Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.12g058680 Amaranthus hybridus HOM05D004421 ORTHO05D005227 5.6e-53 210.7 108 100.0
AUR62030497 Chenopodium quinoa HOM05D004421 ORTHO05D005227 2.5e-45 185.3 109 88.1
AUR62030797 Chenopodium quinoa HOM05D004421 ORTHO05D005227 4.3e-45 184.5 109 87.2
EL10Ac5g12553 Beta vulgaris HOM05D004421 ORTHO05D005227 1.3e-44 183.0 108 87.0
HanXRQChr04g0126911 Helianthus annuus HOM05D004421 ORTHO05D005227 2.6e-42 175.3 104 83.7
Hma1.2p1_0445F.1_g154450 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 3.4e-42 174.9 107 81.3
Lsat_1_v5_gn_7_92700 Lactuca sativa HOM05D004421 ORTHO05D005227 5.8e-42 174.1 107 81.3
CsaV3_2G034620 Cucumis sativus L. HOM05D004421 ORTHO05D005227 7.6e-42 173.7 107 80.4
TWI36G1565 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 7.6e-42 173.7 107 81.3
Prupe.3G211700 Prunus persica HOM05D004421 ORTHO05D005227 1.7e-41 172.6 108 81.5
TWI79G1637 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 6.5e-41 170.6 107 80.4
Thecc.07G030200 Theobroma cacao HOM05D004421 ORTHO05D005227 8.4e-41 170.2 107 79.4
ClCG02G009100 Citrullus lanatus HOM05D004421 ORTHO05D005227 1.1e-40 169.9 102 83.3
Manes.13G067100 Manihot esculenta HOM05D004421 ORTHO05D005227 1.1e-40 169.9 108 79.6
Potri.002G225600 Populus trichocarpa HOM05D004421 ORTHO05D005227 1.4e-40 169.5 106 79.2
Gorai.005G241500 Gossypium raimondii HOM05D004421 ORTHO05D005227 1.9e-40 169.1 107 79.4
Psat4g220560 Pisum sativum HOM05D004421 ORTHO05D005227 1.9e-40 169.1 103 81.6
MSTRG.14457 Avicennia marina HOM05D004421 ORTHO05D005227 2.5e-40 168.7 107 78.5
LjContig00564g0020145 Lotus japonicus HOM05D004421 ORTHO05D005227 2.5e-40 168.7 104 80.8
LjContig00564g0024160 Lotus japonicus HOM05D004421 ORTHO05D005227 2.5e-40 168.7 104 80.8
Hund24697 Selenicereus undatus HOM05D004421 ORTHO05D005227 2.5e-40 168.7 101 84.2
COL.COLO4_09709 Corchorus olitorius HOM05D004421 ORTHO05D005227 3.2e-40 168.3 107 78.5
Duzib128G1691 Durio zibethinus HOM05D004421 ORTHO05D005227 3.2e-40 168.3 107 79.4
Cfa014325 Carpinus fangiana HOM05D004421 ORTHO05D005227 4.2e-40 167.9 108 77.8
Oeu013122.1 Olea europaea HOM05D004421 ORTHO05D005227 4.2e-40 167.9 107 78.5
Medtr8g016300 Medicago truncatula HOM05D004421 ORTHO05D005227 5.5e-40 167.5 101 83.2
LjContig00564g0000485 Lotus japonicus HOM05D004421 ORTHO05D005227 7.1e-40 167.2 104 79.8
LjContig00564g0024311 Lotus japonicus HOM05D004421 ORTHO05D005227 7.1e-40 167.2 104 79.8
SalBow3G0779 Salvia bowleyana HOM05D004421 ORTHO05D005227 7.1e-40 167.2 107 78.5
vmacro09354 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 7.1e-40 167.2 106 77.4
Hma1.2p1_0177F.1_g077900 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 9.3e-40 166.8 107 75.7
