Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.12g057320 Amaranthus hybridus HOM05D005972 ORTHO05D007548 1.7e-216 755.7 380 100.0
EL10Ac5g12767 Beta vulgaris HOM05D005972 ORTHO05D007548 9.8e-177 623.6 379 79.7
Sc22g0000350 Simmondsia chinensis HOM05D005972 ORTHO05D007548 2.3e-141 506.1 379 65.4
CSS0039579 Camellia sinensis var. sinensis HOM05D005972 ORTHO05D007548 1.5e-140 503.4 377 63.4
Rhsim05G0111400 Rhododendron simsii HOM05D005972 ORTHO05D007548 4.3e-140 501.9 375 64.3
TWI73G1071 Tripterygium wilfordii HOM05D005972 ORTHO05D007548 9.9e-137 490.7 378 62.7
Nitab4.5_0000718g0290 Nicotiana tabacum HOM05D005972 ORTHO05D007548 1.3e-136 490.3 376 60.9
Cfa019136 Carpinus fangiana HOM05D005972 ORTHO05D007548 1.7e-136 490.0 376 61.4
Nitab4.5_0012898g0010 Nicotiana tabacum HOM05D005972 ORTHO05D007548 1.7e-136 490.0 376 60.9
Gorai.N007100 Gossypium raimondii HOM05D005972 ORTHO05D007548 2.2e-136 489.6 378 60.6
Lj9A317T77 Lonicera japonica HOM05D005972 ORTHO05D007548 4.9e-136 488.4 376 62.8
CAN.G1513.3 Capsicum annuum HOM05D005972 ORTHO05D007548 1.1e-135 487.3 377 61.5
Manes.16G061300 Manihot esculenta HOM05D005972 ORTHO05D007548 1.9e-135 486.5 377 61.0
COL.COLO4_27930 Corchorus olitorius HOM05D005972 ORTHO05D007548 5.4e-135 485.0 381 62.7
Gohir.D06G178100 Gossypium hirsutum HOM05D005972 ORTHO05D007548 1.2e-134 483.8 378 59.8
vmacro19910 Vaccinium macrocarpon HOM05D005972 ORTHO05D007548 1.2e-134 483.8 377 61.8
GSVIVG01020853001 Vitis vinifera HOM05D005972 ORTHO05D007548 2.1e-134 483.0 375 61.6
Gohir.A06G170300 Gossypium hirsutum HOM05D005972 ORTHO05D007548 3.5e-134 482.3 378 60.1
Potri.001G222400 Populus trichocarpa HOM05D005972 ORTHO05D007548 3.5e-134 482.3 377 63.4
CiPaw.11G025800 Carya illinoinensis HOM05D005972 ORTHO05D007548 4.6e-134 481.9 376 60.9
Eucgr.H00021 Eucalyptus grandis HOM05D005972 ORTHO05D007548 6.0e-134 481.5 379 61.2
MD13G1062400 Malus domestica HOM05D005972 ORTHO05D007548 6.0e-134 481.5 376 63.0
Prupe.1G287600 Prunus persica HOM05D005972 ORTHO05D007548 1.0e-133 480.7 375 62.1
Sopen11g002990 Solanum pennellii HOM05D005972 ORTHO05D007548 1.3e-133 480.3 376 61.2
Thecc.10G118600 Theobroma cacao HOM05D005972 ORTHO05D007548 1.3e-133 480.3 378 60.8
Thecc.04G023500 Theobroma cacao HOM05D005972 ORTHO05D007548 3.0e-133 479.2 378 61.1
BcaNung00313 Brassica carinata HOM05D005972 ORTHO05D007548 3.9e-133 478.8 377 61.3
Duzib106G0263 Durio zibethinus HOM05D005972 ORTHO05D007548 3.9e-133 478.8 375 60.0
Oeu017286.1 Olea europaea HOM05D005972 ORTHO05D007548 3.9e-133 478.8 377 61.8
arahy.Tifrunner.gnm1.ann1.UKM804 Arachis hypogaea HOM05D005972 ORTHO05D007548 5.1e-133 478.4 379 62.0
Cpa.g.sc36.20 Carica papaya HOM05D005972 ORTHO05D007548 1.1e-132 477.2 378 61.6
MSTRG.27825 Avicennia marina HOM05D005972 ORTHO05D007548 1.5e-132 476.9 378 62.7
Dinv24228 Davidia involucrata HOM05D001691 ORTHO05D007548 1.5e-132 476.9 361 63.7
PGR142G0064 Punica granatum HOM05D005972 ORTHO05D007548 1.9e-132 476.5 377 62.9
