Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.12g060430 Amaranthus hybridus HOM05D005182 ORTHO05D006631 4.5e-132 474.6 233 100.0
EL10Ac2g02464 Beta vulgaris HOM05D005182 ORTHO05D006631 1.6e-65 253.4 203 65.5
AUR62024784 Chenopodium quinoa HOM05D005182 ORTHO05D006631 2.9e-62 242.7 199 62.8
AUR62032437 Chenopodium quinoa HOM05D005182 ORTHO05D006631 8.4e-62 241.1 199 62.8
DCAR_011246 Daucus carota HOM05D005182 ORTHO05D006631 1.3e-41 174.1 167 52.1
CiPaw.03G042000 Carya illinoinensis HOM05D005182 ORTHO05D006631 8.2e-41 171.4 168 52.4
Cfa007391 Carpinus fangiana HOM05D005182 ORTHO05D006631 2.4e-40 169.9 173 52.0
ClCG00G002150 Citrullus lanatus HOM05D005182 ORTHO05D006631 5.3e-40 168.7 151 56.3
ClCG09G019170 Citrullus lanatus HOM05D005182 ORTHO05D006631 5.3e-40 168.7 151 56.3
Migut.H00088 Erythranthe guttata HOM05D005182 ORTHO05D006631 9.0e-40 167.9 176 54.5
Manes.17G115200 Manihot esculenta HOM05D005182 ORTHO05D006631 9.0e-40 167.9 164 51.8
TAR629G2348 Trochodendron aralioides HOM05D005182 ORTHO05D006631 1.2e-39 167.5 170 50.0
Gohir.A07G222400 Gossypium hirsutum HOM05D005182 ORTHO05D006631 2.6e-39 166.4 183 49.7
Haze_14718 Corylus avellana HOM05D005182 ORTHO05D006631 3.4e-39 166.0 173 50.3
Potri.001G178800 Populus trichocarpa HOM05D005182 ORTHO05D006631 3.4e-39 166.0 144 58.3
COL.COLO4_29086 Corchorus olitorius HOM05D005182 ORTHO05D006631 5.9e-39 165.2 199 45.7
Dinv35097 Davidia involucrata HOM05D005182 ORTHO05D006631 5.9e-39 165.2 173 50.3
arahy.Tifrunner.gnm1.ann1.1JMX4I Arachis hypogaea HOM05D005182 ORTHO05D006631 7.6e-39 164.9 155 55.5
CANSAT64G2419 Cannabis sativa HOM05D005182 ORTHO05D006631 7.6e-39 164.9 168 50.6
vmacro04855 Vaccinium macrocarpon HOM05D005182 ORTHO05D006631 7.6e-39 164.9 183 48.1
Sed0025592 Sechium edule HOM05D005182 ORTHO05D006631 1.0e-38 164.5 129 62.0
Rhsim09G0149800 Rhododendron simsii HOM05D005182 ORTHO05D006631 1.3e-38 164.1 226 41.6
Sabra01G0148000 Salix brachista HOM05D005182 ORTHO05D006631 1.3e-38 164.1 223 45.3
TPR.G14069 Trifolium pratense HOM05D005182 ORTHO05D006631 1.3e-38 164.1 171 53.2
VMungo0464G0237 Vigna mungo HOM05D005182 ORTHO05D006631 1.3e-38 164.1 170 51.2
SGA_v2.0_scaffold481G52321 Striga asiatica HOM05D005182 ORTHO05D006631 1.7e-38 163.7 171 51.5
CiPaw.02G035100 Carya illinoinensis HOM05D005182 ORTHO05D006631 2.2e-38 163.3 182 48.4
CsaV3_5G027220 Cucumis sativus L. HOM05D005182 ORTHO05D006631 2.2e-38 163.3 167 52.7
MBI16_g14596_MAGBIO Magnolia biondii HOM05D005182 ORTHO05D006631 2.2e-38 163.3 195 47.7
Nitab4.5_0005432g0010 Nicotiana tabacum HOM05D005182 ORTHO05D006631 2.2e-38 163.3 186 45.7
Thecc.04G015200 Theobroma cacao HOM05D005182 ORTHO05D006631 2.2e-38 163.3 173 50.9
Eucgr.J02232 Eucalyptus grandis HOM05D005182 ORTHO05D006631 2.9e-38 162.9 208 45.2
Cc07_g01870 Coffea canephora HOM05D005182 ORTHO05D006631 3.8e-38 162.5 173 49.7
