Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.12g059430 Amaranthus hybridus HOM05D006321 ORTHO05D007929 6.4e-90 334.0 157 100.0
AUR62030699 Chenopodium quinoa HOM05D006321 ORTHO05D007929 6.4e-74 280.8 162 80.2
EL10Ac5g11827 Beta vulgaris HOM05D006321 ORTHO05D007929 8.4e-74 280.4 162 80.9
AUR62030694 Chenopodium quinoa HOM05D006321 ORTHO05D007929 1.4e-73 279.6 162 79.6
Sc03g0007150 Simmondsia chinensis HOM05D006321 ORTHO05D007929 4.2e-73 278.1 162 78.4
Dinv25432 Davidia involucrata HOM05D006321 ORTHO05D007929 1.1e-70 270.0 156 78.8
Cc06_g21570 Coffea canephora HOM05D006321 ORTHO05D007929 4.3e-70 268.1 155 79.4
QL02p047686 Quercus lobata HOM05D006321 ORTHO05D007929 7.4e-70 267.3 155 76.1
CSS0046955 Camellia sinensis var. sinensis HOM05D006321 ORTHO05D007929 2.8e-69 265.4 156 77.6
CSS0019729 Camellia sinensis var. sinensis HOM05D006321 ORTHO05D007929 2.4e-68 262.3 156 77.6
CAN.G279.32 Capsicum annuum HOM05D006321 ORTHO05D007929 2.4e-68 262.3 156 76.9
Potri.018G143500 Populus trichocarpa HOM05D006321 ORTHO05D007929 2.4e-68 262.3 156 76.9
Solyc07g008910.3 Solanum lycopersicum HOM05D006321 ORTHO05D007929 3.1e-68 261.9 156 76.9
Nitab4.5_0002365g0010 Nicotiana tabacum HOM05D006321 ORTHO05D007929 4.0e-68 261.5 156 75.6
Sed0024765 Sechium edule HOM05D006321 ORTHO05D007929 4.0e-68 261.5 155 76.1
CiPaw.08G033200 Carya illinoinensis HOM05D006321 ORTHO05D007929 6.9e-68 260.8 156 76.9
CSS0021189 Camellia sinensis var. sinensis HOM05D006321 ORTHO05D007929 9.0e-68 260.4 156 76.9
Glyma.01G110600 Glycine max HOM05D006321 ORTHO05D007929 9.0e-68 260.4 156 75.0
CAN.G547.21 Capsicum annuum HOM05D006321 ORTHO05D007929 1.2e-67 260.0 156 76.3
Duzib251G0486 Durio zibethinus HOM05D006321 ORTHO05D007929 1.2e-67 260.0 156 73.7
Atru.chr7.791 Acer truncatum HOM05D006321 ORTHO05D007929 1.5e-67 259.6 156 76.3
Nitab4.5_0000366g0180 Nicotiana tabacum HOM05D006321 ORTHO05D007929 1.5e-67 259.6 156 75.0
Prupe.1G076700 Prunus persica HOM05D006321 ORTHO05D007929 2.6e-67 258.8 162 72.2
COL.COLO4_27457 Corchorus olitorius HOM05D006321 ORTHO05D007929 7.6e-67 257.3 156 75.0
Rhsim01G0118600 Rhododendron simsii HOM05D006321 ORTHO05D007929 7.6e-67 257.3 156 73.1
Eucgr.C00122 Eucalyptus grandis HOM05D006321 ORTHO05D007929 1.3e-66 256.5 156 73.7
PGSC0003DMG400028738 Solanum tuberosum HOM05D006321 ORTHO05D007929 1.3e-66 256.5 156 74.4
VMungo0540G0928 Vigna mungo HOM05D006321 ORTHO05D007929 2.2e-66 255.8 153 74.5
Glyma.03G076300 Glycine max HOM05D006321 ORTHO05D007929 2.9e-66 255.4 156 74.4
arahy.Tifrunner.gnm1.ann1.CI6UTV Arachis hypogaea HOM05D006321 ORTHO05D007929 4.9e-66 254.6 151 76.2
Thecc.09G184700 Theobroma cacao HOM05D006321 ORTHO05D007929 4.9e-66 254.6 156 75.0
