Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.12g058260 Amaranthus hybridus HOM05D005292 ORTHO05D006473 6.9e-284 979.9 483 100.0
EL10Ac5g12610 Beta vulgaris HOM05D005292 ORTHO05D006473 3.2e-172 609.0 427 72.1
AUR62010507 Chenopodium quinoa HOM05D005292 ORTHO05D006473 1.6e-168 596.7 426 70.9
AUR62017394 Chenopodium quinoa HOM05D005292 ORTHO05D006473 1.5e-158 563.5 359 76.9
Hund14648 Selenicereus undatus HOM05D005292 ORTHO05D006473 1.0e-146 524.2 401 68.3
CANSAT80G2034 Cannabis sativa HOM05D005292 ORTHO05D006473 4.0e-143 512.3 352 72.2
Sc22g0000600 Simmondsia chinensis HOM05D005292 ORTHO05D006473 2.0e-142 510.0 359 71.6
COL.COLO4_31983 Corchorus olitorius HOM05D005292 ORTHO05D006473 3.4e-142 509.2 371 68.7
Thecc.03G261400 Theobroma cacao HOM05D005292 ORTHO05D006473 5.8e-142 508.4 337 73.0
CSS0004035 Camellia sinensis var. sinensis HOM05D005292 ORTHO05D006473 1.0e-141 507.7 321 75.4
Manes.02G033900 Manihot esculenta HOM05D005292 ORTHO05D006473 1.0e-141 507.7 385 66.5
Cpa.g.sc29.95 Carica papaya HOM05D005292 ORTHO05D006473 2.2e-141 506.5 349 71.9
Ah.02g116220 Amaranthus hybridus HOM05D005292 ORTHO05D006473 2.9e-141 506.1 308 80.5
Glyma.17G134700 Glycine max HOM05D005292 ORTHO05D006473 3.8e-141 505.8 365 68.2
Duzib084G0213 Durio zibethinus HOM05D005292 ORTHO05D006473 8.4e-141 504.6 371 67.9
Nn1g01261 Nelumbo nucifera HOM05D005292 ORTHO05D006473 2.5e-140 503.1 369 67.2
QL12p014915 Quercus lobata HOM05D005292 ORTHO05D006473 2.5e-140 503.1 371 68.5
Atru.chr9.1428 Acer truncatum HOM05D005292 ORTHO05D006473 3.2e-140 502.7 372 67.7
Lj4g0005126 Lotus japonicus HOM05D005292 ORTHO05D006473 3.2e-140 502.7 353 70.5
Oeu016513.1 Olea europaea HOM05D005292 ORTHO05D006473 3.2e-140 502.7 383 66.3
Prupe.5G079200 Prunus persica HOM05D005292 ORTHO05D006473 3.2e-140 502.7 357 70.9
VMungo1215G1740 Vigna mungo HOM05D005292 ORTHO05D006473 3.2e-140 502.7 363 68.3
Ca_12278_v3 Cicer arietinum L. HOM05D005292 ORTHO05D006473 5.5e-140 501.9 375 66.7
CiPaw.11G147800 Carya illinoinensis HOM05D005292 ORTHO05D006473 9.3e-140 501.1 371 68.7
CiPaw.12G105300 Carya illinoinensis HOM05D005292 ORTHO05D006473 9.3e-140 501.1 330 73.9
GSVIVG01004916001 Vitis vinifera HOM05D005292 ORTHO05D006473 9.3e-140 501.1 357 69.7
Cfa012803 Carpinus fangiana HOM05D005292 ORTHO05D006473 1.2e-139 500.7 374 68.2
Glyma.05G052500 Glycine max HOM05D005292 ORTHO05D006473 1.2e-139 500.7 363 68.6
Phvul.003G214500 Phaseolus vulgaris HOM05D005292 ORTHO05D006473 2.1e-139 500.0 363 68.9
arahy.Tifrunner.gnm1.ann1.VS5X7Y Arachis hypogaea HOM05D005292 ORTHO05D006473 2.7e-139 499.6 352 70.7
arahy.Tifrunner.gnm1.ann1.YRMJ3W Arachis hypogaea HOM05D005292 ORTHO05D006473 2.7e-139 499.6 352 70.7
Potri.001G118000 Populus trichocarpa HOM05D005292 ORTHO05D006473 3.5e-139 499.2 340 72.1
CsaV3_5G003780 Cucumis sativus L. HOM05D005292 ORTHO05D006473 4.6e-139 498.8 337 72.1
THA.LOC104813867 Tarenaya hassleriana HOM05D005292 ORTHO05D006473 4.6e-139 498.8 317 74.4
TWI15G0139 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 6.0e-139 498.4 318 75.2
DCAR_006803 Daucus carota HOM05D005292 ORTHO05D006473 7.9e-139 498.0 315 75.9
