Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.12g060320 Amaranthus hybridus HOM05D007649 ORTHO05D009668 4.4e-78 294.7 160 100.0
EL10Ac2g02528 Beta vulgaris HOM05D007649 ORTHO05D009668 2.7e-27 125.9 103 70.9
Hund02998 Selenicereus undatus HOM05D007649 ORTHO05D009668 3.5e-27 125.6 103 66.0
AUR62024825 Chenopodium quinoa HOM05D007649 ORTHO05D009668 1.3e-26 123.6 101 70.3
AUR62032390 Chenopodium quinoa HOM05D007649 ORTHO05D009668 1.6e-24 116.7 101 65.3
Sc09g0008910 Simmondsia chinensis HOM05D007649 ORTHO05D009668 1.3e-21 107.1 97 60.8
GSVIVG01035747001 Vitis vinifera HOM05D007649 ORTHO05D009668 1.8e-18 96.7 109 53.2
Nitab4.5_0012591g0010 Nicotiana tabacum HOM05D007649 ORTHO05D009668 1.3e-16 90.5 86 57.0
Nitab4.5_0000250g0070 Nicotiana tabacum HOM05D007649 ORTHO05D009668 1.1e-15 87.4 89 55.1
Sopen08g021900 Solanum pennellii HOM05D007649 ORTHO05D009668 2.4e-15 86.3 89 52.8
Peaxi162Scf00105g01010 Petunia axillaris HOM05D007649 ORTHO05D009668 5.3e-15 85.1 86 55.8
TAR383G0510 Trochodendron aralioides HOM05D007649 ORTHO05D009668 2.6e-14 82.8 101 48.5
Dinv30235 Davidia involucrata HOM05D007649 ORTHO05D009668 4.5e-14 82.0 90 53.3
CAN.G1384.1 Capsicum annuum HOM05D007649 ORTHO05D009668 5.8e-14 81.6 93 50.5
Atru.chr7.2308 Acer truncatum HOM05D007649 ORTHO05D009668 1.3e-13 80.5 97 48.5
CiPaw.08G016800 Carya illinoinensis HOM05D007649 ORTHO05D009668 1.3e-13 80.5 98 49.0
FvH4_7g03290 Fragaria vesca HOM05D007649 ORTHO05D009668 1.7e-13 80.1 97 45.4
RcHm_v2.0_Chr1g0325561 Rosa chinensis HOM05D007649 ORTHO05D009668 1.7e-13 80.1 86 48.8
Solyc08g067980.3 Solanum lycopersicum HOM05D007649 ORTHO05D009668 1.7e-13 80.1 98 46.9
Lsat_1_v5_gn_6_8481 Lactuca sativa HOM05D007649 ORTHO05D009668 2.9e-13 79.3 98 52.0
Duzib150G1676 Durio zibethinus HOM05D007649 ORTHO05D009668 1.4e-12 77.0 102 49.0
Gohir.D07G028200 Gossypium hirsutum HOM05D007649 ORTHO05D009668 1.4e-12 77.0 72 56.9
Gorai.001G029500 Gossypium raimondii HOM05D007649 ORTHO05D009668 1.4e-12 77.0 72 56.9
FAN10G0583 Fragaria x ananassa HOM05D007649 ORTHO05D009668 2.5e-12 76.3 67 52.2
Eucgr.C02878 Eucalyptus grandis HOM05D007649 ORTHO05D009668 5.5e-12 75.1 66 54.5
HanXRQChr10g0313021 Helianthus annuus HOM05D007649 ORTHO05D009668 5.5e-12 75.1 97 45.4
QL12p031020 Quercus lobata HOM05D007649 ORTHO05D009668 5.5e-12 75.1 82 50.0
CSS0042406 Camellia sinensis var. sinensis HOM05D007649 ORTHO05D009668 7.1e-12 74.7 65 56.9
Haze_21646 Corylus avellana HOM05D007649 ORTHO05D009668 7.1e-12 74.7 83 50.6
MBI04_g10458_MAGBIO Magnolia biondii HOM05D007649 ORTHO05D009668 7.1e-12 74.7 74 51.4
Nn2g11782 Nelumbo nucifera HOM05D007649 ORTHO05D009668 9.3e-12 74.3 102 44.1
ECA233G5733 Erigeron canadensis HOM05D007649 ORTHO05D009668 1.2e-11 73.9 79 51.9
Prupe.1G464700 Prunus persica HOM05D007649 ORTHO05D009668 1.2e-11 73.9 79 46.8
Oeu033993.1 Olea europaea HOM05D007649 ORTHO05D009668 1.6e-11 73.6 63 60.3
Oeu033995.1 Olea europaea HOM05D007649 ORTHO05D009668 1.6e-11 73.6 63 60.3
Cpa.g.sc205.32 Carica papaya HOM05D007649 ORTHO05D009668 3.5e-11 72.4 96 44.8
Medtr3g108310 Medicago truncatula HOM05D007649 ORTHO05D009668 3.5e-11 72.4 98 46.9
Aqoxy7G01751 Aquilegia oxysepala HOM05D007649 ORTHO05D009668 6.1e-11 71.6 99 42.4
Manes.16G069200 Manihot esculenta HOM05D007649 ORTHO05D009668 6.1e-11 71.6 94 47.9
Thhalv10005188m.g Eutrema salsugineum HOM05D007649 ORTHO05D009668 1.0e-10 70.9 91 44.0
Glyma.04G073400 Glycine max HOM05D007649 ORTHO05D009668 1.0e-10 70.9 98 44.9
Rhsim07G0149600 Rhododendron simsii HOM05D007649 ORTHO05D009668 1.0e-10 70.9 100 43.0
CANSAT25G0191 Cannabis sativa HOM05D007649 ORTHO05D009668 1.3e-10 70.5 98 42.9
