Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.12g059580 Amaranthus hybridus HOM05D003892 ORTHO05D004522 0.0e+00 1154.8 595 100.0
EL10Ac5g11803 Beta vulgaris HOM05D003892 ORTHO05D004522 3.0e-233 812.0 630 70.5
AUR62038416 Chenopodium quinoa HOM05D003892 ORTHO05D004522 8.6e-228 793.9 633 69.5
AUR62036307 Chenopodium quinoa HOM05D003892 ORTHO05D004522 9.8e-224 780.4 635 69.1
Hund10790 Selenicereus undatus HOM05D003892 ORTHO05D004522 7.1e-198 694.5 633 61.5
Sc22g0003030 Simmondsia chinensis HOM05D003892 ORTHO05D004522 2.6e-160 569.7 626 55.3
CiPaw.10G021500 Carya illinoinensis HOM05D003892 ORTHO05D004522 7.9e-157 558.1 641 52.3
QL07p026283 Quercus lobata HOM05D003892 ORTHO05D004522 3.9e-156 555.8 643 51.5
Cfa017615 Carpinus fangiana HOM05D003892 ORTHO05D004522 7.4e-155 551.6 642 51.4
Haze_20130 Corylus avellana HOM05D003892 ORTHO05D004522 4.7e-149 532.3 674 48.7
GSVIVG01015854001 Vitis vinifera HOM05D003892 ORTHO05D004522 4.7e-149 532.3 643 51.5
CSS0037074 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 5.1e-148 528.9 645 50.1
TAR633G1336 Trochodendron aralioides HOM05D003892 ORTHO05D004522 2.6e-147 526.6 646 49.7
COL.COLO4_29492 Corchorus olitorius HOM05D003892 ORTHO05D004522 5.3e-145 518.8 637 49.5
Actinidia03963 Actinidia chinensis HOM05D003892 ORTHO05D004522 7.7e-144 515.0 665 49.3
Gohir.D04G093300 Gossypium hirsutum HOM05D003892 ORTHO05D004522 5.0e-143 512.3 635 51.0
Lj1C1061G1 Lonicera japonica HOM05D003892 ORTHO05D004522 1.5e-142 510.8 637 49.0
Thecc.05G110400 Theobroma cacao HOM05D003892 ORTHO05D004522 1.9e-142 510.4 639 49.3
Nn2g14423 Nelumbo nucifera HOM05D003892 ORTHO05D004522 5.5e-142 508.8 652 48.3
Hma1.2p1_0304F.1_g119340 Hydrangea macrophylla HOM05D003892 ORTHO05D004522 1.2e-141 507.7 641 48.7
Potri.016G065600 Populus trichocarpa HOM05D003892 ORTHO05D004522 1.2e-141 507.7 644 49.2
Gorai.009G395500 Gossypium raimondii HOM05D003892 ORTHO05D004522 6.1e-141 505.4 635 50.6
Atru.chr8.1281 Acer truncatum HOM05D003892 ORTHO05D004522 1.8e-140 503.8 665 47.7
CANSAT64G1569 Cannabis sativa HOM05D003892 ORTHO05D004522 2.6e-139 500.0 644 49.2
Manes.08G037500 Manihot esculenta HOM05D003892 ORTHO05D004522 3.3e-139 499.6 639 50.1
Ciclev10011278m.g Citrus clementina HOM05D003892 ORTHO05D004522 7.5e-139 498.4 644 49.4
Duzib106G1451 Durio zibethinus HOM05D003892 ORTHO05D004522 2.2e-138 496.9 640 48.6
Duzib128G1914 Durio zibethinus HOM05D003892 ORTHO05D004522 1.1e-137 494.6 640 48.3
Potri.006G199200 Populus trichocarpa HOM05D003892 ORTHO05D004522 2.0e-136 490.3 639 48.4
Sed0022353 Sechium edule HOM05D003892 ORTHO05D004522 1.3e-135 487.6 630 48.9
Lj1g0007585 Lotus japonicus HOM05D003892 ORTHO05D004522 1.7e-135 487.3 639 47.6
TWI15G0645 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 2.9e-135 486.5 645 49.1
Glyma.03G205000 Glycine max HOM05D003892 ORTHO05D004522 5.0e-135 485.7 632 47.8
Gohir.A01G199500 Gossypium hirsutum HOM05D003892 ORTHO05D004522 5.5e-134 482.3 637 48.0