Gohir.D07G229100 Gossypium hirsutum HOM05D005182 ORTHO05D006631 3.8e-38 162.5 183 49.2
Gorai.001G264200 Gossypium raimondii HOM05D005182 ORTHO05D006631 3.8e-38 162.5 183 49.2
Phvul.004G010800 Phaseolus vulgaris HOM05D005182 ORTHO05D006631 3.8e-38 162.5 170 50.0
PGSC0003DMG400000477 Solanum tuberosum HOM05D005182 ORTHO05D006631 3.8e-38 162.5 153 52.9
Glyma.05G004900 Glycine max HOM05D005182 ORTHO05D006631 5.0e-38 162.2 170 51.2
Psat1g190920 Pisum sativum HOM05D005182 ORTHO05D006631 5.0e-38 162.2 173 52.6
Atru.chr6.2358 Acer truncatum HOM05D005182 ORTHO05D006631 8.5e-38 161.4 146 56.8
Actinidia06755 Actinidia chinensis HOM05D005182 ORTHO05D006631 8.5e-38 161.4 201 46.8
Aqoxy3G02839 Aquilegia oxysepala HOM05D005182 ORTHO05D006631 8.5e-38 161.4 144 56.9
SalBow1G7073 Salvia bowleyana HOM05D005182 ORTHO05D006631 1.1e-37 161.0 178 51.1
Sed0010591 Sechium edule HOM05D005182 ORTHO05D006631 1.4e-37 160.6 172 50.0
Sopen02g031300 Solanum pennellii HOM05D005182 ORTHO05D006631 2.5e-37 159.8 192 45.3
Prupe.3G289500 Prunus persica HOM05D005182 ORTHO05D006631 3.2e-37 159.5 160 51.2
Nitab4.5_0002682g0020 Nicotiana tabacum HOM05D005182 ORTHO05D006631 4.2e-37 159.1 186 44.6
Solyc02g086560.3 Solanum lycopersicum HOM05D005182 ORTHO05D006631 5.5e-37 158.7 192 45.3
CAN.G1799.12 Capsicum annuum HOM05D005182 ORTHO05D006631 7.2e-37 158.3 153 51.0
Medtr6g005390 Medicago truncatula HOM05D005182 ORTHO05D006631 7.2e-37 158.3 164 51.8
PGR142G3360 Punica granatum HOM05D005182 ORTHO05D006631 7.2e-37 158.3 143 54.5
CDE06G0683 Ceratophyllum demersum HOM05D005182 ORTHO05D006631 9.3e-37 157.9 160 50.6
PGR024G0002 Punica granatum HOM05D005182 ORTHO05D006631 9.3e-37 157.9 144 54.2
QL02p075210 Quercus lobata HOM05D005182 ORTHO05D006631 9.3e-37 157.9 144 54.9
MD17G1030300 Malus domestica HOM05D005182 ORTHO05D006631 1.2e-36 157.5 173 49.1
EL10Ac6g14578 Beta vulgaris HOM05D002842 ORTHO05D003177 2.1e-36 156.8 103 75.7
MELO3C021568.2 Cucumis melo HOM05D005182 ORTHO05D006631 2.1e-36 156.8 156 53.2
MD09G1028700 Malus domestica HOM05D005182 ORTHO05D006631 2.1e-36 156.8 144 55.6
RcHm_v2.0_Chr2g0173081 Rosa chinensis HOM05D005182 ORTHO05D006631 2.1e-36 156.8 144 55.6
THA.LOC104801894 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 2.1e-36 156.8 202 44.6
Ciclev10016757m.g Citrus clementina HOM05D005182 ORTHO05D006631 2.7e-36 156.4 176 48.9
Ca_04172_v3 Cicer arietinum L. HOM05D005182 ORTHO05D006631 3.6e-36 156.0 158 53.8
Lj2g0004707 Lotus japonicus HOM05D005182 ORTHO05D006631 3.6e-36 156.0 168 50.0
TWI12G0687 Tripterygium wilfordii HOM05D005182 ORTHO05D006631 3.6e-36 156.0 179 46.9
EL10Ac5g10908 Beta vulgaris HOM05D005182 ORTHO05D006631 6.1e-36 155.2 103 74.8
ECA246G2600 Erigeron canadensis HOM05D005182 ORTHO05D006631 6.1e-36 155.2 144 54.9
Peaxi162Scf00304g01217 Petunia axillaris HOM05D005182 ORTHO05D006631 6.1e-36 155.2 145 53.8
Nn3g16771 Nelumbo nucifera HOM05D005182 ORTHO05D006631 7.9e-36 154.8 144 53.5