Psat0s2194g0120 Pisum sativum HOM05D005972 ORTHO05D007548 2.5e-132 476.1 379 61.7
Solyc11g007070.2 Solanum lycopersicum HOM05D005972 ORTHO05D007548 3.3e-132 475.7 376 60.6
arahy.Tifrunner.gnm1.ann1.41EE5L Arachis hypogaea HOM05D005972 ORTHO05D007548 5.6e-132 474.9 379 61.7
QL04p050517 Quercus lobata HOM05D005972 ORTHO05D007548 5.6e-132 474.9 429 55.0
RcHm_v2.0_Chr4g0438261 Rosa chinensis HOM05D005972 ORTHO05D007548 7.4e-132 474.6 375 61.1
FvH4_4g29980 Fragaria vesca HOM05D005972 ORTHO05D007548 4.8e-131 471.9 375 60.8
PSO782G4197 Papaver somniferum HOM05D005972 ORTHO05D007548 4.8e-131 471.9 375 58.1
Ca_18332_v3 Cicer arietinum L. HOM05D005972 ORTHO05D007548 6.2e-131 471.5 377 60.7
FAN12G3642 Fragaria x ananassa HOM05D005972 ORTHO05D007548 6.2e-131 471.5 375 60.8
BcaC09g50180 Brassica carinata HOM05D005972 ORTHO05D007548 8.1e-131 471.1 377 61.3
BolC1t02740H Brassica oleracea HOM05D005972 ORTHO05D007548 8.1e-131 471.1 377 61.3
BraA01t02169Z Brassica rapa HOM05D005972 ORTHO05D007548 8.1e-131 471.1 377 61.3
Actinidia28072 Actinidia chinensis HOM05D005972 ORTHO05D007548 2.4e-130 469.5 375 59.5
PSO063G2120 Papaver somniferum HOM05D005972 ORTHO05D007548 2.4e-130 469.5 375 58.1
Atru.chr12.548 Acer truncatum HOM05D005972 ORTHO05D007548 5.3e-130 468.4 373 60.6
A01p22560 Brassica napus HOM05D005972 ORTHO05D007548 5.3e-130 468.4 377 61.0
THA.LOC104808523 Tarenaya hassleriana HOM05D005972 ORTHO05D007548 5.3e-130 468.4 376 60.4
FAN22G0246 Fragaria x ananassa HOM05D005972 ORTHO05D007548 6.9e-130 468.0 375 60.5
FAN07G1127 Fragaria x ananassa HOM05D005972 ORTHO05D007548 9.0e-130 467.6 375 60.0
BcaB02g07844 Brassica carinata HOM05D005972 ORTHO05D007548 1.5e-129 466.8 378 61.1
C01p28060 Brassica napus HOM05D005972 ORTHO05D007548 1.5e-129 466.8 377 60.5
Migut.N01012 Erythranthe guttata HOM05D005972 ORTHO05D007548 2.0e-129 466.5 380 60.5
Lj4g0025997 Lotus japonicus HOM05D005972 ORTHO05D007548 2.6e-129 466.1 379 60.2
Lalb_Chr12g0208521 Lupinus albus HOM05D005972 ORTHO05D007548 2.6e-129 466.1 379 59.6
TPR.G31487 Trifolium pratense HOM05D005972 ORTHO05D007548 4.5e-129 465.3 379 59.1
Medtr4g094305 Medicago truncatula HOM05D005972 ORTHO05D007548 9.9e-129 464.2 378 59.5
Thhalv10025456m.g Eutrema salsugineum HOM05D005972 ORTHO05D007548 2.2e-128 463.0 381 59.6
SGA_v2.0_scaffold145G36053 Striga asiatica HOM05D005972 ORTHO05D007548 1.9e-127 459.9 378 59.8
AT4G15010 Arabidopsis thaliana HOM05D005972 ORTHO05D007548 4.2e-127 458.8 376 60.4
Glyma.05G120600 Glycine max HOM05D005972 ORTHO05D007548 7.1e-127 458.0 379 58.0
Ciclev10031864m.g Citrus clementina HOM05D005972 ORTHO05D007548 9.3e-127 457.6 374 59.9
FAN17G2742 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.2e-126 457.2 385 58.4
AL7G40820 Arabidopsis lyrata HOM05D005972 ORTHO05D007548 1.6e-126 456.8 376 59.6
Glyma.08G075400 Glycine max HOM05D005972 ORTHO05D007548 2.1e-126 456.4 379 58.3
Carub.0007s2708 Capsella rubella HOM05D005972 ORTHO05D007548 3.5e-126 455.7 376 59.8