Prupe.7G089700 Prunus persica HOM05D003892 ORTHO05D004522 7.2e-134 481.9 639 47.6
DCAR_013462 Daucus carota HOM05D003892 ORTHO05D004522 1.4e-132 477.6 643 46.8
Lalb_Chr01g0017711 Lupinus albus HOM05D003892 ORTHO05D004522 6.8e-132 475.3 653 47.0
Rhsim03G0058500 Rhododendron simsii HOM05D003892 ORTHO05D004522 6.8e-132 475.3 645 46.2
MD12G1046200 Malus domestica HOM05D003892 ORTHO05D004522 8.8e-132 474.9 635 46.3
Lalb_Chr25g0287841 Lupinus albus HOM05D003892 ORTHO05D004522 1.5e-131 474.2 623 46.7
Psat3g027080 Pisum sativum HOM05D003892 ORTHO05D004522 3.4e-131 473.0 634 47.2
Gohir.D01G189600 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.3e-130 471.1 637 47.6
Gorai.002G233300 Gossypium raimondii HOM05D003892 ORTHO05D004522 4.8e-130 469.2 637 47.1
ClCG10G017850 Citrullus lanatus HOM05D003892 ORTHO05D004522 6.3e-130 468.8 635 46.9
Phvul.001G198500 Phaseolus vulgaris HOM05D003892 ORTHO05D004522 6.3e-130 468.8 633 47.4
TPR.G34451 Trifolium pratense HOM05D003892 ORTHO05D004522 3.1e-129 466.5 622 47.4
VMungo1383G0340 Vigna mungo HOM05D003892 ORTHO05D004522 1.2e-128 464.5 634 47.3
RcHm_v2.0_Chr3g0477411 Rosa chinensis HOM05D003892 ORTHO05D004522 7.7e-128 461.8 630 47.0
arahy.Tifrunner.gnm1.ann1.H4389H Arachis hypogaea HOM05D003892 ORTHO05D004522 1.7e-127 460.7 666 45.3
Glyma.19G202400 Glycine max HOM05D003892 ORTHO05D004522 2.2e-127 460.3 634 46.2
arahy.Tifrunner.gnm1.ann1.IGZ3F9 Arachis hypogaea HOM05D003892 ORTHO05D004522 2.9e-127 459.9 610 47.2
FAN05G2923 Fragaria x ananassa HOM05D003892 ORTHO05D004522 6.5e-127 458.8 636 46.5
Ca_09081_v3 Cicer arietinum L. HOM05D003892 ORTHO05D004522 1.9e-126 457.2 633 45.2
MD14G1044900 Malus domestica HOM05D003892 ORTHO05D004522 3.2e-126 456.4 639 45.1
Aqoxy1G00583 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 4.2e-126 456.1 650 46.6
Cc06_g06980 Coffea canephora HOM05D003892 ORTHO05D004522 7.2e-126 455.3 614 45.8
Aqoxy2G02397 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 9.4e-126 454.9 653 45.6
Medtr7g106900 Medicago truncatula HOM05D003892 ORTHO05D004522 9.4e-126 454.9 632 45.4
FAN02G1525 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.6e-125 454.1 636 45.8
HanXRQChr02g0052851 Helianthus annuus HOM05D003892 ORTHO05D004522 3.6e-125 453.0 639 47.7
arahy.Tifrunner.gnm1.ann1.L9LT45 Arachis hypogaea HOM05D003892 ORTHO05D004522 2.3e-124 450.3 645 45.6
Lj6g0017825 Lotus japonicus HOM05D003892 ORTHO05D004522 2.3e-124 450.3 611 47.5
Lsat_1_v5_gn_6_34240 Lactuca sativa HOM05D003892 ORTHO05D004522 3.0e-124 449.9 611 47.5
PGR004G2391 Punica granatum HOM05D003892 ORTHO05D004522 3.4e-123 446.4 636 44.8
Eucgr.A02543 Eucalyptus grandis HOM05D003892 ORTHO05D004522 4.4e-123 446.0 662 44.6
Oeu058130.1 Olea europaea HOM05D003892 ORTHO05D004522 9.8e-123 444.9 696 42.7
FAN05G3327 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.7e-122 444.1 667 44.5
MSTRG.5909 Avicennia marina HOM05D003892 ORTHO05D004522 2.8e-122 443.4 601 45.1
FAN14G4612 Fragaria x ananassa HOM05D003892 ORTHO05D004522 2.8e-122 443.4 667 43.8