Hma1.2p1_0177F.1_g077905 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 9.3e-40 166.8 107 75.7
Sed0012667 Sechium edule HOM05D004421 ORTHO05D005227 9.3e-40 166.8 106 78.3
CSS0000360 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 1.2e-39 166.4 107 77.6
Cpa.g.sc12.255 Carica papaya HOM05D004421 ORTHO05D005227 1.2e-39 166.4 106 78.3
Gohir.A03G192600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 1.2e-39 166.4 107 78.5
Medtr8g099150 Medicago truncatula HOM05D004421 ORTHO05D005227 1.2e-39 166.4 101 82.2
Nitab4.5_0005588g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.2e-39 166.4 106 79.2
Peaxi162Scf00047g00850 Petunia axillaris HOM05D004421 ORTHO05D005227 1.2e-39 166.4 106 80.2
Potri.014G157400 Populus trichocarpa HOM05D004421 ORTHO05D005227 1.2e-39 166.4 108 77.8
QL10p065608 Quercus lobata HOM05D004421 ORTHO05D005227 1.2e-39 166.4 107 76.6
Rhsim04G0051300 Rhododendron simsii HOM05D004421 ORTHO05D005227 1.2e-39 166.4 107 79.4
Eucgr.B01010 Eucalyptus grandis HOM05D004421 ORTHO05D005227 1.6e-39 166.0 106 77.4
Sabra02G0172700 Salix brachista HOM05D004421 ORTHO05D005227 1.6e-39 166.0 106 77.4
Atru.chr2.3508 Acer truncatum HOM05D004421 ORTHO05D005227 2.1e-39 165.6 108 75.9
CANSAT64G1364 Cannabis sativa HOM05D004421 ORTHO05D005227 2.1e-39 165.6 100 82.0
CSS0029217 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 2.7e-39 165.2 107 76.6
PGR042G0750 Punica granatum HOM05D004421 ORTHO05D005227 2.7e-39 165.2 108 79.6
QL08p031014 Quercus lobata HOM05D004421 ORTHO05D005227 2.7e-39 165.2 107 76.6
GSVIVG01036899001 Vitis vinifera HOM05D004421 ORTHO05D005227 2.7e-39 165.2 109 78.9
CAN.G149.31 Capsicum annuum HOM05D004421 ORTHO05D005227 3.5e-39 164.9 106 79.2
ECA236G3405 Erigeron canadensis HOM05D004421 ORTHO05D005227 3.5e-39 164.9 108 77.8
Oeu054302.1 Olea europaea HOM05D004421 ORTHO05D005227 3.5e-39 164.9 107 76.6
Glyma.14G047100 Glycine max HOM05D004421 ORTHO05D005227 4.6e-39 164.5 106 76.4
Phvul.008G212200 Phaseolus vulgaris HOM05D004421 ORTHO05D005227 4.6e-39 164.5 106 76.4
QL10p065434 Quercus lobata HOM05D004421 ORTHO05D005227 4.6e-39 164.5 107 75.7
TPR.G7933 Trifolium pratense HOM05D004421 ORTHO05D005227 4.6e-39 164.5 103 79.6
TAR629G1061 Trochodendron aralioides HOM05D004421 ORTHO05D005227 4.6e-39 164.5 109 79.8
FAN02G1632 Fragaria x ananassa HOM05D004421 ORTHO05D005227 6.0e-39 164.1 107 76.6
Rhsim06G0166700 Rhododendron simsii HOM05D004421 ORTHO05D005227 6.0e-39 164.1 107 76.6
SGA_v2.0_scaffold392G50685 Striga asiatica HOM05D004421 ORTHO05D005227 6.0e-39 164.1 107 77.6
Ciclev10009985m.g Citrus clementina HOM05D004421 ORTHO05D005227 7.9e-39 163.7 108 77.8
FvH4_6g42460 Fragaria vesca HOM05D004421 ORTHO05D005227 7.9e-39 163.7 107 76.6
FAN05G5559 Fragaria x ananassa HOM05D004421 ORTHO05D005227 7.9e-39 163.7 107 76.6
