Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.12g058670 Amaranthus hybridus HOM05D006312 ORTHO05D007843 6.3e-85 317.4 159 100.0
EL10Ac2g02752 Beta vulgaris HOM05D006312 ORTHO05D007843 1.9e-57 226.1 156 75.0
AUR62032612 Chenopodium quinoa HOM05D006312 ORTHO05D007843 1.9e-49 199.5 154 70.1
AUR62031725 Chenopodium quinoa HOM05D006312 ORTHO05D007843 5.6e-49 198.0 154 69.5
Hund13396 Selenicereus undatus HOM05D006312 ORTHO05D007843 1.6e-48 196.4 164 62.8
COL.COLO4_27421 Corchorus olitorius HOM05D006312 ORTHO05D007843 9.5e-41 170.6 166 55.4
Thecc.05G202100 Theobroma cacao HOM05D006312 ORTHO05D007843 4.0e-39 165.2 165 55.2
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 3.4e-38 162.2 110 75.5
Ciclev10012864m.g Citrus clementina HOM05D006312 ORTHO05D007843 3.4e-38 162.2 95 82.1
MD15G1226900 Malus domestica HOM05D006312 ORTHO05D007843 1.3e-37 160.2 96 78.1
Potri.001G455900 Populus trichocarpa HOM05D006312 ORTHO05D007843 1.3e-37 160.2 95 81.1
Aqoxy6G03048 Aquilegia oxysepala HOM05D006312 ORTHO05D007843 1.7e-37 159.8 134 63.4
Eucgr.J02573 Eucalyptus grandis HOM05D006312 ORTHO05D007843 2.2e-37 159.5 115 68.7
Gorai.013G007100 Gossypium raimondii HOM05D006312 ORTHO05D007843 2.2e-37 159.5 157 54.1
Gohir.A13G006700 Gossypium hirsutum HOM05D006312 ORTHO05D007843 3.7e-37 158.7 95 80.0
Sabra16G0308500 Salix brachista HOM05D006312 ORTHO05D007843 3.7e-37 158.7 95 80.0
MBI04_g11525_MAGBIO Magnolia biondii HOM05D006312 ORTHO05D007843 6.4e-37 157.9 156 56.4
RcHm_v2.0_Chr2g0096661 Rosa chinensis HOM05D006312 ORTHO05D007843 8.3e-37 157.5 95 77.9
Sc10g0004590 Simmondsia chinensis HOM05D006312 ORTHO05D007843 8.3e-37 157.5 165 55.8
Gohir.D13G006900 Gossypium hirsutum HOM05D006312 ORTHO05D007843 1.1e-36 157.1 95 78.9
Sed0011609 Sechium edule HOM05D006312 ORTHO05D007843 1.4e-36 156.8 95 76.8
MD02G1107600 Malus domestica HOM05D006312 ORTHO05D007843 1.9e-36 156.4 95 75.8
ATR0605G230 Amborella trichopoda HOM05D006312 ORTHO05D007843 2.4e-36 156.0 95 74.7
Nn6g34643 Nelumbo nucifera HOM05D006312 ORTHO05D007843 2.4e-36 156.0 95 75.8
TAR376G0343 Trochodendron aralioides HOM05D006312 ORTHO05D007843 2.4e-36 156.0 96 76.0
Atru.chr2.1887 Acer truncatum HOM05D006312 ORTHO05D007843 3.2e-36 155.6 161 56.5
Lsat_1_v5_gn_3_68340 Lactuca sativa HOM05D006312 ORTHO05D007843 9.2e-36 154.1 120 63.3
VMungo1383G0261 Vigna mungo HOM05D006312 ORTHO05D007843 9.2e-36 154.1 110 69.1
Manes.02G117611 Manihot esculenta HOM05D006312 ORTHO05D007843 2.1e-35 152.9 97 77.3
PGR102G2008 Punica granatum HOM05D006312 ORTHO05D007843 2.1e-35 152.9 96 76.0
Cpa.g.sc178.37 Carica papaya HOM05D006312 ORTHO05D007843 2.7e-35 152.5 95 74.7