MELO3C009588.2 Cucumis melo HOM05D003892 ORTHO05D004522 1.4e-121 441.0 637 45.2
Sopen01g002690 Solanum pennellii HOM05D003892 ORTHO05D004522 1.8e-121 440.7 611 43.7
HanXRQChr13g0398781 Helianthus annuus HOM05D003892 ORTHO05D004522 3.1e-121 439.9 615 46.5
Solyc01g006700.3 Solanum lycopersicum HOM05D003892 ORTHO05D004522 3.1e-121 439.9 639 43.0
CAN.G388.52 Capsicum annuum HOM05D003892 ORTHO05D004522 4.1e-121 439.5 618 43.7
Dinv25081 Davidia involucrata HOM05D003892 ORTHO05D004522 3.5e-120 436.4 505 52.7
PSO210G1032 Papaver somniferum HOM05D003892 ORTHO05D004522 4.5e-120 436.0 648 44.9
CsaV3_3G038440 Cucumis sativus L. HOM05D003892 ORTHO05D004522 7.7e-120 435.3 637 44.9
PGSC0003DMG400021344 Solanum tuberosum HOM05D003892 ORTHO05D004522 2.9e-119 433.3 644 43.2
PSO832G2838 Papaver somniferum HOM05D003892 ORTHO05D004522 6.6e-119 432.2 648 44.6
Sabra06G0153100 Salix brachista HOM05D003892 ORTHO05D004522 6.6e-119 432.2 641 44.9
SGA_v2.0_scaffold112G31566 Striga asiatica HOM05D003892 ORTHO05D004522 1.9e-118 430.6 613 43.7
ECA233G3816 Erigeron canadensis HOM05D003892 ORTHO05D004522 1.4e-116 424.5 608 44.4
Sed0022528 Sechium edule HOM05D003892 ORTHO05D004522 1.4e-116 424.5 611 46.8
Sabra16G0067100 Salix brachista HOM05D003892 ORTHO05D004522 1.8e-116 424.1 644 43.9
MBI11_g43834_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 6.8e-116 422.2 653 43.6
THA.LOC104824220 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 3.4e-115 419.9 645 44.8
Aa31LG11G3840 Aethionema arabicum HOM05D003892 ORTHO05D004522 7.5e-115 418.7 638 43.1
THA.LOC104825242 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 1.3e-114 417.9 645 44.5
arahy.Tifrunner.gnm1.ann1.P5VIE6 Arachis hypogaea HOM05D003892 ORTHO05D004522 8.3e-114 415.2 628 44.3
SalBow1G7123 Salvia bowleyana HOM05D003892 ORTHO05D004522 5.4e-113 412.5 635 43.1
SalBow1G1519 Salvia bowleyana HOM05D003892 ORTHO05D004522 2.0e-112 410.6 635 42.8
CDE07G1113 Ceratophyllum demersum HOM05D003892 ORTHO05D004522 7.8e-112 408.7 645 43.1
Migut.J00728 Erythranthe guttata HOM05D003892 ORTHO05D004522 2.3e-111 407.1 627 44.0
HPP92_013933 Vanilla planifolia HOM05D003892 ORTHO05D004522 3.3e-110 403.3 655 43.4
FvH4_6g21040 Fragaria vesca HOM05D003892 ORTHO05D004522 5.6e-110 402.5 566 45.9
SGA_v2.0_scaffold31G12827 Striga asiatica HOM05D003892 ORTHO05D004522 1.2e-109 401.4 635 42.7
ECA238G3852 Erigeron canadensis HOM05D003892 ORTHO05D004522 4.0e-108 396.4 605 43.5
Sp5g07700 Schrenkiella parvula HOM05D003892 ORTHO05D004522 4.4e-107 392.9 640 41.1
TWI81G0594 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 9.8e-107 391.7 509 48.3
TAR636G2427 Trochodendron aralioides HOM05D003892 ORTHO05D004522 9.8e-107 391.7 397 53.9
AL5G35820 Arabidopsis lyrata HOM05D003892 ORTHO05D004522 4.9e-106 389.4 641 40.2
Carub.0005s2135 Capsella rubella HOM05D003892 ORTHO05D004522 8.3e-106 388.7 641 41.2
A09p47680 Brassica napus HOM05D003892 ORTHO05D004522 1.9e-105 387.5 640 41.1
