Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.12g060060 Amaranthus hybridus HOM05D005866 ORTHO05D007078 4.8e-111 404.8 257 100.0
AUR62042946 Chenopodium quinoa HOM05D005866 ORTHO05D007078 1.7e-76 290.0 252 62.7
AUR62025814 Chenopodium quinoa HOM05D005866 ORTHO05D007078 9.9e-72 274.2 262 60.7
CiPaw.09G206400 Carya illinoinensis HOM05D005866 ORTHO05D007078 1.6e-53 213.8 253 56.1
Sc01g0006840 Simmondsia chinensis HOM05D005866 ORTHO05D007078 6.0e-53 211.8 253 62.8
Dinv35509 Davidia involucrata HOM05D005866 ORTHO05D007078 1.0e-52 211.1 257 58.0
Dinv14530 Davidia involucrata HOM05D005866 ORTHO05D007078 1.3e-52 210.7 257 58.0
Cpa.g.sc56.117 Carica papaya HOM05D005866 ORTHO05D007078 2.5e-51 206.5 259 57.5
Duzib128G1899 Durio zibethinus HOM05D005866 ORTHO05D007078 3.3e-51 206.1 256 61.3
Potri.006G096700 Populus trichocarpa HOM05D005866 ORTHO05D007078 1.6e-50 203.8 255 47.1
GSVIVG01034004001 Vitis vinifera HOM05D000012 ORTHO05D000567 2.1e-50 203.4 256 61.7
vmacro08602 Vaccinium macrocarpon HOM05D005866 ORTHO05D007078 3.7e-50 202.6 256 58.6
Thecc.05G021700 Theobroma cacao HOM05D005866 ORTHO05D007078 6.2e-50 201.8 258 58.5
Sabra06G0074300 Salix brachista HOM05D005866 ORTHO05D007078 1.4e-49 200.7 257 56.0
Haze_20956 Corylus avellana HOM05D005866 ORTHO05D007078 5.3e-49 198.7 255 57.6
MD04G1147400 Malus domestica HOM05D005866 ORTHO05D007078 1.2e-48 197.6 255 46.7
Prupe.6G271100 Prunus persica HOM05D000012 ORTHO05D000567 1.2e-48 197.6 262 52.7
TWI74G1551 Tripterygium wilfordii HOM05D005866 ORTHO05D007078 1.2e-48 197.6 255 58.4
Manes.09G102400 Manihot esculenta HOM05D005866 ORTHO05D007078 2.6e-48 196.4 256 59.8
CSS0007949 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 4.5e-48 195.7 258 55.0
CSS0025068 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 4.5e-48 195.7 258 55.0
Gohir.A01G225500 Gossypium hirsutum HOM05D005866 ORTHO05D007078 5.8e-48 195.3 255 61.6
Ciclev10012537m.g Citrus clementina HOM05D005866 ORTHO05D007078 4.9e-47 192.2 255 60.8
TAR623G0986 Trochodendron aralioides HOM05D005866 ORTHO05D007078 6.4e-47 191.8 257 56.8
PGR031G2542 Punica granatum HOM05D005866 ORTHO05D007078 1.9e-46 190.3 222 65.8
FAN09G2814 Fragaria x ananassa HOM05D000012 ORTHO05D007078 4.2e-46 189.1 255 48.2
Hund02698 Selenicereus undatus HOM05D005866 ORTHO05D007078 5.5e-46 188.7 243 45.7
FvH4_6g11980 Fragaria vesca HOM05D005866 ORTHO05D007078 7.1e-46 188.3 255 51.0
FAN05G0379 Fragaria x ananassa HOM05D000012 ORTHO05D000567 7.1e-46 188.3 255 56.5
Gohir.D01G215200 Gossypium hirsutum HOM05D005866 ORTHO05D007078 9.3e-46 188.0 253 46.6
AT3G09050 Arabidopsis thaliana HOM05D005866 ORTHO05D007078 4.6e-45 185.7 206 62.1
FAN14G3397 Fragaria x ananassa HOM05D000012 ORTHO05D000567 4.6e-45 185.7 255 50.2
FAN02G1355 Fragaria x ananassa HOM05D005866 ORTHO05D007078 3.0e-44 183.0 255 50.6
Thhalv10021354m.g Eutrema salsugineum HOM05D005866 ORTHO05D007078 5.1e-44 182.2 259 54.1