Peaxi162Scf00129g01422 Petunia axillaris HOM05D005182 ORTHO05D006631 1.0e-35 154.5 145 53.1
EL10Ac6g13785 Beta vulgaris HOM05D005182 ORTHO05D006631 1.3e-35 154.1 103 74.8
CARHR040200 Cardamine hirsuta HOM05D005182 ORTHO05D006631 1.3e-35 154.1 177 48.0
Rhsim02G0095200 Rhododendron simsii HOM05D005182 ORTHO05D006631 2.3e-35 153.3 201 42.3
THA.LOC104807109 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 2.3e-35 153.3 202 43.6
Carub.0001s3930 Capsella rubella HOM05D005182 ORTHO05D006631 3.9e-35 152.5 197 45.2
Cpa.g.c28071.2 Carica papaya HOM05D005182 ORTHO05D006631 8.7e-35 151.4 196 43.9
Cfa007386 Carpinus fangiana HOM05D005182 ORTHO05D006631 8.7e-35 151.4 157 51.0
HanXRQChr17g0548351 Helianthus annuus HOM05D005182 ORTHO05D006631 8.7e-35 151.4 140 55.7
AT1G50170 Arabidopsis thaliana HOM05D005182 ORTHO05D006631 1.9e-34 150.2 195 45.6
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 2.5e-34 149.8 174 47.1
Thhalv10011756m.g Eutrema salsugineum HOM05D005182 ORTHO05D006631 3.3e-34 149.4 153 52.3
AL1G57790 Arabidopsis lyrata HOM05D005182 ORTHO05D006631 4.3e-34 149.1 144 53.5
Aa31LG10G4000 Aethionema arabicum HOM05D005182 ORTHO05D006631 5.7e-34 148.7 144 52.8
ATR0661G518 Amborella trichopoda HOM05D005182 ORTHO05D006631 1.3e-33 147.5 139 54.7
A08p03300 Brassica napus HOM05D005182 ORTHO05D006631 1.3e-33 147.5 146 51.4
Sp1g37040 Schrenkiella parvula HOM05D005182 ORTHO05D006631 1.3e-33 147.5 144 52.1
FAN21G0797 Fragaria x ananassa HOM05D005182 ORTHO05D006631 4.8e-33 145.6 144 52.1
Medtr6g005410 Medicago truncatula HOM05D005182 ORTHO05D006631 4.8e-33 145.6 170 45.9
C03p89510 Brassica napus HOM05D005182 ORTHO05D006631 8.2e-33 144.8 146 51.4
BolC3t21265H Brassica oleracea HOM05D005182 ORTHO05D006631 8.2e-33 144.8 146 51.4
Zm00001eb072570 Zea mays HOM05D005182 ORTHO05D006631 8.2e-33 144.8 154 49.4
FvH4_3g28470 Fragaria vesca HOM05D005182 ORTHO05D006631 1.1e-32 144.4 144 52.8
FAN11G2673 Fragaria x ananassa HOM05D005182 ORTHO05D006631 1.1e-32 144.4 144 52.8
BraA08t32363Z Brassica rapa HOM05D005182 ORTHO05D006631 1.4e-32 144.1 146 50.7
Sc19g0005880 Simmondsia chinensis HOM05D005182 ORTHO05D006631 2.4e-32 143.3 154 51.9
Ah.15g100150 Amaranthus hybridus HOM05D008863 ORTHO05D006631 2.0e-31 140.2 71 95.8
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 7.7e-31 138.3 138 52.2
SMO356G0462 Selaginella moellendorffii HOM05D005182 ORTHO05D006631 5.5e-29 132.1 142 46.5
arahy.Tifrunner.gnm1.ann1.C5A6Z1 Arachis hypogaea HOM05D005182 ORTHO05D006631 1.2e-28 131.0 79 70.9
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 2.6e-26 123.2 145 44.8
BcaC01g01215 Brassica carinata HOM05D005182 ORTHO05D006631 4.4e-26 122.5 121 52.1
Psat1g058360 Pisum sativum HOM05D005182 ORTHO05D006631 1.7e-25 120.6 151 41.1
Hund03875 Selenicereus undatus HOM05D005182 ORTHO05D006631 2.2e-25 120.2 152 48.7
Psat1g058400 Pisum sativum HOM05D005182 ORTHO05D006631 2.8e-25 119.8 145 43.4