Prupe.7G188400 Prunus persica HOM05D006312 ORTHO05D007843 3.5e-35 152.1 95 73.7
arahy.Tifrunner.gnm1.ann1.YWP2KZ Arachis hypogaea HOM05D006312 ORTHO05D007843 4.6e-35 151.8 146 54.8
A01p23400 Brassica napus HOM05D006312 ORTHO05D007843 4.6e-35 151.8 94 77.7
BraA01t02247Z Brassica rapa HOM05D006312 ORTHO05D007843 4.6e-35 151.8 94 77.7
CSS0026635 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 4.6e-35 151.8 110 66.4
CARHR161090 Cardamine hirsuta HOM05D006312 ORTHO05D007843 6.0e-35 151.4 94 75.5
BcaNung00380 Brassica carinata HOM05D006312 ORTHO05D007843 7.8e-35 151.0 94 76.6
CSS0005301 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 7.8e-35 151.0 109 67.0
Sp5g10730 Schrenkiella parvula HOM05D006312 ORTHO05D007843 7.8e-35 151.0 129 60.5
AL5G31950 Arabidopsis lyrata HOM05D006312 ORTHO05D007843 1.0e-34 150.6 94 76.6
BcaB01g00508 Brassica carinata HOM05D006312 ORTHO05D007843 1.0e-34 150.6 145 54.5
MELO3C007014.2 Cucumis melo HOM05D006312 ORTHO05D007843 1.3e-34 150.2 95 74.7
C01p29030 Brassica napus HOM05D006312 ORTHO05D007843 1.7e-34 149.8 94 76.6
BolC1t02835H Brassica oleracea HOM05D006312 ORTHO05D007843 1.7e-34 149.8 94 76.6
Carub.0005s1789 Capsella rubella HOM05D006312 ORTHO05D007843 1.7e-34 149.8 94 76.6
CsaV3_6G052950 Cucumis sativus L. HOM05D006312 ORTHO05D007843 1.7e-34 149.8 95 74.7
vmacro18480 Vaccinium macrocarpon HOM05D006312 ORTHO05D007843 1.7e-34 149.8 93 76.3
Ca_08638_v3 Cicer arietinum L. HOM05D006312 ORTHO05D007843 2.3e-34 149.4 97 75.3
Thhalv10010756m.g Eutrema salsugineum HOM05D006312 ORTHO05D007843 2.3e-34 149.4 94 75.5
CANSAT21G2119 Cannabis sativa HOM05D006312 ORTHO05D007843 3.0e-34 149.1 166 51.8
AT3G51510 Arabidopsis thaliana HOM05D006312 ORTHO05D007843 5.1e-34 148.3 94 74.5
TPR.G19116 Trifolium pratense HOM05D006312 ORTHO05D007843 5.1e-34 148.3 95 73.7
BraA09t39926Z Brassica rapa HOM05D006312 ORTHO05D007843 6.6e-34 147.9 95 76.8
Glyma.03G158200 Glycine max HOM05D006312 ORTHO05D007843 6.6e-34 147.9 96 74.0
Phvul.001G155800 Phaseolus vulgaris HOM05D006312 ORTHO05D007843 6.6e-34 147.9 95 73.7
Potri.011G146200 Populus trichocarpa HOM05D006312 ORTHO05D007843 6.6e-34 147.9 88 77.3
Lj1g0018795 Lotus japonicus HOM05D006312 ORTHO05D007843 8.6e-34 147.5 134 59.0
arahy.Tifrunner.gnm1.ann1.Y34PHS Arachis hypogaea HOM05D006312 ORTHO05D007843 1.1e-33 147.1 96 74.0
Haze_03648 Corylus avellana HOM05D006312 ORTHO05D007843 1.1e-33 147.1 92 72.8
THA.LOC104815359 Tarenaya hassleriana HOM05D006312 ORTHO05D007843 1.9e-33 146.4 112 63.4
C08p26760 Brassica napus HOM05D006312 ORTHO05D007843 2.5e-33 146.0 96 75.0