Eucgr.B02792 Eucalyptus grandis HOM05D005866 ORTHO05D007078 8.7e-44 181.4 263 55.9
Glyma.18G197300 Glycine max HOM05D005866 ORTHO05D007078 1.9e-43 180.3 220 45.9
CsaV3_4G026010 Cucumis sativus L. HOM05D005866 ORTHO05D007078 2.5e-43 179.9 260 44.6
FAN14G3518 Fragaria x ananassa HOM05D005866 ORTHO05D007078 3.3e-43 179.5 256 42.6
Lj1g0011685 Lotus japonicus HOM05D005866 ORTHO05D007078 3.3e-43 179.5 248 44.4
Carub.0003s0821 Capsella rubella HOM05D005866 ORTHO05D007078 4.3e-43 179.1 251 53.0
unitig_578.g15896 Utricularia gibba HOM05D005866 ORTHO05D007078 5.6e-43 178.7 254 53.1
AL3G20110 Arabidopsis lyrata HOM05D005866 ORTHO05D007078 7.4e-43 178.3 199 59.8
BcaC09g48050 Brassica carinata HOM05D005866 ORTHO05D007078 1.3e-42 177.6 218 58.7
Glyma.07G145800 Glycine max HOM05D005866 ORTHO05D007078 1.6e-42 177.2 250 44.0
Nn2g11373 Nelumbo nucifera HOM05D005866 ORTHO05D007078 1.6e-42 177.2 236 57.6
COL.COLO4_14593 Corchorus olitorius HOM05D005866 ORTHO05D007078 2.1e-42 176.8 261 57.5
A05p39790 Brassica napus HOM05D005866 ORTHO05D007078 2.8e-42 176.4 221 58.4
BraA01t04319Z Brassica rapa HOM05D005866 ORTHO05D007078 2.8e-42 176.4 201 48.8
BraA05t22763Z Brassica rapa HOM05D005866 ORTHO05D007078 2.8e-42 176.4 221 58.4
Aqoxy1G00701 Aquilegia oxysepala HOM05D005866 ORTHO05D007078 4.8e-42 175.6 255 43.5
BcaC05g29639 Brassica carinata HOM05D005866 ORTHO05D007078 4.8e-42 175.6 221 57.5
Peaxi162Scf00141g00718 Petunia axillaris HOM05D005866 ORTHO05D007078 4.8e-42 175.6 202 63.4
VMungo1383G0141 Vigna mungo HOM05D005866 ORTHO05D007078 6.2e-42 175.3 250 44.0
THA.LOC104816219 Tarenaya hassleriana HOM05D005866 ORTHO05D007078 1.1e-41 174.5 214 63.6
C05p58830 Brassica napus HOM05D005866 ORTHO05D007078 1.4e-41 174.1 221 57.9
CARHR083410 Cardamine hirsuta HOM05D005866 ORTHO05D007078 1.4e-41 174.1 200 60.0
EL10Ac6g13875 Beta vulgaris HOM05D005866 ORTHO05D007078 2.4e-41 173.3 118 72.9
Phvul.008G107300 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 2.4e-41 173.3 250 46.0
BolC5t34535H Brassica oleracea HOM05D005866 ORTHO05D007078 3.1e-41 172.9 221 57.9
Sp3g07500 Schrenkiella parvula HOM05D005866 ORTHO05D007078 3.1e-41 172.9 199 60.3
BolC1t05477H Brassica oleracea HOM05D005866 ORTHO05D007078 4.0e-41 172.6 205 59.5
ClCG04G007220 Citrullus lanatus HOM05D005866 ORTHO05D007078 5.3e-41 172.2 214 54.7
Cc06_g01630 Coffea canephora HOM05D005866 ORTHO05D007078 5.3e-41 172.2 221 63.8
Aa31LG3G1580 Aethionema arabicum HOM05D005866 ORTHO05D007078 6.9e-41 171.8 222 44.6
BcaC09g48005 Brassica carinata HOM05D005866 ORTHO05D007078 6.9e-41 171.8 219 57.5
Ca_07614_v3 Cicer arietinum L. HOM05D005866 ORTHO05D007078 9.0e-41 171.4 248 44.4
Sed0005881 Sechium edule HOM05D005866 ORTHO05D007078 9.0e-41 171.4 256 51.2
Gorai.002G261300 Gossypium raimondii HOM05D005866 ORTHO05D007078 1.5e-40 170.6 253 58.5