Dinv21573 Davidia involucrata HOM05D005292 ORTHO05D006473 7.9e-139 498.0 318 75.2
AT4G12230 Arabidopsis thaliana HOM05D005292 ORTHO05D006473 1.0e-138 497.7 321 74.5
Gohir.D03G157800 Gossypium hirsutum HOM05D005292 ORTHO05D006473 2.3e-138 496.5 380 65.5
Potri.003G114900 Populus trichocarpa HOM05D005292 ORTHO05D006473 2.3e-138 496.5 337 71.8
Aa31LG9G10310 Aethionema arabicum HOM05D005292 ORTHO05D006473 3.0e-138 496.1 321 75.1
CARHR254020 Cardamine hirsuta HOM05D005292 ORTHO05D006473 3.9e-138 495.7 317 75.1
Gohir.D12G223000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 3.9e-138 495.7 373 66.5
Peaxi162Scf00271g00021 Petunia axillaris HOM05D005292 ORTHO05D006473 3.9e-138 495.7 359 68.5
Cc08_g13210 Coffea canephora HOM05D005292 ORTHO05D006473 5.1e-138 495.4 384 65.1
FAN04G0899 Fragaria x ananassa HOM05D005292 ORTHO05D006473 8.7e-138 494.6 318 75.2
FAN08G1347 Fragaria x ananassa HOM05D005292 ORTHO05D006473 8.7e-138 494.6 318 75.5
FAN18G3339 Fragaria x ananassa HOM05D005292 ORTHO05D006473 8.7e-138 494.6 318 75.5
Gohir.A11G020400 Gossypium hirsutum HOM05D005292 ORTHO05D006473 8.7e-138 494.6 335 72.2
MD04G1079900 Malus domestica HOM05D005292 ORTHO05D006473 8.7e-138 494.6 354 69.8
Lj8A255T56 Lonicera japonica HOM05D005292 ORTHO05D006473 1.1e-137 494.2 321 74.1
Sed0004099 Sechium edule HOM05D005292 ORTHO05D006473 1.1e-137 494.2 370 66.2
FAN13G3324 Fragaria x ananassa HOM05D005292 ORTHO05D006473 1.9e-137 493.4 318 75.2
TPR.G37684 Trifolium pratense HOM05D005292 ORTHO05D006473 1.9e-137 493.4 331 71.6
Gorai.007G021400 Gossypium raimondii HOM05D005292 ORTHO05D006473 2.5e-137 493.0 339 72.0
AL6G47090 Arabidopsis lyrata HOM05D005292 ORTHO05D006473 3.3e-137 492.7 317 74.4
Lalb_Chr05g0225431 Lupinus albus HOM05D005292 ORTHO05D006473 3.3e-137 492.7 351 70.1
Psat4g068120 Pisum sativum HOM05D005292 ORTHO05D006473 3.3e-137 492.7 338 70.7
MSTRG.12063 Avicennia marina HOM05D005292 ORTHO05D006473 7.4e-137 491.5 392 65.1
PGR031G2306 Punica granatum HOM05D005292 ORTHO05D006473 7.4e-137 491.5 416 60.6
PGSC0003DMG400003959 Solanum tuberosum HOM05D005292 ORTHO05D006473 9.7e-137 491.1 324 72.5
CAN.G630.87 Capsicum annuum HOM05D005292 ORTHO05D006473 1.3e-136 490.7 359 68.2
Medtr4g102260 Medicago truncatula HOM05D005292 ORTHO05D006473 2.2e-136 490.0 331 71.0
SalBow1G6483 Salvia bowleyana HOM05D005292 ORTHO05D006473 2.2e-136 490.0 368 67.9
Carub.0006s3135 Capsella rubella HOM05D005292 ORTHO05D006473 2.8e-136 489.6 317 73.8
Nitab4.5_0003534g0020 Nicotiana tabacum HOM05D005292 ORTHO05D006473 3.7e-136 489.2 340 70.0
Ciclev10020454m.g Citrus clementina HOM05D005292 ORTHO05D006473 4.8e-136 488.8 372 65.6
Hma1.2p1_0367F.1_g137040 Hydrangea macrophylla HOM05D005292 ORTHO05D006473 4.8e-136 488.8 391 65.0
Gohir.A03G012000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 6.3e-136 488.4 380 64.7
Nitab4.5_0007591g0040 Nicotiana tabacum HOM05D005292 ORTHO05D006473 6.3e-136 488.4 324 72.2
RcHm_v2.0_Chr7g0201621 Rosa chinensis HOM05D005292 ORTHO05D006473 6.3e-136 488.4 318 74.5
Migut.A00832 Erythranthe guttata HOM05D005292 ORTHO05D006473 1.1e-135 487.6 318 73.3
Thhalv10028717m.g Eutrema salsugineum HOM05D005292 ORTHO05D006473 1.1e-135 487.6 317 74.1
