e-25 118.2 105 57.1
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 5.5e-25 117.9 93 63.4
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 5.5e-25 117.9 90 66.7
Ca_13066_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 7.2e-25 117.5 95 62.1
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 7.2e-25 117.5 103 59.2
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 9.4e-25 117.1 91 64.8
BcaC09g51975 Brassica carinata HOM05D003524 ORTHO05D003988 1.2e-24 116.7 91 64.8
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 1.2e-24 116.7 99 60.6
THA.LOC104803862 Tarenaya hassleriana HOM05D003524 ORTHO05D003988 1.2e-24 116.7 85 65.9
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 1.6e-24 116.3 91 62.6
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 2.1e-24 115.9 90 63.3
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 2.7e-24 115.5 91 64.8
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 2.7e-24 115.5 91 64.8
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 2.7e-24 115.5 91 64.8
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 2.7e-24 115.5 91 64.8
BraA08t33803Z Brassica rapa HOM05D003524 ORTHO05D003988 2.7e-24 115.5 91 64.8
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 2.7e-24 115.5 91 63.7
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 3.6e-24 115.2 91 62.6
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 3.6e-24 115.2 93 59.1
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 6.1e-24 114.4 95 62.1
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 8.0e-24 114.0 88 64.8
RcHm_v2.0_Chr6g0299391 Rosa chinensis HOM05D003524 ORTHO05D003988 8.0e-24 114.0 90 63.3
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 2.3e-23 112.5 96 59.4
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 3.0e-23 112.1 96 57.3
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 4.0e-23 111.7 86 61.6
BcaB03g12722 Brassica carinata HOM05D003524 ORTHO05D003988 5.2e-23 111.3 89 64.0
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 8.8e-23 110.5 86 66.3
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 8.8e-23 110.5 102 57.8
Os09g0127700 Oryza sativa ssp. japonica HOM05D003524 ORTHO05D003988 8.8e-23 110.5 90 56.7
Solyc08g006800.3 Solanum lycopersicum HOM05D003524 ORTHO05D003988 8.8e-23 110.5 86 62.8
Gohir.D05G062000 Gossypium hirsutum HOM05D003524 ORTHO05D003988 1.5e-22 109.8 99 58.6
Gorai.009G063100 Gossypium raimondii HOM05D003524 ORTHO05D003988 1.5e-22 109.8 99 58.6
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 1.5e-22 109.8 87 66.7
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 2.0e-22 109.4 89 61.8
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 2.0e-22 109.4 89 61.8
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 2.0e-22 109.4 89 60.7
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 2.6e-22 109.0 102 55.9
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.6e-22 109.0 96 58.3
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 4.4e-22 108.2 98 58.2
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 4.4e-22 108.2 88 60.2
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 5.7e-22 107.8 88 59.1
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 7.5e-22 107.5 94 60.6
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 1.3e-21 106.7 102 55.9
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 1.7e-21 106.3 91 60.4
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 2.2e-21 105.9 100 56.0
Gohir.A05G059800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 2.2e-21 105.9 98 57.1
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 2.8e-21 105.5 102 53.9
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 2.8e-21 105.5 102 55.9
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 2.8e-21 105.5 87 63.2
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 2.8e-21 105.5 90 54.4
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 3.7e-21 105.1 91 57.1
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 3.7e-21 105.1 91 57.1
PGSC0003DMG400026298 Solanum tuberosum HOM05D003524 ORTHO05D003988 6.3e-21 104.4 79 65.8
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 8.3e-21 104.0 102 52.9
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.4e-20 103.2 96 56.2
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.8e-20 102.8 81 61.7
AUR62032414 Chenopodium quinoa HOM05D003524 ORTHO05D003988 3.1e-20 102.1 122 50.8
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 5.3e-20 101.3 89 60.7
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 5.3e-20 101.3 89 60.7
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 5.3e-20 101.3 102 52.0
Zm00001eb095580 Zea mays HOM05D003524 ORTHO05D003988 2.0e-19 99.4 92 55.4
Sopen08g002750 Solanum pennellii HOM05D003524 ORTHO05D003988 3.5e-19 98.6 79 60.8
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 7.7e-19 97.4 79 63.3
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 2.9e-18 95.5 100 53.0