FAN09G1846 Fragaria x ananassa HOM05D004421 ORTHO05D005227 7.9e-39 163.7 107 76.6
FAN14G1774 Fragaria x ananassa HOM05D004421 ORTHO05D005227 7.9e-39 163.7 107 76.6
RcHm_v2.0_Chr2g0158361 Rosa chinensis HOM05D004421 ORTHO05D005227 7.9e-39 163.7 107 76.6
VMungo0647G1664 Vigna mungo HOM05D004421 ORTHO05D005227 7.9e-39 163.7 106 76.4
CAN.G358.76 Capsicum annuum HOM05D004421 ORTHO05D005227 1.0e-38 163.3 106 78.3
Cc05_g02530 Coffea canephora HOM05D004421 ORTHO05D005227 1.0e-38 163.3 107 76.6
Gohir.D02G213600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 1.0e-38 163.3 107 77.6
arahy.Tifrunner.gnm1.ann1.J4LN0V Arachis hypogaea HOM05D004421 ORTHO05D005227 1.3e-38 162.9 107 74.8
CiPaw.08G089000 Carya illinoinensis HOM05D004421 ORTHO05D005227 1.3e-38 162.9 103 79.6
Haze_12777 Corylus avellana HOM05D004421 ORTHO05D005227 1.3e-38 162.9 107 76.6
Sc12g0002130 Simmondsia chinensis HOM05D004421 ORTHO05D005227 1.3e-38 162.9 108 76.9
arahy.Tifrunner.gnm1.ann1.BKRM87 Arachis hypogaea HOM05D004421 ORTHO05D005227 1.8e-38 162.5 107 74.8
MSTRG.12990 Avicennia marina HOM05D004421 ORTHO05D005227 1.8e-38 162.5 107 76.6
Lsat_1_v5_gn_5_123820 Lactuca sativa HOM05D004421 ORTHO05D005227 1.8e-38 162.5 99 80.8
Lalb_Chr10g0105671 Lupinus albus HOM05D004421 ORTHO05D005227 1.8e-38 162.5 107 76.6
DCAR_019262 Daucus carota HOM05D004421 ORTHO05D005227 2.3e-38 162.2 107 76.6
TPR.G1800 Trifolium pratense HOM05D004421 ORTHO05D005227 2.3e-38 162.2 103 77.7
CiPaw.03G156500 Carya illinoinensis HOM05D004421 ORTHO05D005227 3.0e-38 161.8 103 77.7
Nitab4.5_0000138g0020 Nicotiana tabacum HOM05D004421 ORTHO05D005227 3.0e-38 161.8 106 77.4
Nitab4.5_0007533g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 3.0e-38 161.8 106 78.3
Peaxi162Scf00149g00049 Petunia axillaris HOM05D004421 ORTHO05D005227 5.1e-38 161.0 106 78.3
Cc05_g14180 Coffea canephora HOM05D004421 ORTHO05D005227 6.7e-38 160.6 106 76.4
MELO3C019309.2 Cucumis melo HOM05D004421 ORTHO05D005227 6.7e-38 160.6 99 80.8
ECA234G2260 Erigeron canadensis HOM05D004421 ORTHO05D005227 6.7e-38 160.6 99 82.8
PGSC0003DMG400010437 Solanum tuberosum HOM05D004421 ORTHO05D005227 8.7e-38 160.2 106 77.4
Ca_23316_v3 Cicer arietinum L. HOM05D004421 ORTHO05D005227 1.1e-37 159.8 103 76.7
Glyma.02G269800 Glycine max HOM05D004421 ORTHO05D005227 1.1e-37 159.8 106 74.5
SGA_v2.0_scaffold363G49953 Striga asiatica HOM05D004421 ORTHO05D005227 1.5e-37 159.5 107 76.6
SHI33915 Sapria himalayana HOM05D004421 ORTHO05D005227 2.5e-37 158.7 108 75.0
CAN.G358.77 Capsicum annuum HOM05D004421 ORTHO05D005227 3.3e-37 158.3 106 76.4
Nitab4.5_0001288g0200 Nicotiana tabacum HOM05D004421 ORTHO05D005227 5.7e-37 157.5 106 76.4
Sopen02g017940 Solanum pennellii HOM05D004421 ORTHO05D005227 5.7e-37 157.5 103 78.6