Lj3g0009346 Lotus japonicus HOM05D005866 ORTHO05D007078 2.0e-40 170.2 254 42.5
ECA247G0127 Erigeron canadensis HOM05D005866 ORTHO05D007078 2.6e-40 169.9 260 40.4
TPR.G1580 Trifolium pratense HOM05D005866 ORTHO05D007078 3.4e-40 169.5 249 43.0
MSTRG.5595 Avicennia marina HOM05D005866 ORTHO05D007078 7.6e-40 168.3 256 57.0
MELO3C003227.2 Cucumis melo HOM05D005866 ORTHO05D007078 2.9e-39 166.4 213 53.1
Medtr7g067000 Medicago truncatula HOM05D005866 ORTHO05D007078 3.8e-39 166.0 259 42.1
CANSAT35G0638 Cannabis sativa HOM05D005866 ORTHO05D007078 1.1e-38 164.5 268 53.0
Nitab4.5_0004912g0060 Nicotiana tabacum HOM05D005866 ORTHO05D007078 1.4e-38 164.1 217 57.6
Psat3g131120 Pisum sativum HOM05D005866 ORTHO05D007078 1.4e-38 164.1 250 40.8
Atru.chr8.2203 Acer truncatum HOM05D005866 ORTHO05D007078 1.9e-38 163.7 272 39.0
arahy.Tifrunner.gnm1.ann1.Q1H550 Arachis hypogaea HOM05D005866 ORTHO05D007078 1.9e-38 163.7 262 40.5
Lj2C80T14 Lonicera japonica HOM05D005866 ORTHO05D007078 1.9e-38 163.7 240 42.1
PGSC0003DMG400011090 Solanum tuberosum HOM05D005866 ORTHO05D007078 1.9e-38 163.7 263 50.6
DCAR_015452 Daucus carota HOM05D005866 ORTHO05D007078 3.2e-38 162.9 256 55.1
Lsat_1_v5_gn_9_36061 Lactuca sativa HOM05D005866 ORTHO05D007078 3.2e-38 162.9 256 47.7
PSO384G0902 Papaver somniferum HOM05D005866 ORTHO05D007078 4.2e-38 162.5 254 52.8
Sopen09g007090 Solanum pennellii HOM05D005866 ORTHO05D007078 2.1e-37 160.2 225 57.3
CAN.G1297.4 Capsicum annuum HOM05D005866 ORTHO05D007078 4.6e-37 159.1 245 51.8
Sopen10g034540 Solanum pennellii HOM05D005866 ORTHO05D007078 7.9e-37 158.3 263 49.0
Migut.J00221 Erythranthe guttata HOM05D005866 ORTHO05D007078 3.0e-36 156.4 259 53.7
BcaC09g48006 Brassica carinata HOM05D005866 ORTHO05D007078 2.5e-35 153.3 219 43.8
Nitab4.5_0001837g0050 Nicotiana tabacum HOM05D005866 ORTHO05D007078 2.5e-35 153.3 202 60.9
arahy.Tifrunner.gnm1.ann1.LP8IIZ Arachis hypogaea HOM05D005866 ORTHO05D007078 1.3e-34 151.0 259 39.4
Phvul.010G008600 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 1.6e-34 150.6 220 52.7
Nitab4.5_0000008g0810 Nicotiana tabacum HOM05D005866 ORTHO05D007078 2.1e-34 150.2 256 52.0
VMungo0331G1214 Vigna mungo HOM05D005866 ORTHO05D007078 2.1e-34 150.2 234 51.3
Psat7g247600 Pisum sativum HOM05D005866 ORTHO05D007078 2.8e-34 149.8 254 36.6
CAN.G338.58 Capsicum annuum HOM05D005866 ORTHO05D007078 1.1e-33 147.9 222 56.8
Solyc10g085080.3 Solanum lycopersicum HOM05D005866 ORTHO05D007078 2.4e-33 146.7 282 46.5
arahy.Tifrunner.gnm1.ann1.QNAF0W Arachis hypogaea HOM05D005866 ORTHO05D007078 1.5e-32 144.1 262 38.5
Lalb_Chr07g0193301 Lupinus albus HOM05D005866 ORTHO05D007078 2.0e-32 143.7 256 40.2
PGSC0003DMG400020319 Solanum tuberosum HOM05D005866 ORTHO05D007078 1.3e-31 141.0 230 54.3
Zm00001eb367320 Zea mays HOM05D005866 ORTHO05D007078 6.5e-31 138.7 224 48.2
Os01g0853000 Oryza sativa ssp. japonica HOM05D005866 ORTHO05D007078 1.4e-30 137.5 250 46.4
