Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.12g057360 Amaranthus hybridus HOM05D006617 ORTHO05D008247 1.9e-164 582.4 289 100.0
EL10Ac5g12764 Beta vulgaris HOM05D006617 ORTHO05D008247 6.2e-107 391.3 232 83.6
AUR62017243 Chenopodium quinoa HOM05D006617 ORTHO05D008247 6.9e-106 387.9 258 77.9
Sc22g0000340 Simmondsia chinensis HOM05D006617 ORTHO05D008247 1.0e-93 347.4 283 63.3
Hund11496 Selenicereus undatus HOM05D006617 ORTHO05D008247 7.4e-92 341.3 261 67.0
Atru.chr6.3216 Acer truncatum HOM05D006617 ORTHO05D008247 1.6e-91 340.1 246 69.1
AUR62010601 Chenopodium quinoa HOM05D000030 ORTHO05D008247 4.8e-91 338.6 200 83.5
GSVIVG01019803001 Vitis vinifera HOM05D006617 ORTHO05D008247 2.0e-89 333.2 284 61.3
Ciclev10016122m.g Citrus clementina HOM05D006617 ORTHO05D008247 6.5e-88 328.2 272 61.8
Actinidia14540 Actinidia chinensis HOM05D006617 ORTHO05D008247 8.5e-88 327.8 242 66.9
Hma1.2p1_0514F.1_g169800 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 4.2e-87 325.5 250 68.0
CSS0023405 Camellia sinensis var. sinensis HOM05D006617 ORTHO05D008247 1.6e-86 323.6 248 64.9
CiPaw.11G138400 Carya illinoinensis HOM05D006617 ORTHO05D008247 4.6e-86 322.0 253 63.2
Dinv38979 Davidia involucrata HOM05D006617 ORTHO05D008247 6.1e-86 321.6 229 69.0
QL12p017915 Quercus lobata HOM05D006617 ORTHO05D008247 6.1e-86 321.6 247 63.6
Eucgr.D01883 Eucalyptus grandis HOM05D006617 ORTHO05D008247 1.0e-85 320.9 247 64.4
Migut.A00797 Erythranthe guttata HOM05D006617 ORTHO05D008247 1.4e-85 320.5 251 62.2
COL.COLO4_11251 Corchorus olitorius HOM05D006617 ORTHO05D008247 1.1e-84 317.4 255 63.5
Potri.014G154900 Populus trichocarpa HOM05D006617 ORTHO05D008247 1.5e-84 317.0 245 64.1
SalBow6G1063 Salvia bowleyana HOM05D006617 ORTHO05D008247 2.0e-84 316.6 248 62.5
CAN.G26.17 Capsicum annuum HOM05D006617 ORTHO05D008247 5.7e-84 315.1 255 59.6
Lj8A235T58 Lonicera japonica HOM05D006617 ORTHO05D008247 5.7e-84 315.1 251 62.9
Prupe.5G095100 Prunus persica HOM05D006617 ORTHO05D008247 7.4e-84 314.7 251 61.4
Nn6g33542 Nelumbo nucifera HOM05D006617 ORTHO05D008247 1.3e-83 313.9 236 65.7
VMungo0251G0775 Vigna mungo HOM05D006617 ORTHO05D008247 2.2e-83 313.2 248 61.7
RcHm_v2.0_Chr7g0198641 Rosa chinensis HOM05D006617 ORTHO05D008247 2.8e-83 312.8 251 62.5
ECA233G3703 Erigeron canadensis HOM05D006617 ORTHO05D008247 6.3e-83 311.6 242 64.5
Manes.12G073000 Manihot esculenta HOM05D006617 ORTHO05D008247 6.3e-83 311.6 238 64.7
Phvul.002G287200 Phaseolus vulgaris HOM05D006617 ORTHO05D008247 6.3e-83 311.6 262 59.2
MD06G1077000 Malus domestica HOM05D006617 ORTHO05D008247 1.1e-82 310.8 257 59.9
TWI36G1290 Tripterygium wilfordii HOM05D006617 ORTHO05D008247 1.8e-82 310.1 287 57.8
FAN04G2914 Fragaria x ananassa HOM05D006617 ORTHO05D008247 2.4e-82 309.7 251 62.5
Sopen12g028920 Solanum pennellii HOM05D006617 ORTHO05D008247 4.1e-82 308.9 296 54.4