DCAR_012923 Daucus carota HOM05D004421 ORTHO05D005227 7.4e-37 157.1 107 73.8
PSO017G4413 Papaver somniferum HOM05D004421 ORTHO05D005227 7.4e-37 157.1 107 72.9
PSO675G5827 Papaver somniferum HOM05D004421 ORTHO05D005227 7.4e-37 157.1 107 72.9
Solyc02g068770.4 Solanum lycopersicum HOM05D004421 ORTHO05D005227 1.3e-36 156.4 103 77.7
Aqoxy7G01112 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 1.6e-36 156.0 102 77.5
CDE04G3645 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 1.6e-36 156.0 98 80.6
THA.LOC104811627 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 1.6e-36 156.0 106 72.6
unitig_748.g8294 Utricularia gibba HOM05D004421 ORTHO05D005227 2.8e-36 155.2 98 78.6
SGA_v2.0_scaffold159G37698 Striga asiatica HOM05D004421 ORTHO05D005227 1.1e-35 153.3 98 78.6
unitig_32.g10858 Utricularia gibba HOM05D004421 ORTHO05D005227 1.1e-35 153.3 98 78.6
Thhalv10015072m.g Eutrema salsugineum HOM05D004421 ORTHO05D005227 1.4e-35 152.9 107 73.8
CDE06G2669 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 1.8e-35 152.5 98 78.6
Aqoxy6G00590 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 2.4e-35 152.1 107 71.0
Aa31LG3G11160 Aethionema arabicum HOM05D004421 ORTHO05D005227 4.1e-35 151.4 107 71.0
BcaB05g22185 Brassica carinata HOM05D004421 ORTHO05D005227 5.3e-35 151.0 107 72.0
BraA02t06048Z Brassica rapa HOM05D004421 ORTHO05D005227 9.0e-35 150.2 107 69.2
CARHR268500 Cardamine hirsuta HOM05D004421 ORTHO05D005227 1.5e-34 149.4 107 71.0
BcaC04g20265 Brassica carinata HOM05D004421 ORTHO05D005227 2.6e-34 148.7 107 71.0
A02p09830 Brassica napus HOM05D004421 ORTHO05D005227 2.6e-34 148.7 107 68.2
BraA10t43337Z Brassica rapa HOM05D004421 ORTHO05D005227 2.6e-34 148.7 107 71.0
Carub.0008s1546 Capsella rubella HOM05D004421 ORTHO05D005227 3.4e-34 148.3 107 69.2
BolC2t07739H Brassica oleracea HOM05D004421 ORTHO05D005227 4.5e-34 147.9 107 71.0
ATR0665G259 Amborella trichopoda HOM05D004421 ORTHO05D005227 5.9e-34 147.5 98 75.5
Sp6g17090 Schrenkiella parvula HOM05D004421 ORTHO05D005227 5.9e-34 147.5 107 70.1
BcaB08g35879 Brassica carinata HOM05D004421 ORTHO05D005227 7.6e-34 147.1 105 70.5
AT5G55140 Arabidopsis thaliana HOM05D004421 ORTHO05D005227 1.0e-33 146.7 107 69.2
C02p16370 Brassica napus HOM05D004421 ORTHO05D005227 1.0e-33 146.7 107 70.1
AL8G30670 Arabidopsis lyrata HOM05D004421 ORTHO05D005227 1.3e-33 146.4 107 68.2
MBI16_g23852_MAGBIO Magnolia biondii HOM05D004421 ORTHO05D005227 2.2e-33 145.6 110 68.2
A05p12050 Brassica napus HOM05D004421 ORTHO05D005227 6.5e-33 144.1 108 70.4
A10p12420 Brassica napus HOM05D004421 ORTHO05D005227 6.5e-33 144.1 108 70.4
C09p45840 Brassica napus HOM05D004421 ORTHO05D005227 6.5e-33 144.1 108 70.4
BolC9t57441H Brassica oleracea HOM05D004421 ORTHO05D005227 6.5e-33 144.1 108 70.4