BcaB01g00163 Brassica carinata HOM05D003892 ORTHO05D004522 5.4e-105 386.0 667 39.4
BraA09t40224Z Brassica rapa HOM05D003892 ORTHO05D004522 9.2e-105 385.2 641 40.7
ATR0580G241 Amborella trichopoda HOM05D003892 ORTHO05D004522 2.0e-104 384.0 616 44.3
A04p05070 Brassica napus HOM05D003892 ORTHO05D004522 4.6e-104 382.9 631 40.4
Thhalv10010226m.g Eutrema salsugineum HOM05D003892 ORTHO05D004522 4.6e-104 382.9 615 40.2
BcaC07g39789 Brassica carinata HOM05D003892 ORTHO05D004522 7.8e-104 382.1 639 39.7
AT3G54750 Arabidopsis thaliana HOM05D003892 ORTHO05D004522 1.3e-103 381.3 618 40.5
CARHR164690 Cardamine hirsuta HOM05D003892 ORTHO05D004522 1.7e-103 380.9 640 40.3
BolC8t50600H Brassica oleracea HOM05D003892 ORTHO05D004522 3.0e-103 380.2 640 39.5
BraA04t16218Z Brassica rapa HOM05D003892 ORTHO05D004522 3.0e-103 380.2 631 39.9
Nitab4.5_0003430g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 3.0e-103 380.2 644 41.0
Peaxi162Scf00751g00063 Petunia axillaris HOM05D003892 ORTHO05D004522 3.0e-103 380.2 645 40.2
Peaxi162Scf00210g00093 Petunia axillaris HOM05D003892 ORTHO05D004522 1.5e-102 377.9 645 39.8
BcaB02g08458 Brassica carinata HOM05D003892 ORTHO05D004522 5.6e-102 375.9 635 39.1
Aa31LG2G20030 Aethionema arabicum HOM05D003892 ORTHO05D004522 1.6e-101 374.4 523 44.6
C08p29890 Brassica napus HOM05D003892 ORTHO05D004522 1.1e-100 371.7 639 39.4
Zm00001eb032200 Zea mays HOM05D003892 ORTHO05D004522 1.1e-100 371.7 614 40.2
BcaC02g09701 Brassica carinata HOM05D003892 ORTHO05D004522 6.8e-100 369.0 631 39.3
C04p37570 Brassica napus HOM05D003892 ORTHO05D004522 1.2e-99 368.2 631 39.3
Lsat_1_v5_gn_2_121661 Lactuca sativa HOM05D003892 ORTHO05D004522 2.2e-98 364.0 612 43.1
Os12g0621700 Oryza sativa ssp. japonica HOM05D003892 ORTHO05D004522 1.4e-97 361.3 636 38.7
Medtr7g029625 Medicago truncatula HOM05D003892 ORTHO05D004522 3.1e-92 343.6 608 41.0
Gohir.A04G055942 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.5e-91 341.3 324 56.2
Dinv11899 Davidia involucrata HOM05D003892 ORTHO05D004522 9.9e-91 338.6 404 51.0
MBI11_g33439_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 1.9e-86 324.3 332 55.4
Actinidia37779 Actinidia chinensis HOM05D003892 ORTHO05D004522 2.6e-83 313.9 270 58.9
Cpa.g.sc222.13 Carica papaya HOM05D003892 ORTHO05D004522 9.9e-83 312.0 569 39.9
Nitab4.5_0000300g0030 Nicotiana tabacum HOM05D003892 ORTHO05D004522 2.6e-75 287.3 467 42.8
GSVIVG01020969001 Vitis vinifera HOM05D003892 ORTHO05D004522 6.0e-72 276.2 381 46.7
vmacro07513 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 3.0e-71 273.9 394 45.7
CSS0004478 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 1.7e-66 258.1 385 44.7
Sed0005279 Sechium edule HOM05D000521 ORTHO05D004522 4.9e-66 256.5 393 44.5
Pp3c26_8020 Physcomitrium patens HOM05D003892 ORTHO05D004522 4.5e-59 233.4 361 38.8
Pp3c4_31220 Physcomitrium patens HOM05D003892 ORTHO05D004522 4.6e-56 223.4 366 38.3
unitig_26.g9151 Utricularia gibba HOM05D003892 ORTHO05D004522 1.8e-55 221.5 245 49.4
SHI28320 Sapria himalayana HOM05D003892 ORTHO05D004522 3.9e-55 220.3 560 34.6