Lj1g0000027 Lotus japonicus HOM05D007649 ORTHO05D009668 1.3e-10 70.5 79 46.8
PGR044G0128 Punica granatum HOM05D007649 ORTHO05D009668 1.3e-10 70.5 96 42.7
Glyma.06G074500 Glycine max HOM05D007649 ORTHO05D009668 1.8e-10 70.1 98 43.9
Actinidia13297 Actinidia chinensis HOM05D007649 ORTHO05D009668 2.3e-10 69.7 82 47.6
CDE05G1266 Ceratophyllum demersum HOM05D007649 ORTHO05D009668 2.3e-10 69.7 98 41.8
PGSC0003DMG400014488 Solanum tuberosum HOM05D007649 ORTHO05D009668 2.3e-10 69.7 55 61.8
THA.LOC104799213 Tarenaya hassleriana HOM05D007649 ORTHO05D009668 2.3e-10 69.7 85 44.7
CsaV3_3G046810 Cucumis sativus L. HOM05D007649 ORTHO05D009668 3.0e-10 69.3 86 40.7
TPR.G12493 Trifolium pratense HOM05D007649 ORTHO05D009668 3.0e-10 69.3 79 48.1
SalBow4G3148 Salvia bowleyana HOM05D007649 ORTHO05D009668 3.9e-10 68.9 81 44.4
ClCG05G017300 Citrullus lanatus HOM05D007649 ORTHO05D009668 5.1e-10 68.6 86 40.7
Psat5g025760 Pisum sativum HOM05D007649 ORTHO05D009668 6.7e-10 68.2 98 42.9
Cc08_g08160 Coffea canephora HOM05D007649 ORTHO05D009668 8.7e-10 67.8 79 44.3
MELO3C003657.2 Cucumis melo HOM05D007649 ORTHO05D009668 8.7e-10 67.8 86 40.7
Aa31LG11G4690 Aethionema arabicum HOM05D007649 ORTHO05D009668 1.1e-09 67.4 98 41.8
MD08G1134800 Malus domestica HOM05D007649 ORTHO05D009668 1.1e-09 67.4 76 46.1
Phvul.009G099200 Phaseolus vulgaris HOM05D007649 ORTHO05D009668 1.1e-09 67.4 79 45.6
C02p59430 Brassica napus HOM05D007649 ORTHO05D009668 1.5e-09 67.0 77 45.5
BolC7t44754H Brassica oleracea HOM05D007649 ORTHO05D009668 1.5e-09 67.0 83 42.2
Duzib168G0100 Durio zibethinus HOM05D007649 ORTHO05D009668 1.5e-09 67.0 96 43.8
Migut.N01074 Erythranthe guttata HOM05D007649 ORTHO05D009668 1.5e-09 67.0 77 46.8
AL6G37400 Arabidopsis lyrata HOM05D007649 ORTHO05D009668 1.9e-09 66.6 95 41.1
A06p36270 Brassica napus HOM05D007649 ORTHO05D009668 1.9e-09 66.6 77 45.5
BraA06t26549Z Brassica rapa HOM05D007649 ORTHO05D009668 1.9e-09 66.6 77 45.5
PSO063G4106 Papaver somniferum HOM05D007649 ORTHO05D009668 2.5e-09 66.2 98 42.9
AT5G25570 Arabidopsis thaliana HOM05D007649 ORTHO05D009668 3.3e-09 65.9 97 40.2
Carub.0006s2344 Capsella rubella HOM05D007649 ORTHO05D009668 3.3e-09 65.9 95 42.1
Sp2g21960 Schrenkiella parvula HOM05D007649 ORTHO05D009668 3.3e-09 65.9 104 39.4
arahy.Tifrunner.gnm1.ann1.0NF80D Arachis hypogaea HOM05D007649 ORTHO05D009668 4.3e-09 65.5 98 41.8
arahy.Tifrunner.gnm1.ann1.3N1A5Y Arachis hypogaea HOM05D007649 ORTHO05D009668 4.3e-09 65.5 98 41.8
CARHR187800 Cardamine hirsuta HOM05D007649 ORTHO05D009668 4.3e-09 65.5 97 40.2
BolC2t12006H Brassica oleracea HOM05D007649 ORTHO05D009668 5.7e-09 65.1 65 47.7
FAN06G3614 Fragaria x ananassa HOM05D007649 ORTHO05D009668 9.7e-09 64.3 55 52.7
Sed0022915 Sechium edule HOM05D007649 ORTHO05D009668 9.7e-09 64.3 63 49.2
Potri.006G245100 Populus trichocarpa HOM05D007649 ORTHO05D009668 1.3e-08 63.9 77 48.1
Ciclev10010030m.g Citrus clementina HOM05D007649 ORTHO05D009668 1.6e-08 63.5 85 44.7
TWI63G0355 Tripterygium wilfordii HOM05D007649 ORTHO05D009668 2.2e-08 63.2 82 40.2
Sabra06G0191900 Salix brachista HOM05D007649 ORTHO05D009668 4.8e-08 62.0 62 53.2
Potri.012G125000 Populus trichocarpa HOM05D007649 ORTHO05D009668 2.4e-07 59.7 77 46.8
Sed0003009 Sechium edule HOM05D007649 ORTHO05D009668 3.1e-07 59.3 63 46.0
vmacro05350 Vaccinium macrocarpon HOM05D007649 ORTHO05D009668 1.5e-06 57.0 53 49.1
FAN03G3370 Fragaria x ananassa HOM05D007649 ORTHO05D009668 2.0e-06 56.6 85 38.8
ATR0037G059 Amborella trichopoda HOM05D007649 ORTHO05D009668 7.7e-06 54.7 88 42.0


User provided reference genes

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