TAR622G0244 Trochodendron aralioides HOM05D006321 ORTHO05D007929 6.5e-66 254.2 155 74.2
arahy.Tifrunner.gnm1.ann1.N3I1N2 Arachis hypogaea HOM05D006321 ORTHO05D007929 8.4e-66 253.8 146 78.8
THA.LOC104817778 Tarenaya hassleriana HOM05D006321 ORTHO05D007929 1.4e-65 253.1 156 72.4
Gohir.A06G171500 Gossypium hirsutum HOM05D006321 ORTHO05D007929 3.2e-65 251.9 160 71.9
Gorai.010G210200 Gossypium raimondii HOM05D006321 ORTHO05D007929 3.2e-65 251.9 160 71.9
Phvul.006G013600 Phaseolus vulgaris HOM05D006321 ORTHO05D007929 4.2e-65 251.5 153 73.9
Ciclev10008911m.g Citrus clementina HOM05D006321 ORTHO05D007929 5.5e-65 251.1 156 73.1
HanXRQChr16g0529271 Helianthus annuus HOM05D006321 ORTHO05D007929 5.5e-65 251.1 156 73.1
TWI60G1509 Tripterygium wilfordii HOM05D006321 ORTHO05D007929 5.5e-65 251.1 156 74.4
Potri.006G076300 Populus trichocarpa HOM05D006321 ORTHO05D007929 7.1e-65 250.8 156 73.1
MBI17_g07973_MAGBIO Magnolia biondii HOM05D006321 ORTHO05D007929 9.3e-65 250.4 156 72.4
GSVIVG01010872001 Vitis vinifera HOM05D006321 ORTHO05D007929 9.3e-65 250.4 156 73.7
Gohir.D06G179600 Gossypium hirsutum HOM05D006321 ORTHO05D007929 1.2e-64 250.0 160 71.2
Lalb_Chr04g0263391 Lupinus albus HOM05D006321 ORTHO05D007929 1.2e-64 250.0 154 73.4
ECA240G2363 Erigeron canadensis HOM05D006321 ORTHO05D007929 2.7e-64 248.8 155 74.2
Lsat_1_v5_gn_7_55681 Lactuca sativa HOM05D006321 ORTHO05D007929 2.7e-64 248.8 156 74.4
PGR142G1933 Punica granatum HOM05D006321 ORTHO05D007929 2.7e-64 248.8 156 74.4
BcaC04g19986 Brassica carinata HOM05D006321 ORTHO05D007929 3.5e-64 248.4 156 70.5
A10p14640 Brassica napus HOM05D006321 ORTHO05D007929 3.5e-64 248.4 156 69.9
BraA10t43551Z Brassica rapa HOM05D006321 ORTHO05D007929 3.5e-64 248.4 156 69.9
Lj6g0010246 Lotus japonicus HOM05D006321 ORTHO05D007929 3.5e-64 248.4 159 72.3
Hund14984 Selenicereus undatus HOM05D006321 ORTHO05D007929 3.5e-64 248.4 215 57.7
MSTRG.10445 Avicennia marina HOM05D006321 ORTHO05D007929 4.6e-64 248.1 156 75.6
Thhalv10014893m.g Eutrema salsugineum HOM05D006321 ORTHO05D007929 4.6e-64 248.1 156 69.9
CARHR271020 Cardamine hirsuta HOM05D006321 ORTHO05D007929 6.0e-64 247.7 156 68.6
MELO3C012967.2 Cucumis melo HOM05D006321 ORTHO05D007929 6.0e-64 247.7 155 72.3
COL.COLO4_07534 Corchorus olitorius HOM05D006321 ORTHO05D007929 7.9e-64 247.3 146 77.4
Ca_14974_v3 Cicer arietinum L. HOM05D006321 ORTHO05D007929 1.0e-63 246.9 156 71.8
RcHm_v2.0_Chr4g0399821 Rosa chinensis HOM05D006321 ORTHO05D007929 1.0e-63 246.9 162 71.6
CANSAT11G0316 Cannabis sativa HOM05D006321 ORTHO05D007929 1.3e-63 246.5 156 70.5
Carub.0008s1773 Capsella rubella HOM05D006321 ORTHO05D007929 1.3e-63 246.5 156 69.2
Manes.02G106300 Manihot esculenta HOM05D006321 ORTHO05D007929 1.3e-63 246.5 156 71.8