THA.LOC104813431 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 6.5e-33 144.1 98 73.5
Eucgr.B01013 Eucalyptus grandis HOM05D004421 ORTHO05D005227 8.5e-33 143.7 95 76.8
CSS0048822 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 1.0e-30 136.7 107 67.3
HPP92_026149 Vanilla planifolia HOM05D004421 ORTHO05D005227 1.4e-30 136.3 99 65.7
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 8.8e-30 133.7 86 77.9
Zm00001eb211500 Zea mays HOM05D004421 ORTHO05D005227 1.1e-29 133.3 99 67.7
Os08g0110100 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 1.3e-28 129.8 102 64.7
vmacro12170 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 2.2e-28 129.0 95 72.6
SEGI_06591 Sequoiadendron giganteum HOM05D004421 ORTHO05D005227 6.9e-27 124.0 98 63.3
BcaC03g14260 Brassica carinata HOM05D004421 ORTHO05D005227 7.7e-26 120.6 81 72.8
Lj2g0010759 Lotus japonicus HOM05D004421 ORTHO05D005227 1.4e-24 116.3 108 61.1
BraA03t14310Z Brassica rapa HOM05D004421 ORTHO05D005227 1.9e-24 115.9 96 64.6
A08p21130 Brassica napus HOM05D004421 ORTHO05D005227 4.2e-24 114.8 96 64.6
BcaC03g14258 Brassica carinata HOM05D004421 ORTHO05D005227 1.8e-22 109.4 80 71.2
Hma1.2p1_2381F.1_g321010 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 2.3e-22 109.0 85 65.9
Dinv22240 Davidia involucrata HOM05D004421 ORTHO05D005227 8.8e-22 107.1 66 80.3
Mapoly0058s0042 Marchantia polymorpha HOM05D004421 ORTHO05D005227 9.7e-21 103.6 93 58.1
Os06g0339800 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 1.7e-20 102.8 97 57.7
AagrBONN_evm.TU.Sc2ySwM_344.5034 Anthoceros agrestis HOM05D004421 ORTHO05D005227 2.2e-20 102.4 92 57.6
FvH4_6g04610 Fragaria vesca HOM05D004421 ORTHO05D005227 5.3e-19 97.8 75 72.0
Eucgr.B01894 Eucalyptus grandis HOM05D004421 ORTHO05D005227 9.1e-19 97.1 65 73.8
HanXRQChr16g0506671 Helianthus annuus HOM05D004421 ORTHO05D005227 8.5e-17 90.5 54 83.3
MD09G1112900 Malus domestica HOM05D004421 ORTHO05D005227 2.5e-16 89.0 55 81.8
Pp3c26_2200 Physcomitrium patens HOM05D004421 ORTHO05D005227 4.2e-16 88.2 87 52.9
Migut.H01800 Erythranthe guttata HOM05D004421 ORTHO05D005227 1.2e-15 86.7 56 75.0
GSVIVG01030492001 Vitis vinifera HOM05D004421 ORTHO05D005227 1.0e-14 83.6 56 78.6
Potri.010G076275 Populus trichocarpa HOM05D004421 ORTHO05D005227 1.8e-14 82.8 75 60.0
Manes.12G070801 Manihot esculenta HOM05D004421 ORTHO05D005227 3.0e-14 82.0 53 75.5
SMO172G0081 Selaginella moellendorffii HOM05D004421 ORTHO05D005227 2.8e-12 75.5 86 48.8
RcHm_v2.0_Chr4g0419171 Rosa chinensis HOM05D004421 ORTHO05D005227 3.7e-12 75.1 107 44.9
Nn2g15167 Nelumbo nucifera HOM05D004421 ORTHO05D005227 5.9e-10 67.8 44 75.0
Cre05.g234659 Chlamydomonas reinhardtii HOM05D004421 ORTHO05D005227 1.5e-08 63.2 91 42.9


User provided reference genes

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