ClCG05G021510 Citrullus lanatus HOM05D005972 ORTHO05D007548 4.6e-126 455.3 380 58.7
Haze_07503 Corylus avellana HOM05D005972 ORTHO05D007548 1.3e-125 453.8 376 58.0
Aqoxy4G02449 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 2.3e-125 453.0 406 55.4
CARHR221700 Cardamine hirsuta HOM05D005972 ORTHO05D007548 3.0e-125 452.6 377 58.4
HanXRQChr11g0337671 Helianthus annuus HOM05D005972 ORTHO05D007548 5.1e-125 451.8 377 56.2
Aa31LG9G2330 Aethionema arabicum HOM05D005972 ORTHO05D007548 1.1e-124 450.7 377 59.4
Lsat_1_v5_gn_7_80540 Lactuca sativa HOM05D005972 ORTHO05D007548 9.6e-124 447.6 377 57.0
Sed0010539 Sechium edule HOM05D005972 ORTHO05D007548 1.3e-123 447.2 380 58.2
CsaV3_5G035730 Cucumis sativus L. HOM05D005972 ORTHO05D007548 7.6e-121 438.0 380 55.8
VMungo0251G2526 Vigna mungo HOM05D005972 ORTHO05D007548 2.2e-120 436.4 402 55.2
MELO3C012375.2 Cucumis melo HOM05D005972 ORTHO05D007548 4.2e-119 432.2 380 55.0
ATR0594G009 Amborella trichopoda HOM05D005972 ORTHO05D007548 7.1e-119 431.4 375 56.0
CANSAT80G0182 Cannabis sativa HOM05D005972 ORTHO05D007548 7.9e-118 427.9 377 55.2
CDE04G1870 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 2.3e-117 426.4 378 54.8
Phvul.002G206200 Phaseolus vulgaris HOM05D005972 ORTHO05D007548 2.3e-117 426.4 379 56.5
MBI03_g03956_MAGBIO Magnolia biondii HOM05D005972 ORTHO05D007548 1.5e-116 423.7 375 55.7
SalBow6G6672 Salvia bowleyana HOM05D005972 ORTHO05D007548 1.5e-116 423.7 424 51.7
MD16G1060700 Malus domestica HOM05D005972 ORTHO05D007548 6.9e-114 414.8 365 57.3
ATR0174G007 Amborella trichopoda HOM05D005972 ORTHO05D007548 8.5e-112 407.9 386 53.4
Nn6g35524 Nelumbo nucifera HOM05D005972 ORTHO05D007548 2.1e-110 403.3 377 52.8
Peaxi162Scf00152g01221 Petunia axillaris HOM05D005972 ORTHO05D007548 7.9e-110 401.4 376 51.9
HPP92_021056 Vanilla planifolia HOM05D005972 ORTHO05D007548 2.2e-107 393.3 371 52.0
DCAR_006139 Daucus carota HOM05D005972 ORTHO05D007548 3.5e-97 359.4 316 55.4
SEGI_29488 Sequoiadendron giganteum HOM05D005972 ORTHO05D007548 2.9e-96 356.3 377 44.3
Zm00001eb427070 Zea mays HOM05D005972 ORTHO05D007548 8.8e-93 344.7 372 46.2
Sabra16G0132100 Salix brachista HOM05D005972 ORTHO05D007548 4.7e-86 322.4 268 60.1
unitig_747.g21237 Utricularia gibba HOM05D005972 ORTHO05D007548 6.1e-86 322.0 408 45.3
ECA236G4176 Erigeron canadensis HOM05D005972 ORTHO05D007548 1.5e-84 317.4 266 54.9
Mapoly0188s0014 Marchantia polymorpha HOM05D005972 ORTHO05D007548 5.3e-82 308.9 367 43.9
SHI11404 Sapria himalayana HOM05D005972 ORTHO05D007548 6.3e-75 285.4 276 52.9
Cc02_g21900 Coffea canephora HOM05D005972 ORTHO05D007548 2.8e-70 270.0 188 66.5
Pp3c15_20500 Physcomitrium patens HOM05D005972 ORTHO05D007548 7.5e-68 261.9 378 37.3
COL.COLO4_10011 Corchorus olitorius HOM05D005972 ORTHO05D007548 1.9e-63 247.3 179 63.1
Sp7g13170 Schrenkiella parvula HOM05D005972 ORTHO05D007548 1.5e-44 184.5 163 54.0
C06p16620 Brassica napus HOM05D005972 ORTHO05D007548 4.4e-44 183.0 220 46.4