Aqoxy3G01064 Aquilegia oxysepala HOM05D006321 ORTHO05D007929 1.8e-63 246.1 156 72.4
AL8G33200 Arabidopsis lyrata HOM05D006321 ORTHO05D007929 1.8e-63 246.1 156 68.6
FvH4_4g07380 Fragaria vesca HOM05D006321 ORTHO05D007929 1.8e-63 246.1 158 73.4
FAN12G2844 Fragaria x ananassa HOM05D006321 ORTHO05D007929 1.8e-63 246.1 158 73.4
FAN22G1279 Fragaria x ananassa HOM05D006321 ORTHO05D007929 1.8e-63 246.1 158 73.4
Medtr3g465100 Medicago truncatula HOM05D006321 ORTHO05D007929 1.8e-63 246.1 156 71.2
Sp6g18970 Schrenkiella parvula HOM05D006321 ORTHO05D007929 1.8e-63 246.1 156 69.2
Phvul.003G138800 Phaseolus vulgaris HOM05D006321 ORTHO05D007929 2.3e-63 245.7 153 71.9
Phvul.003G139178 Phaseolus vulgaris HOM05D006321 ORTHO05D007929 2.3e-63 245.7 153 71.9
Psat4g027120 Pisum sativum HOM05D006321 ORTHO05D007929 2.3e-63 245.7 162 67.9
CsaV3_3G025050 Cucumis sativus L. HOM05D006321 ORTHO05D007929 3.0e-63 245.4 155 71.6
FAN07G2214 Fragaria x ananassa HOM05D006321 ORTHO05D007929 3.0e-63 245.4 153 74.5
BcaB08g36085 Brassica carinata HOM05D006321 ORTHO05D007929 3.9e-63 245.0 156 69.2
Psat2g182520 Pisum sativum HOM05D006321 ORTHO05D004512 3.9e-63 245.0 156 69.9
ECA234G0872 Erigeron canadensis HOM05D006321 ORTHO05D007929 5.1e-63 244.6 155 72.9
HanXRQChr03g0068421 Helianthus annuus HOM05D006321 ORTHO05D007929 5.1e-63 244.6 153 72.5
AT5G57230 Arabidopsis thaliana HOM05D006321 ORTHO05D007929 8.7e-63 243.8 156 67.9
HPP92_002000 Vanilla planifolia HOM05D006321 ORTHO05D007929 8.7e-63 243.8 153 73.2
SGA_v2.0_scaffold21G09650 Striga asiatica HOM05D006321 ORTHO05D007929 2.5e-62 242.3 160 70.0
Aa31LG3G13120 Aethionema arabicum HOM05D006321 ORTHO05D007929 4.3e-62 241.5 156 68.6
PSO339G6079 Papaver somniferum HOM05D006321 ORTHO05D007929 5.7e-62 241.1 156 68.6
C09p49090 Brassica napus HOM05D006321 ORTHO05D007929 9.7e-62 240.4 164 67.1
BolC9t57758H Brassica oleracea HOM05D006321 ORTHO05D007929 9.7e-62 240.4 164 67.1
Migut.L01889 Erythranthe guttata HOM05D006321 ORTHO05D007929 1.6e-61 239.6 156 71.8
TPR.G32885 Trifolium pratense HOM05D006321 ORTHO05D007929 2.8e-61 238.8 156 69.9
AUR62036340 Chenopodium quinoa HOM05D006321 ORTHO05D007929 1.1e-60 236.9 136 81.6
Os06g0482200 Oryza sativa ssp. japonica HOM05D006321 ORTHO05D007929 4.1e-60 235.0 153 70.6
PSO384G3851 Papaver somniferum HOM05D006321 ORTHO05D007929 4.1e-60 235.0 156 66.7
Os10g0162834 Oryza sativa ssp. japonica HOM05D006321 ORTHO05D007929 5.9e-59 231.1 153 69.9
MD16G1249800 Malus domestica HOM05D006321 ORTHO05D007929 1.0e-58 230.3 147 72.1
Actinidia01283 Actinidia chinensis HOM05D006321 ORTHO05D007929 2.2e-58 229.2 156 69.9
Cpa.g.sc95.16 Carica papaya HOM05D006321 ORTHO05D007929 2.9e-58 228.8 151 68.9
CDE06G2300 Ceratophyllum demersum HOM05D006321 ORTHO05D007929 1.4e-57 226.5 138 75.4