HanXRQChr12g0384501 Helianthus annuus HOM05D006617 ORTHO05D008247 5.3e-82 308.5 248 62.9
TPR.G12841 Trifolium pratense HOM05D006617 ORTHO05D008247 1.2e-81 307.4 245 62.0
Solyc12g056350.2 Solanum lycopersicum HOM05D006617 ORTHO05D008247 1.5e-81 307.0 246 60.2
PGSC0003DMG400004251 Solanum tuberosum HOM05D006617 ORTHO05D008247 1.5e-81 307.0 255 58.4
Cpa.g.sc39.21 Carica papaya HOM05D006617 ORTHO05D008247 2.6e-81 306.2 256 60.5
Cc08_g14300 Coffea canephora HOM05D006617 ORTHO05D008247 2.6e-81 306.2 224 66.1
Thecc.02G366400 Theobroma cacao HOM05D006617 ORTHO05D008247 3.4e-81 305.8 240 62.5
Glyma.05G205300 Glycine max HOM05D006617 ORTHO05D008247 4.5e-81 305.4 266 57.5
Duzib251G0852 Durio zibethinus HOM05D006617 ORTHO05D008247 1.7e-80 303.5 242 62.0
THA.LOC104800995 Tarenaya hassleriana HOM05D006617 ORTHO05D008247 2.2e-80 303.1 251 60.6
DCAR_008412 Daucus carota HOM05D006617 ORTHO05D008247 2.9e-80 302.8 225 67.1
Sed0011813 Sechium edule HOM05D006617 ORTHO05D008247 3.8e-80 302.4 249 60.2
Medtr8g096960 Medicago truncatula HOM05D006617 ORTHO05D008247 5.0e-80 302.0 249 60.6
Psat7g035840 Pisum sativum HOM05D006617 ORTHO05D008247 5.0e-80 302.0 268 57.5
Ca_17553_v3 Cicer arietinum L. HOM05D006617 ORTHO05D008247 1.9e-79 300.1 269 57.6
Lsat_1_v5_gn_6_6941 Lactuca sativa HOM05D006617 ORTHO05D008247 1.9e-79 300.1 241 61.8
Thhalv10017053m.g Eutrema salsugineum HOM05D006617 ORTHO05D008247 2.5e-79 299.7 251 57.8
Lj4g0017727 Lotus japonicus HOM05D006617 ORTHO05D008247 2.5e-79 299.7 236 63.1
Glyma.08G012200 Glycine max HOM05D006617 ORTHO05D008247 4.2e-79 298.9 256 57.8
arahy.Tifrunner.gnm1.ann1.164QK4 Arachis hypogaea HOM05D006617 ORTHO05D008247 5.5e-79 298.5 237 62.4
arahy.Tifrunner.gnm1.ann1.90PEWX Arachis hypogaea HOM05D006617 ORTHO05D008247 5.5e-79 298.5 237 62.4
CsaV3_4G006040 Cucumis sativus L. HOM05D006617 ORTHO05D008247 9.4e-79 297.7 269 56.5
FAN13G2116 Fragaria x ananassa HOM05D006617 ORTHO05D008247 2.1e-78 296.6 244 61.9
Gohir.A12G174300 Gossypium hirsutum HOM05D006617 ORTHO05D008247 7.9e-78 294.7 250 59.6
Carub.0004s1384 Capsella rubella HOM05D006617 ORTHO05D008247 1.0e-77 294.3 251 58.2
Lalb_Chr05g0224971 Lupinus albus HOM05D006617 ORTHO05D008247 1.0e-77 294.3 285 54.0
MELO3C016345.2 Cucumis melo HOM05D006617 ORTHO05D008247 3.0e-77 292.7 269 56.1
Gohir.D12G177000 Gossypium hirsutum HOM05D006617 ORTHO05D008247 5.1e-77 292.0 250 59.6
Gorai.008G189400 Gossypium raimondii HOM05D006617 ORTHO05D008247 5.1e-77 292.0 250 59.6
AL4G27880 Arabidopsis lyrata HOM05D006617 ORTHO05D008247 6.7e-77 291.6 251 57.8
PSO478G3588 Papaver somniferum HOM05D006617 ORTHO05D008247 6.7e-77 291.6 226 64.2
PSO782G1088 Papaver somniferum HOM05D006617 ORTHO05D008247 2.0e-76 290.0 260 57.7
BcaB01g03976 Brassica carinata HOM05D006617 ORTHO05D008247 7.4e-76 288.1 242 58.3
Sp4g14850 Schrenkiella parvula HOM05D006617 ORTHO05D008247 2.8e-75 286.2 251 55.4