BolC6t36864H Brassica oleracea HOM05D005972 ORTHO05D007548 4.4e-44 183.0 220 46.4
Cc02_g21910 Coffea canephora HOM05D005972 ORTHO05D007548 1.9e-42 177.6 135 64.4
A05p16900 Brassica napus HOM05D005972 ORTHO05D007548 4.6e-41 172.9 140 57.9
Aqoxy3G01225 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 7.8e-41 172.2 166 52.4
SpUn0490_0010 Schrenkiella parvula HOM05D005972 ORTHO05D007548 3.9e-40 169.9 121 62.8
Os04g0527500 Oryza sativa ssp. japonica HOM05D005972 ORTHO05D007548 1.9e-39 167.5 122 63.1
BcaC08g44257 Brassica carinata HOM05D005972 ORTHO05D024007 2.1e-38 164.1 112 64.3
BraA05t20595Z Brassica rapa HOM05D005972 ORTHO05D007548 2.1e-30 137.5 371 28.8
CAN.G730.4 Capsicum annuum HOM05D005972 ORTHO05D007548 1.1e-26 125.2 377 28.6
HanXRQChr15g0481161 Helianthus annuus HOM05D005972 ORTHO05D007548 1.7e-24 117.9 117 48.7
CAN.G730.17 Capsicum annuum HOM05D005972 ORTHO05D007548 3.3e-23 113.6 108 54.6
CBR_g51824 Chara braunii HOM05D005972 ORTHO05D007548 5.4e-18 96.3 117 41.0
CSS0032497 Camellia sinensis var. sinensis HOM05D001087 ORTHO05D007548 9.6e-15 85.5 101 47.5
A05p16910 Brassica napus HOM05D005972 ORTHO05D007548 2.4e-13 80.9 54 70.4
CAN.G730.12 Capsicum annuum HOM05D005972 ORTHO05D007548 3.4e-12 77.0 51 68.6
CAN.G730.21 Capsicum annuum HOM05D005972 ORTHO05D007548 3.8e-11 73.6 51 66.7
Zm00001eb076720 Zea mays HOM05D005972 ORTHO05D007548 7.1e-10 69.3 109 40.4
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 2.3e-08 64.3 45 66.7
CAN.G1940.2 Capsicum annuum HOM05D005972 ORTHO05D007548 1.5e-07 61.6 49 55.1
COL.COLO4_29892 Corchorus olitorius HOM05D005972 ORTHO05D007548 2.5e-07 60.8 53 56.6
COL.COLO4_10012 Corchorus olitorius HOM05D005972 ORTHO05D007548 4.3e-07 60.1 74 50.0
arahy.Tifrunner.gnm1.ann1.YJH68W Arachis hypogaea HOM05D005972 ORTHO05D083016 5.7e-07 59.7 48 58.3
HPP92_001618 Vanilla planifolia HOM05D000076 ORTHO05D002916 5.7e-07 59.7 133 32.3
arahy.Tifrunner.gnm1.ann1.03MD5J Arachis hypogaea HOM05D000575 ORTHO05D011349 7.4e-07 59.3 78 42.3
arahy.Tifrunner.gnm1.ann1.9A5XZY Arachis hypogaea HOM05D005972 ORTHO05D031493 9.6e-07 58.9 78 47.4
CDE08G1644 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 1.6e-06 58.2 43 62.8
Aa31LG1G18960 Aethionema arabicum HOM05D000406 ORTHO05D003425 2.1e-06 57.8 131 29.0
CSS0030864 Camellia sinensis var. sinensis HOM05D000451 ORTHO05D000351 2.1e-06 57.8 93 38.7
Potri.014G135530 Populus trichocarpa HOM05D000406 ORTHO05D008572 4.8e-06 56.6 141 33.3
THA.LOC104807534 Tarenaya hassleriana HOM05D000406 ORTHO05D003425 4.8e-06 56.6 131 29.0
COL.COLO4_35056 Corchorus olitorius HOM05D000406 ORTHO05D003425 6.2e-06 56.2 153 29.4
Lj2A748G16 Lonicera japonica HOM05D000406 ORTHO05D003425 6.2e-06 56.2 131 29.8
HPP92_024047 Vanilla planifolia HOM05D000406 ORTHO05D003425 6.2e-06 56.2 133 28.6
Potri.003G220400 Populus trichocarpa HOM05D000406 ORTHO05D003425 8.2e-06 55.8 131 29.8


User provided reference genes

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