TAR636G1323 Trochodendron aralioides HOM05D005292 ORTHO05D006473 1.1e-135 487.6 353 70.0
Actinidia02093 Actinidia chinensis HOM05D005292 ORTHO05D006473 1.4e-135 487.3 318 74.2
ECA233G3282 Erigeron canadensis HOM05D005292 ORTHO05D006473 1.4e-135 487.3 321 74.1
HanXRQChr02g0046251 Helianthus annuus HOM05D005292 ORTHO05D006473 1.8e-135 486.9 322 72.7
Sopen08g027820 Solanum pennellii HOM05D005292 ORTHO05D006473 2.4e-135 486.5 355 67.6
Gohir.D11G020100 Gossypium hirsutum HOM05D005292 ORTHO05D006473 3.1e-135 486.1 335 71.3
Eucgr.D01991 Eucalyptus grandis HOM05D005292 ORTHO05D006473 5.3e-135 485.3 373 66.0
Aqoxy7G00654 Aquilegia oxysepala HOM05D005292 ORTHO05D006473 6.9e-135 485.0 319 73.0
Solyc08g079450.3 Solanum lycopersicum HOM05D005292 ORTHO05D006473 1.5e-134 483.8 355 67.3
CDE09G1063 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 2.0e-134 483.4 376 63.0
Gohir.A12G220700 Gossypium hirsutum HOM05D005292 ORTHO05D006473 2.6e-134 483.0 346 68.8
Gorai.008G239300 Gossypium raimondii HOM05D005292 ORTHO05D006473 3.4e-134 482.6 398 62.3
BcaB01g02654 Brassica carinata HOM05D005292 ORTHO05D006473 5.9e-134 481.9 317 73.2
Sp6g05330 Schrenkiella parvula HOM05D005292 ORTHO05D006473 5.9e-134 481.9 317 73.2
Gorai.003G166300 Gossypium raimondii HOM05D005292 ORTHO05D006473 1.0e-133 481.1 340 69.4
PSO478G4449 Papaver somniferum HOM05D005292 ORTHO05D006473 1.0e-133 481.1 315 73.0
PSO782G2032 Papaver somniferum HOM05D005292 ORTHO05D006473 1.7e-133 480.3 346 68.8
SGA_v2.0_scaffold120G32820 Striga asiatica HOM05D005292 ORTHO05D006473 2.9e-133 479.6 419 59.9
A03p29600 Brassica napus HOM05D005292 ORTHO05D006473 3.8e-133 479.2 317 73.2
BraA03t12155Z Brassica rapa HOM05D005292 ORTHO05D006473 3.8e-133 479.2 317 73.2
BcaC01g04601 Brassica carinata HOM05D005292 ORTHO05D006473 5.0e-133 478.8 317 72.9
MBI12_g31646_MAGBIO Magnolia biondii HOM05D005292 ORTHO05D006473 2.5e-132 476.5 332 70.2
Os10g0169800 Oryza sativa ssp. japonica HOM05D005292 ORTHO05D006473 9.4e-132 474.6 367 63.2
C03p35880 Brassica napus HOM05D005292 ORTHO05D006473 1.2e-131 474.2 318 72.6
BolC3t15896H Brassica oleracea HOM05D005292 ORTHO05D006473 1.2e-131 474.2 318 72.6
HanXRQChr07g0188671 Helianthus annuus HOM05D005292 ORTHO05D006473 3.6e-131 472.6 391 61.9
vmacro14043 Vaccinium macrocarpon HOM05D005292 ORTHO05D006473 3.0e-130 469.5 289 77.5
ClCG01G003660 Citrullus lanatus HOM05D005292 ORTHO05D006473 1.3e-128 464.2 382 63.4
Zm00001eb026990 Zea mays HOM05D005292 ORTHO05D006473 1.8e-127 460.3 314 69.4
CDE11G0205 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 6.9e-127 458.4 315 68.9
ATR0757G031 Amborella trichopoda HOM05D005292 ORTHO05D006473 5.0e-125 452.2 265 78.5
Lsat_1_v5_gn_6_9841 Lactuca sativa HOM05D005292 ORTHO05D006473 9.4e-124 448.0 300 73.0
unitig_744.g24320 Utricularia gibba HOM05D005292 ORTHO05D006473 1.6e-123 447.2 361 61.5
Sabra01G0090700 Salix brachista HOM05D005292 ORTHO05D006473 2.1e-123 446.8 417 56.8
HPP92_014608 Vanilla planifolia HOM05D005292 ORTHO05D006473 1.0e-122 444.5 310 67.7
Dinv39082 Davidia involucrata HOM05D005292 ORTHO05D006473 5.1e-122 442.2 353 63.7