arahy.Tifrunner.gnm1.ann1.T33YJ3 Arachis hypogaea HOM05D005866 ORTHO05D007078 1.9e-30 137.1 259 36.7
arahy.Tifrunner.gnm1.ann1.F83RTD Arachis hypogaea HOM05D005866 ORTHO05D007078 2.5e-30 136.7 259 36.7
RcHm_v2.0_Chr3g0463811 Rosa chinensis HOM05D005866 ORTHO05D007078 2.5e-30 136.7 134 53.7
Medtr4g015010 Medicago truncatula HOM05D005866 ORTHO05D007078 4.2e-30 136.0 249 44.2
Peaxi162Scf00009g01923 Petunia axillaris HOM05D005866 ORTHO05D007078 4.2e-30 136.0 247 49.0
Glyma.03G077300 Glycine max HOM05D005866 ORTHO05D007078 5.5e-30 135.6 253 51.0
Solyc09g014215.2 Solanum lycopersicum HOM05D005866 ORTHO05D007078 5.5e-30 135.6 225 53.8
Nitab4.5_0000652g0170 Nicotiana tabacum HOM05D005866 ORTHO05D007078 1.6e-29 134.0 246 47.6
CDE03G0505 Ceratophyllum demersum HOM05D005866 ORTHO05D007078 2.7e-29 133.3 223 49.3
TPR.G5230 Trifolium pratense HOM05D005866 ORTHO05D007078 3.6e-29 132.9 266 44.0
Actinidia05342 Actinidia chinensis HOM05D005866 ORTHO05D007078 4.6e-29 132.5 189 55.0
TAR633G2503 Trochodendron aralioides HOM05D005866 ORTHO05D007078 4.6e-29 132.5 121 56.2
SGA_v2.0_scaffold85G26760 Striga asiatica HOM05D005866 ORTHO05D007078 3.0e-28 129.8 135 46.7
arahy.Tifrunner.gnm1.ann1.6JA19R Arachis hypogaea HOM05D005866 ORTHO05D007078 8.7e-28 128.3 222 39.2
Lj2P1203T18 Lonicera japonica HOM05D005866 ORTHO05D007078 7.4e-27 125.2 137 50.4
ECA247G1841 Erigeron canadensis HOM05D005866 ORTHO05D007078 1.3e-26 124.4 213 38.5
PSO339G5866 Papaver somniferum HOM05D005866 ORTHO05D007078 1.5e-24 117.5 189 53.4
Ah.07g199780 Amaranthus hybridus HOM05D005866 ORTHO05D007078 1.1e-22 111.3 80 75.0
ATR0618G104 Amborella trichopoda HOM05D005866 ORTHO05D007078 1.5e-19 100.9 136 41.9
Actinidia01118 Actinidia chinensis HOM05D005866 ORTHO05D007078 1.1e-17 94.7 83 59.0
Dinv37082 Davidia involucrata HOM05D005866 ORTHO05D007078 3.6e-13 79.7 102 43.1
HanXRQChr10g0287001 Helianthus annuus HOM05D005866 ORTHO05D007078 7.9e-13 78.6 87 52.9
Actinidia01119 Actinidia chinensis HOM05D005866 ORTHO05D007078 1.0e-12 78.2 85 51.8
AagrBONN_evm.TU.Sc2ySwM_117.2545 Anthoceros agrestis HOM05D005866 ORTHO05D007078 1.0e-12 78.2 218 26.1
Pp3c5_19930 Physcomitrium patens HOM05D005866 ORTHO05D007078 5.2e-12 75.9 210 27.6
SEGI_33363 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 5.7e-11 72.4 204 27.0
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 1.3e-10 71.2 229 26.6
Mapoly0004s0086 Marchantia polymorpha HOM05D005866 ORTHO05D007078 8.2e-10 68.6 216 23.1
Lalb_Chr03g0043011 Lupinus albus HOM05D005866 ORTHO05D007078 2.4e-09 67.0 85 50.6
ATR0618G115 Amborella trichopoda HOM05D005866 ORTHO05D007078 2.0e-08 63.9 44 72.7
SEGI_17473 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 4.5e-08 62.8 181 27.1
SGA_v2.0_scaffold1443G53951 Striga asiatica HOM05D005866 ORTHO05D007078 5.0e-07 59.3 49 57.1


User provided reference genes

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