SMO351G0585 Selaginella moellendorffii HOM05D003892 ORTHO05D004522 3.9e-55 220.3 449 38.5
Cfa017831 Carpinus fangiana HOM05D003892 ORTHO05D004522 2.5e-54 217.6 206 53.9
unitig_749.g14208 Utricularia gibba HOM05D003892 ORTHO05D004522 7.4e-54 216.1 239 50.2
arahy.Tifrunner.gnm1.ann1.75SLRD Arachis hypogaea HOM05D003892 ORTHO05D004522 1.8e-52 211.5 248 52.4
Gohir.D07G211433 Gossypium hirsutum HOM05D003892 ORTHO05D004522 2.0e-51 208.0 406 40.9
Mapoly0011s0047 Marchantia polymorpha HOM05D003892 ORTHO05D004522 5.1e-47 193.4 584 29.5
AagrBONN_evm.TU.Sc2ySwM_228.3493 Anthoceros agrestis HOM05D003892 ORTHO05D004522 3.3e-46 190.7 461 30.8
CSS0016552 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 6.1e-40 169.9 195 50.8
Nitab4.5_0000429g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 1.3e-37 162.2 404 35.1
Gohir.A04G055921 Gossypium hirsutum HOM05D003892 ORTHO05D004522 3.8e-34 150.6 248 45.6
GSVIVG01020973001 Vitis vinifera HOM05D003892 ORTHO05D004522 6.1e-32 143.3 105 63.8
CBR_g20103 Chara braunii HOM05D003892 ORTHO05D004522 2.2e-29 134.8 355 29.9
GSVIVG01020966001 Vitis vinifera HOM05D003892 ORTHO05D004522 2.2e-29 134.8 95 67.4
arahy.Tifrunner.gnm1.ann1.R2HNIM Arachis hypogaea HOM05D003892 ORTHO05D004522 2.0e-27 128.3 258 38.8
vmacro07512 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 2.6e-27 127.9 248 39.1
HPP92_012152 Vanilla planifolia HOM05D003892 ORTHO05D004522 2.1e-24 118.2 129 50.4
Ah.02g116070 Amaranthus hybridus HOM05D003892 ORTHO05D004522 2.0e-22 111.7 92 69.6
TAR636G1189 Trochodendron aralioides HOM05D003892 ORTHO05D004522 5.9e-19 100.1 200 37.5
arahy.Tifrunner.gnm1.ann1.84GXZP Arachis hypogaea HOM05D003892 ORTHO05D004522 8.5e-18 96.3 258 34.1
Nitab4.5_0003430g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 8.5e-18 96.3 213 32.9
arahy.Tifrunner.gnm1.ann1.C1NY7P Arachis hypogaea HOM05D003892 ORTHO05D004522 4.2e-17 94.0 276 33.7
Aqoxy2G02169 Aquilegia oxysepala HOM05D001785 ORTHO05D001933 1.6e-16 92.0 259 35.1
SEGI_30208 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 4.7e-16 90.5 82 57.3
SEGI_25684 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 2.3e-15 88.2 267 33.7
ATR1154G016 Amborella trichopoda HOM05D003892 ORTHO05D004522 1.3e-13 82.4 97 43.3
Cre03.g197600 Chlamydomonas reinhardtii HOM05D003892 ORTHO05D004522 9.1e-12 76.3 314 25.5
Actinidia37778 Actinidia chinensis HOM05D003892 ORTHO05D004522 4.5e-11 73.9 250 30.8
arahy.Tifrunner.gnm1.ann1.Z2YKN3 Arachis hypogaea HOM05D003892 ORTHO05D004522 1.3e-10 72.4 211 33.2
arahy.Tifrunner.gnm1.ann1.U7JCXR Arachis hypogaea HOM05D003892 ORTHO05D004522 5.0e-10 70.5 188 33.5
Sabra17G0067200 Salix brachista HOM05D003892 ORTHO05D004522 1.8e-07 62.0 93 43.0
CSS0023890 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 2.0e-06 58.5 61 45.9
Glyma.10G214400 Glycine max HOM05D003892 ORTHO05D004522 2.0e-06 58.5 100 40.0


User provided reference genes

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