BolC8t50289H Brassica oleracea HOM05D006312 ORTHO05D007843 2.5e-33 146.0 96 75.0
Cfa007119 Carpinus fangiana HOM05D006312 ORTHO05D007843 3.3e-33 145.6 145 52.4
ClCG01G025710 Citrullus lanatus HOM05D006312 ORTHO05D007843 3.3e-33 145.6 106 67.9
Lj2A507T48 Lonicera japonica HOM05D006312 ORTHO05D007843 3.3e-33 145.6 95 70.5
Glyma.19G160500 Glycine max HOM05D006312 ORTHO05D007843 5.6e-33 144.8 100 70.0
Actinidia28758 Actinidia chinensis HOM05D006312 ORTHO05D007843 7.3e-33 144.4 94 73.4
A09p44660 Brassica napus HOM05D006312 ORTHO05D007843 7.3e-33 144.4 96 75.0
Actinidia35692 Actinidia chinensis HOM05D006312 ORTHO05D007843 9.5e-33 144.1 94 72.3
Nitab4.5_0003141g0020 Nicotiana tabacum HOM05D006312 ORTHO05D007843 1.2e-32 143.7 116 62.9
Psat3g060840 Pisum sativum HOM05D006312 ORTHO05D007843 1.2e-32 143.7 97 72.2
FAN23G3058 Fragaria x ananassa HOM05D006312 ORTHO05D007843 1.6e-32 143.3 95 72.6
ECA246G0189 Erigeron canadensis HOM05D006312 ORTHO05D007843 2.1e-32 142.9 101 68.3
FvH4_1g09790 Fragaria vesca HOM05D006312 ORTHO05D007843 2.1e-32 142.9 95 72.6
FAN19G0451 Fragaria x ananassa HOM05D006312 ORTHO05D007843 2.1e-32 142.9 95 72.6
FAN23G0139 Fragaria x ananassa HOM05D006312 ORTHO05D007843 2.1e-32 142.9 95 72.6
FAN26G2993 Fragaria x ananassa HOM05D006312 ORTHO05D007843 2.1e-32 142.9 95 72.6
FAN28G0218 Fragaria x ananassa HOM05D006312 ORTHO05D007843 2.1e-32 142.9 95 72.6
Nitab4.5_0003878g0040 Nicotiana tabacum HOM05D006312 ORTHO05D007843 2.1e-32 142.9 105 66.7
TWI34G0319 Tripterygium wilfordii HOM05D006312 ORTHO05D007843 2.1e-32 142.9 95 72.6
THA.LOC104808852 Tarenaya hassleriana HOM05D006312 ORTHO05D007843 2.8e-32 142.5 97 73.2
Cc07_g12330 Coffea canephora HOM05D006312 ORTHO05D007843 4.7e-32 141.7 116 62.9
Rhsim08G0025300 Rhododendron simsii HOM05D006312 ORTHO05D007843 8.1e-32 141.0 101 67.3
PSO541G2566 Papaver somniferum HOM05D006312 ORTHO05D007843 1.8e-31 139.8 97 70.1
Peaxi162Scf00981g00214 Petunia axillaris HOM05D006312 ORTHO05D007843 1.8e-31 139.8 95 69.5
Dinv24398 Davidia involucrata HOM05D006312 ORTHO05D007843 2.3e-31 139.4 131 58.0
Dinv28290 Davidia involucrata HOM05D006312 ORTHO05D007843 2.3e-31 139.4 131 58.0
QL06p053470 Quercus lobata HOM05D006312 ORTHO05D007843 2.3e-31 139.4 86 76.7
CAN.G883.25 Capsicum annuum HOM05D006312 ORTHO05D007843 3.1e-31 139.0 156 51.9
Oeu024786.1 Olea europaea HOM05D006312 ORTHO05D007843 5.2e-31 138.3 94 74.5
HanXRQChr16g0532211 Helianthus annuus HOM05D006312 ORTHO05D007843 6.8e-31 137.9 102 64.7
PSO675G2564 Papaver somniferum HOM05D006312 ORTHO05D007843 6.8e-31 137.9 97 70.1
SEGI_12518 Sequoiadendron giganteum HOM05D006312 ORTHO05D007843 8.9e-31 137.5 97 68.0