Haze_08610 Corylus avellana HOM05D005292 ORTHO05D006473 8.8e-122 441.4 418 58.4
Nn4g26373 Nelumbo nucifera HOM05D005292 ORTHO05D006473 1.4e-116 424.1 363 60.3
TWI15G0397 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 1.4e-114 417.5 318 66.4
Pp3c6_20320 Physcomitrium patens HOM05D005292 ORTHO05D006473 1.0e-109 401.4 333 58.3
SEGI_16146 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 1.5e-108 397.5 352 55.4
FvH4_5g00640 Fragaria vesca HOM05D005292 ORTHO05D006473 3.2e-108 396.4 219 85.8
Rhsim07G0101700 Rhododendron simsii HOM05D005292 ORTHO05D006473 1.5e-105 387.5 321 61.7
Mapoly0066s0051 Marchantia polymorpha HOM05D005292 ORTHO05D006473 3.7e-104 382.9 311 58.2
AagrBONN_evm.TU.Sc2ySwM_368.248 Anthoceros agrestis HOM05D005292 ORTHO05D006473 1.1e-103 381.3 309 59.5
SMO223G0031 Selaginella moellendorffii HOM05D005292 ORTHO05D006473 7.7e-102 375.2 306 58.2
Sabra03G0079600 Salix brachista HOM05D005292 ORTHO05D006473 3.8e-101 372.9 254 71.7
Duzib205G1434 Durio zibethinus HOM05D005292 ORTHO05D006473 1.8e-90 337.4 234 73.5
Oeu022319.3 Olea europaea HOM05D005292 ORTHO05D006473 3.7e-88 329.7 374 51.6
TAR629G1108 Trochodendron aralioides HOM05D005292 ORTHO05D006473 1.0e-85 321.6 218 69.3
Actinidia14462 Actinidia chinensis HOM05D005292 ORTHO05D006473 8.9e-82 308.5 318 53.5
Dinv37766 Davidia involucrata HOM05D005292 ORTHO05D006473 5.2e-66 256.1 142 85.9
Aa31LG11G5120 Aethionema arabicum HOM05D005292 ORTHO05D006473 8.9e-66 255.4 182 65.9
MD06G1074900 Malus domestica HOM05D005292 ORTHO05D006473 1.4e-63 248.1 180 66.1
Lsat_1_v5_gn_8_156781 Lactuca sativa HOM05D005292 ORTHO05D006473 1.2e-46 191.8 173 60.7
MELO3C005579.2 Cucumis melo HOM05D005292 ORTHO05D006473 5.6e-44 183.0 120 76.7
Lsat_1_v5_gn_2_99060 Lactuca sativa HOM05D005292 ORTHO05D006473 1.7e-40 171.4 120 72.5
Lsat_1_v5_gn_8_88300 Lactuca sativa HOM05D005292 ORTHO05D006473 1.5e-36 158.3 273 38.1
Lsat_1_v5_gn_8_99640 Lactuca sativa HOM05D005292 ORTHO05D006473 1.4e-34 151.8 161 52.2
SEGI_25328 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 6.0e-30 136.3 130 49.2
SEGI_08273 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 1.3e-29 135.2 84 75.0
TAR636G3691 Trochodendron aralioides HOM05D005292 ORTHO05D006473 4.3e-28 130.2 101 68.3
Glyma.05G052200 Glycine max HOM05D005292 ORTHO05D006473 9.0e-26 122.5 137 50.4
SEGI_15988 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 2.9e-24 117.5 66 80.3
MD06G1074800 Malus domestica HOM05D005292 ORTHO05D006473 3.8e-24 117.1 72 80.6
TWI81G0363 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 6.1e-22 109.8 71 76.1
Cc08_g13200 Coffea canephora HOM05D005292 ORTHO05D006473 9.7e-20 102.4 101 50.5
CDE11G1060 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 3.7e-19 100.5 101 48.5
Eucgr.C02046 Eucalyptus grandis HOM05D005292 ORTHO05D006473 7.2e-15 86.3 66 63.6
AUR62030418 Chenopodium quinoa HOM05D000002 ORTHO05D000001 2.0e-12 78.2 114 39.5
vmacro17465 Vaccinium macrocarpon HOM05D002883 ORTHO05D003116 3.3e-12 77.4 40 77.5
SEGI_07793 Sequoiadendron giganteum HOM05D006974 ORTHO05D008869 2.5e-07 61.2 314 25.5


User provided reference genes

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