Sabra14G0117100 Salix brachista HOM05D006617 ORTHO05D008247 1.8e-74 283.5 216 65.7
TAR375G0379 Trochodendron aralioides HOM05D006617 ORTHO05D008247 2.4e-74 283.1 215 66.5
BcaC01g05904 Brassica carinata HOM05D006617 ORTHO05D008247 7.0e-74 281.6 243 57.6
A03p18190 Brassica napus HOM05D006617 ORTHO05D008247 2.0e-73 280.0 243 56.8
BraA03t11079Z Brassica rapa HOM05D006617 ORTHO05D008247 2.0e-73 280.0 243 56.8
C03p21220 Brassica napus HOM05D006617 ORTHO05D008247 2.6e-73 279.6 243 57.2
BolC3t14504H Brassica oleracea HOM05D006617 ORTHO05D008247 2.6e-73 279.6 243 57.2
FAN18G0570 Fragaria x ananassa HOM05D006617 ORTHO05D008247 1.7e-72 276.9 221 64.3
FvH4_5g01880 Fragaria vesca HOM05D006617 ORTHO05D008247 5.0e-72 275.4 221 63.8
FAN08G3651 Fragaria x ananassa HOM05D006617 ORTHO05D008247 4.2e-71 272.3 221 63.3
Aa31LG5G4800 Aethionema arabicum HOM05D006617 ORTHO05D008247 8.0e-70 268.1 252 54.0
PGR031G1807 Punica granatum HOM05D006617 ORTHO05D008247 5.7e-68 261.9 251 57.0
Haze_08904 Corylus avellana HOM05D006617 ORTHO05D008247 2.4e-66 256.5 215 61.4
ATR0680G238 Amborella trichopoda HOM05D006617 ORTHO05D008247 9.1e-66 254.6 228 55.3
Haze_08908 Corylus avellana HOM05D006617 ORTHO05D008247 1.2e-65 254.2 215 60.9
Peaxi162Scf01294g00327 Petunia axillaris HOM05D006617 ORTHO05D008247 2.0e-65 253.4 225 58.2
Os03g0110900 Oryza sativa ssp. japonica HOM05D006617 ORTHO05D008247 4.5e-65 252.3 244 53.3
HPP92_004974 Vanilla planifolia HOM05D006617 ORTHO05D008247 5.9e-65 251.9 226 55.8
MBI18_g01147_MAGBIO Magnolia biondii HOM05D006617 ORTHO05D008247 6.1e-62 241.9 190 62.6
SEGI_22684 Sequoiadendron giganteum HOM05D006617 ORTHO05D008247 6.8e-61 238.4 221 51.1
Zm00001eb404120 Zea mays HOM05D006617 ORTHO05D008247 8.8e-61 238.0 248 50.0
ClCG07G007980 Citrullus lanatus HOM05D006617 ORTHO05D008247 5.3e-58 228.8 186 59.7
SGA_v2.0_scaffold146G36248 Striga asiatica HOM05D006617 ORTHO05D008247 1.2e-57 227.6 185 61.6
AT2G32500 Arabidopsis thaliana HOM05D006617 ORTHO05D008247 5.2e-53 212.2 188 56.4
Oeu025101.1 Olea europaea HOM05D006617 ORTHO05D008247 1.5e-52 210.7 165 62.4
Nitab4.5_0010198g0030 Nicotiana tabacum HOM05D006617 ORTHO05D008247 3.4e-52 209.5 301 42.5
Actinidia02025 Actinidia chinensis HOM05D006617 ORTHO05D008247 1.8e-50 203.8 182 60.4
Hma1.2p1_3255F.1_g334560 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 1.5e-47 194.1 183 60.1
Pp3c20_8200 Physcomitrium patens HOM05D006617 ORTHO05D008247 9.5e-47 191.4 220 43.2
Nitab4.5_0000360g0080 Nicotiana tabacum HOM05D006617 ORTHO05D008247 4.7e-46 189.1 181 54.7
SMO329G0076 Selaginella moellendorffii HOM05D006617 ORTHO05D008247 1.8e-45 187.2 222 42.3
AagrBONN_evm.TU.Sc2ySwM_228.4793 Anthoceros agrestis HOM05D006617 ORTHO05D008247 5.7e-44 182.2 248 40.3
Nitab4.5_0029474g0010 Nicotiana tabacum HOM05D006617 ORTHO05D008247 1.3e-43 181.0 190 49.5
AUR62042944 Chenopodium quinoa HOM05D006617 ORTHO05D008247 1.1e-42 177.9 141 66.7