GSVIVG01032428001 Vitis vinifera HOM05D005182 ORTHO05D006631 4.8e-25 119.0 123 50.4
Oeu057055.1 Olea europaea HOM05D005182 ORTHO05D006631 6.3e-25 118.6 123 49.6
arahy.Tifrunner.gnm1.ann1.NIKC7C Arachis hypogaea HOM05D005182 ORTHO05D006631 8.2e-25 118.2 149 48.3
RcHm_v2.0_Chr1g0351301 Rosa chinensis HOM05D005182 ORTHO05D006631 1.4e-24 117.5 132 47.7
Hund04415 Selenicereus undatus HOM05D005182 ORTHO05D006631 4.1e-24 115.9 67 77.6
CBR_g4824 Chara braunii HOM05D005182 ORTHO05D006631 5.3e-24 115.5 141 43.3
Dinv33456 Davidia involucrata HOM05D005182 ORTHO05D006631 9.1e-24 114.8 149 44.3
unitig_746.g26550 Utricularia gibba HOM05D005182 ORTHO05D006631 1.2e-23 114.4 123 46.3
Hma1.2p1_1291F.1_g273570 Hydrangea macrophylla HOM05D005182 ORTHO05D006631 1.5e-23 114.0 123 47.2
MSTRG.3153 Avicennia marina HOM05D005182 ORTHO05D006631 5.9e-23 112.1 112 54.5
SHI25748 Sapria himalayana HOM05D005182 ORTHO05D006631 1.3e-22 110.9 147 42.9
CSS0002021 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 6.1e-20 102.1 147 41.5
FvH4_6g51400 Fragaria vesca HOM05D005182 ORTHO05D006631 8.0e-20 101.7 122 44.3
FAN14G1378 Fragaria x ananassa HOM05D005182 ORTHO05D006631 8.0e-20 101.7 122 44.3
CiPaw.02G035200 Carya illinoinensis HOM05D005182 ORTHO05D006631 1.4e-19 100.9 65 66.2
QL09p000526 Quercus lobata HOM05D005182 ORTHO05D006631 1.8e-19 100.5 75 62.7
Os02g0296800 Oryza sativa ssp. japonica HOM05D005182 ORTHO05D006631 2.0e-18 97.1 63 68.3
MCO08G118 Micromonas commoda HOM05D005182 ORTHO05D006631 2.6e-18 96.7 133 39.8
AagrBONN_evm.TU.Sc2ySwM_228.389 Anthoceros agrestis HOM05D005182 ORTHO05D006631 4.4e-18 95.9 69 62.3
SEGI_02514 Sequoiadendron giganteum HOM05D005182 ORTHO05D006631 1.3e-17 94.4 119 47.1
Cpa.g.sc130.27 Carica papaya HOM05D005182 ORTHO05D006631 6.3e-17 92.0 112 47.3
arahy.Tifrunner.gnm1.ann1.0YQ56L Arachis hypogaea HOM05D005182 ORTHO05D006631 8.2e-17 91.7 152 37.5
MSTRG.15523 Avicennia marina HOM05D005182 ORTHO05D006631 8.2e-17 91.7 135 42.2
Prupe.3G289700 Prunus persica HOM05D005182 ORTHO05D006631 1.4e-16 90.9 65 60.0
Duzib187G0244 Durio zibethinus HOM05D005182 ORTHO05D006631 1.8e-16 90.5 65 61.5
Cpa.g.sc130.26 Carica papaya HOM05D005182 ORTHO05D006631 4.5e-15 85.9 106 44.3
Mapoly0034s0026 Marchantia polymorpha HOM05D005182 ORTHO05D006631 8.5e-14 81.6 114 41.2
Cpa.g.c30633.2 Carica papaya HOM05D005182 ORTHO05D006631 7.2e-13 78.6 59 61.0
RcHm_v2.0_Chr7g0228061 Rosa chinensis HOM05D005182 ORTHO05D006631 1.0e-11 74.7 70 52.9
Zm00001eb085260 Zea mays HOM05D005182 ORTHO05D006631 1.8e-11 73.9 54 66.7
Cre04.g214100 Chlamydomonas reinhardtii HOM05D005182 ORTHO05D006631 4.1e-08 62.8 116 30.2
Dinv33459 Davidia involucrata HOM05D005182 ORTHO05D006631 2.9e-06 56.6 33 69.7
Prupe.3G207400 Prunus persica HOM05D005182 ORTHO05D006631 5.0e-06 55.8 85 40.0


User provided reference genes

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