Zm00001eb161640 Zea mays HOM05D006321 ORTHO05D007929 1.4e-57 226.5 144 72.9
Sopen07g004840 Solanum pennellii HOM05D003168 ORTHO05D003590 7.2e-57 224.2 136 75.0
unitig_736.g22252 Utricularia gibba HOM05D006321 ORTHO05D007929 2.7e-56 222.2 142 73.2
Nn2g12444 Nelumbo nucifera HOM05D006321 ORTHO05D007929 1.9e-54 216.1 138 71.0
SEGI_34333 Sequoiadendron giganteum HOM05D006321 ORTHO05D007929 4.3e-54 214.9 156 64.7
MD13G1243200 Malus domestica HOM05D006321 ORTHO05D007929 4.8e-53 211.5 139 69.8
Haze_22010 Corylus avellana HOM05D006321 ORTHO05D007929 1.8e-52 209.5 153 64.1
Sabra18G0117000 Salix brachista HOM05D003168 ORTHO05D003525 9.1e-52 207.2 118 80.5
Psat5g235880 Pisum sativum HOM05D006321 ORTHO05D007929 1.4e-49 199.9 122 73.8
Sabra06G0057200 Salix brachista HOM05D006321 ORTHO05D007929 2.1e-48 196.1 189 51.9
Migut.G01073 Erythranthe guttata HOM05D006321 ORTHO05D007929 3.0e-47 192.2 117 77.8
vmacro20823 Vaccinium macrocarpon HOM05D006321 ORTHO05D007929 8.8e-47 190.7 116 71.6
Oeu044678.1 Olea europaea HOM05D006321 ORTHO05D007929 2.6e-46 189.1 114 74.6
Oeu030095.1 Olea europaea HOM05D006321 ORTHO05D007929 4.8e-45 184.9 114 74.6
Pp3c22_13020 Physcomitrium patens HOM05D006321 ORTHO05D007929 9.1e-44 180.6 147 54.4
FAN17G2672 Fragaria x ananassa HOM05D006321 ORTHO05D007929 2.0e-43 179.5 150 58.7
Mapoly0003s0233 Marchantia polymorpha HOM05D006321 ORTHO05D007929 2.0e-43 179.5 141 57.4
Mapoly0003s0169 Marchantia polymorpha HOM05D006321 ORTHO05D007929 1.4e-41 173.3 141 56.0
ATR1152G025 Amborella trichopoda HOM05D006321 ORTHO05D007929 9.4e-41 170.6 96 78.1
PSO541G2755 Papaver somniferum HOM05D006321 ORTHO05D007929 3.6e-40 168.7 115 63.5
Lj6A87G16 Lonicera japonica HOM05D006321 ORTHO05D007929 4.7e-40 168.3 95 78.9
Peaxi162Scf00324g00017 Petunia axillaris HOM05D006321 ORTHO05D007929 1.4e-39 166.8 100 76.0
DCAR_005801 Daucus carota HOM05D006321 ORTHO05D007929 2.0e-38 162.9 100 70.0
Aqoxy108s003 Aquilegia oxysepala HOM05D006321 ORTHO05D007929 2.8e-37 159.1 127 60.6
Dinv41168 Davidia involucrata HOM05D000015 ORTHO05D003525 7.2e-33 144.4 82 76.8
BcaB05g22329 Brassica carinata HOM05D006321 ORTHO05D007929 1.2e-32 143.7 151 48.3
COL.COLO4_32845 Corchorus olitorius HOM05D006321 ORTHO05D007929 1.0e-31 140.6 82 75.6
TAR629G2308 Trochodendron aralioides HOM05D006321 ORTHO05D007929 1.8e-31 139.8 131 55.0
CBR_g19745 Chara braunii HOM05D006321 ORTHO05D007929 4.0e-31 138.7 132 53.0
Lj6A100T20 Lonicera japonica HOM05D006321 ORTHO05D007929 2.7e-24 115.9 63 79.4
Sopen00g012850 Solanum pennellii HOM05D006321 ORTHO05D007929 2.3e-18 96.3 56 78.6
BolC2t07570H Brassica oleracea HOM05D006321 ORTHO05D007929 1.3e-10 70.5 55 56.4


User provided reference genes

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