Manes.16G130000 Manihot esculenta HOM05D003524 ORTHO05D003988 5.0e-18 94.7 80 60.0
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 1.9e-17 92.8 75 61.3
Duzib168G0976 Durio zibethinus HOM05D003524 ORTHO05D003988 2.1e-16 89.4 99 52.5
Glyma.14G101900 Glycine max HOM05D003524 ORTHO05D003988 1.0e-15 87.0 75 58.7
unitig_32.g11664 Utricularia gibba HOM05D006934 ORTHO05D008743 1.0e-15 87.0 87 51.7
FAN15G0945 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.3e-15 85.9 79 55.7
Sed0019715 Sechium edule HOM05D003524 ORTHO05D003988 2.3e-15 85.9 100 52.0
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 6.8e-15 84.3 80 56.2
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 2.0e-14 82.8 80 55.0
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 3.4e-14 82.0 104 44.2
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 4.4e-14 81.6 73 58.9
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 4.8e-13 78.2 80 52.5
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 6.3e-13 77.8 73 54.8
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 8.3e-13 77.4 82 53.7
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 8.3e-13 77.4 82 53.7
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 3.1e-12 75.5 62 61.3
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 3.1e-12 75.5 89 49.4
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 7.0e-12 74.3 77 55.8
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 7.0e-12 74.3 77 55.8
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 1.2e-11 73.6 76 51.3
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 2.0e-11 72.8 112 36.6
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 3.5e-11 72.0 61 57.4
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 5.9e-11 71.2 68 52.9
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 2.3e-10 69.3 72 55.6
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 5.0e-10 68.2 100 45.0
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 8.6e-10 67.4 79 49.4
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 1.1e-09 67.0 57 56.1
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.5e-09 66.6 80 43.8
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.5e-09 66.6 80 43.8
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.5e-09 66.6 80 43.8
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 1.9e-09 66.2 108 38.0
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 3.3e-09 65.5 84 47.6
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 3.3e-09 65.5 71 47.9
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 5.5e-09 64.7 65 52.3
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 9.5e-09 63.9 88 42.0
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 1.2e-08 63.5 65 50.8
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 1.6e-08 63.2 80 42.5
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 2.1e-08 62.8 71 47.9
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 6.1e-08 61.2 90 37.8
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 6.1e-08 61.2 57 54.4
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 8.0e-08 60.8 71 46.5
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 8.0e-08 60.8 71 46.5
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 8.0e-08 60.8 72 44.4
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 1.0e-07 60.5 97 36.1
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.0e-07 60.5 49 55.1
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.0e-07 60.5 49 55.1
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 1.0e-07 60.5 57 49.1
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.4e-07 60.1 59 49.2
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 1.8e-07 59.7 55 52.7
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 2.3e-07 59.3 57 54.4
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 2.3e-07 59.3 57 49.1
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 3.0e-07 58.9 71 43.7
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 5.2e-07 58.2 76 43.4
Nitab4.5_0006523g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 6.8e-07 57.8 70 44.3
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 6.8e-07 57.8 58 51.7
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 1.5e-06 56.6 53 56.6
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 1.5e-06 56.6 70 42.9
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 2.0e-06 56.2 57 50.9
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 2.0e-06 56.2 57 49.1
Prupe.1G394100 Prunus persica HOM05D003524 ORTHO05D003988 2.0e-06 56.2 89 40.4
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 2.6e-06 55.8 66 48.5
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 4.4e-06 55.1 57 49.1
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 4.4e-06 55.1 57 49.1
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 7.5e-06 54.3 48 56.2
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 9.8e-06 53.9 57 50.9


User provided reference genes

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