Aqoxy7G00382 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 2.1e-38 163.7 134 60.4
MSTRG.12003 Avicennia marina HOM05D006617 ORTHO05D008247 3.4e-36 156.4 116 64.7
CARHR126330 Cardamine hirsuta HOM05D006617 ORTHO05D008247 3.7e-35 152.9 134 54.5
Aqoxy7G00383 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 1.0e-32 144.8 103 66.0
Mapoly0086s0010 Marchantia polymorpha HOM05D006617 ORTHO05D008247 7.8e-25 118.6 227 30.8
Pp3c7_1410 Physcomitrium patens HOM05D006617 ORTHO05D008247 7.8e-25 118.6 215 31.6
Mapoly0086s0005 Marchantia polymorpha HOM05D006617 ORTHO05D008247 1.3e-24 117.9 199 34.2
Lsat_1_v5_gn_8_1081 Lactuca sativa HOM05D006617 ORTHO05D008247 6.4e-19 99.0 103 54.4
Pp3c8_19270 Physcomitrium patens HOM05D006617 ORTHO05D008247 3.2e-18 96.7 225 28.4
PRCOL_00003136 Prasinoderma coloniale HOM05D006617 ORTHO05D008247 7.8e-17 92.0 201 30.8
CBR_g57728 Chara braunii HOM05D006617 ORTHO05D008247 5.1e-16 89.4 115 40.9
Glyma.05G087800 Glycine max HOM05D006617 ORTHO05D008247 3.3e-15 86.7 76 56.6
CDE06G1437 Ceratophyllum demersum HOM05D006617 ORTHO05D008247 1.7e-11 74.3 63 58.7
Pp3c15_7020 Physcomitrium patens HOM05D003252 ORTHO05D003640 6.0e-09 65.9 204 23.5
AT2G31670 Arabidopsis thaliana HOM05D003252 ORTHO05D003640 2.3e-08 63.9 202 27.2
MBI19_g11841_MAGBIO Magnolia biondii HOM05D003252 ORTHO05D003640 2.3e-08 63.9 227 25.1
MD14G1098400 Malus domestica HOM05D006617 ORTHO05D008247 2.3e-08 63.9 74 51.4
Carub.0004s1297 Capsella rubella HOM05D003252 ORTHO05D003640 3.0e-08 63.5 252 25.0
AL4G26910 Arabidopsis lyrata HOM05D003252 ORTHO05D003640 7.3e-07 58.9 202 27.2
QL02p060735 Quercus lobata HOM05D003252 ORTHO05D003640 7.3e-07 58.9 185 26.5
Thecc.09G079800 Theobroma cacao HOM05D003252 ORTHO05D003640 7.3e-07 58.9 224 25.0
Aa31sc893G10 Aethionema arabicum HOM05D003252 ORTHO05D003640 9.6e-07 58.5 212 25.9
Gorai.001G015100 Gossypium raimondii HOM05D003252 ORTHO05D003640 9.6e-07 58.5 215 25.6
Gohir.A07G014600 Gossypium hirsutum HOM05D003252 ORTHO05D003640 1.6e-06 57.8 215 26.0
Gohir.D07G014300 Gossypium hirsutum HOM05D003252 ORTHO05D003640 1.6e-06 57.8 194 26.3
BraA01t03256Z Brassica rapa HOM05D003252 ORTHO05D003640 2.1e-06 57.4 217 25.3
QL02p060441 Quercus lobata HOM05D003252 ORTHO05D003640 2.1e-06 57.4 190 27.4
Aa31sc437G20 Aethionema arabicum HOM05D003252 ORTHO05D003640 4.8e-06 56.2 213 24.9
Nitab4.5_0000343g0050 Nicotiana tabacum HOM05D003252 ORTHO05D003640 4.8e-06 56.2 237 24.1
MSTRG.10521 Avicennia marina HOM05D003252 ORTHO05D003640 6.2e-06 55.8 196 28.1
Cfa003021 Carpinus fangiana HOM05D003252 ORTHO05D003640 6.2e-06 55.8 213 27.2
Thhalv10002638m.g Eutrema salsugineum HOM05D003252 ORTHO05D003640 6.2e-06 55.8 221 27.1
MELO3C004648.2 Cucumis melo HOM05D003252 ORTHO05D003640 8.1e-06 55.5 113 27.4


User provided reference genes

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