Hma1.2p1_0034F.1_g021580 Hydrangea macrophylla HOM05D006312 ORTHO05D007843 1.5e-30 136.7 94 71.3
SGA_v2.0_scaffold132G34566 Striga asiatica HOM05D006312 ORTHO05D007843 2.0e-30 136.3 92 72.8
Hma1.2p1_0034F.1_g021590 Hydrangea macrophylla HOM05D006312 ORTHO05D007843 3.4e-30 135.6 92 72.8
FAN23G0893 Fragaria x ananassa HOM05D006312 ORTHO05D007843 4.4e-30 135.2 81 77.8
DCAR_016700 Daucus carota HOM05D006312 ORTHO05D007843 1.3e-29 133.7 98 68.4
Solyc02g068270.4 Solanum lycopersicum HOM05D006312 ORTHO05D007843 2.9e-29 132.5 94 68.1
Sopen02g017370 Solanum pennellii HOM05D006312 ORTHO05D007843 3.7e-29 132.1 94 68.1
MSTRG.3652 Avicennia marina HOM05D006312 ORTHO05D007843 8.4e-29 131.0 112 63.4
SalBow5G1176 Salvia bowleyana HOM05D006312 ORTHO05D007843 8.4e-29 131.0 91 68.1
CiPaw.08G182900 Carya illinoinensis HOM05D006312 ORTHO05D007843 1.1e-28 130.6 91 69.2
HPP92_005603 Vanilla planifolia HOM05D006312 ORTHO05D007843 1.4e-28 130.2 93 65.6
Migut.K01209 Erythranthe guttata HOM05D006312 ORTHO05D007843 7.1e-28 127.9 146 50.0
Medtr7g095930 Medicago truncatula HOM05D006312 ORTHO05D007843 7.1e-28 127.9 98 66.3
Zm00001eb291320 Zea mays HOM05D006312 ORTHO05D007843 4.6e-27 125.2 91 68.1
CDE07G0026 Ceratophyllum demersum HOM05D006312 ORTHO05D007843 2.3e-26 122.9 136 53.7
Lalb_Chr01g0019941 Lupinus albus HOM05D006312 ORTHO05D007843 2.3e-26 122.9 99 64.6
Os05g0490900 Oryza sativa ssp. japonica HOM05D006312 ORTHO05D007843 1.1e-23 114.0 121 52.1
SMO356G0733 Selaginella moellendorffii HOM05D006312 ORTHO05D007843 2.4e-23 112.8 85 63.5
CBR_g16852 Chara braunii HOM05D006312 ORTHO05D007843 4.0e-23 112.1 89 60.7
GSVIVG01026613001 Vitis vinifera HOM05D006312 ORTHO05D007843 1.5e-22 110.2 64 81.2
Mapoly0072s0008 Marchantia polymorpha HOM05D006312 ORTHO05D007843 5.8e-22 108.2 94 55.3
AagrBONN_evm.TU.Sc2ySwM_117.3170 Anthoceros agrestis HOM05D006312 ORTHO05D007843 3.8e-21 105.5 95 55.8
unitig_748.g7258 Utricularia gibba HOM05D006312 ORTHO05D007843 7.1e-20 101.3 98 57.1
Pp3c12_25230 Physcomitrium patens HOM05D006312 ORTHO05D007843 2.1e-19 99.8 103 49.5
Aa31LG10G3290 Aethionema arabicum HOM05D001371 ORTHO05D001319 2.8e-16 89.4 60 70.0
CSS0018042 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 4.4e-14 82.0 51 72.5
Cre16.g679300 Chlamydomonas reinhardtii HOM05D006312 ORTHO05D007843 9.3e-12 74.3 95 44.2
CSS0013138 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 2.5e-09 66.2 38 73.7
MCO03G312 Micromonas commoda HOM05D006312 ORTHO05D007843 2.4e-07 59.7 72 44.4


User provided reference genes

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