Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.12g056770 Amaranthus hybridus HOM05D004191 ORTHO05D004887 3.8e-37 157.5 73 100.0
Cc05_g13280 Coffea canephora HOM05D004191 ORTHO05D004887 4.6e-14 80.9 68 61.8
Oeu007633.1 Olea europaea HOM05D004191 ORTHO05D004887 5.9e-14 80.5 68 58.8
AUR62007507 Chenopodium quinoa HOM05D004191 ORTHO05D004887 7.8e-14 80.1 68 61.8
Nitab4.5_0002229g0200 Nicotiana tabacum HOM05D004191 ORTHO05D004887 7.8e-14 80.1 68 60.3
Nitab4.5_0002342g0090 Nicotiana tabacum HOM05D004191 ORTHO05D004887 7.8e-14 80.1 68 60.3
Peaxi162Scf01434g00020 Petunia axillaris HOM05D004191 ORTHO05D004887 1.0e-13 79.7 68 58.8
SalBow7G2717 Salvia bowleyana HOM05D004191 ORTHO05D004887 1.3e-13 79.3 68 58.8
CSS0034391 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 1.7e-13 79.0 68 57.4
CAN.G1110.10 Capsicum annuum HOM05D004191 ORTHO05D004887 1.7e-13 79.0 68 58.8
Ah.02g116780 Amaranthus hybridus HOM05D004191 ORTHO05D004887 2.3e-13 78.6 68 58.8
EL10Ac5g13057 Beta vulgaris HOM05D004191 ORTHO05D004887 2.3e-13 78.6 68 60.3
Lj1A865T18 Lonicera japonica HOM05D004191 ORTHO05D004887 2.3e-13 78.6 68 58.8
Nitab4.5_0002838g0150 Nicotiana tabacum HOM05D004191 ORTHO05D004887 2.3e-13 78.6 68 57.4
Nitab4.5_0005420g0050 Nicotiana tabacum HOM05D004191 ORTHO05D004887 2.3e-13 78.6 68 57.4
Oeu032442.1 Olea europaea HOM05D004191 ORTHO05D004887 2.3e-13 78.6 68 57.4
GSVIVG01002004001 Vitis vinifera HOM05D004191 ORTHO05D004887 2.3e-13 78.6 68 58.8
COL.COLO4_05062 Corchorus olitorius HOM05D004191 ORTHO05D004887 2.9e-13 78.2 68 58.8
ECA236G4841 Erigeron canadensis HOM05D004191 ORTHO05D004887 2.9e-13 78.2 68 57.4
Peaxi162Scf00082g00016 Petunia axillaris HOM05D004191 ORTHO05D004887 2.9e-13 78.2 68 57.4
Solyc10g006490.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 2.9e-13 78.2 68 58.8
PGSC0003DMG400005405 Solanum tuberosum HOM05D004191 ORTHO05D004887 2.9e-13 78.2 68 57.4
PGSC0003DMG400029125 Solanum tuberosum HOM05D004191 ORTHO05D004887 2.9e-13 78.2 68 58.8
CSS0028201 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 3.9e-13 77.8 68 55.9
HanXRQChr02g0054141 Helianthus annuus HOM05D004191 ORTHO05D004887 3.9e-13 77.8 68 57.4
QL08p013180 Quercus lobata HOM05D004191 ORTHO05D004887 3.9e-13 77.8 68 57.4
Hund11592 Selenicereus undatus HOM05D004191 ORTHO05D004887 3.9e-13 77.8 68 58.8
SGA_v2.0_scaffold24G10288 Striga asiatica HOM05D004191 ORTHO05D004887 3.9e-13 77.8 68 57.4
SGA_v2.0_scaffold416G51230 Striga asiatica HOM05D004191 ORTHO05D004887 3.9e-13 77.8 68 57.4
TAR371G0103 Trochodendron aralioides HOM05D004191 ORTHO05D004887 3.9e-13 77.8 68 55.9
arahy.Tifrunner.gnm1.ann1.HY89VY Arachis hypogaea HOM05D004191 ORTHO05D004887 5.0e-13 77.4 68 57.4
CAN.G134.12 Capsicum annuum HOM05D004191 ORTHO05D004887 5.0e-13 77.4 68 57.4
CiPaw.11G184500 Carya illinoinensis HOM05D004191 ORTHO05D004887 5.0e-13 77.4 68 55.9
CiPaw.12G126500 Carya illinoinensis HOM05D004191 ORTHO05D004887 5.0e-13 77.4 68 55.9
MBI02_g10101_MAGBIO Magnolia biondii HOM05D004191 ORTHO05D004887 5.0e-13 77.4 68 57.4
Nn1g08677 Nelumbo nucifera HOM05D004191 ORTHO05D004887 5.0e-13 77.4 68 57.4
PSO170G1932 Papaver somniferum HOM05D004191 ORTHO05D004887 5.0e-13 77.4 68 55.9
PSO675G8300 Papaver somniferum HOM05D004191 ORTHO05D004887 5.0e-13 77.4 68 55.9
PSO782G4612 Papaver somniferum HOM05D004191 ORTHO05D004887 5.0e-13 77.4 68 55.9
COL.COLO4_37956 Corchorus olitorius HOM05D004191 ORTHO05D004887 6.6e-13 77.0 68 57.4
Duzib093G1201 Durio zibethinus HOM05D004191 ORTHO05D004887 6.6e-13 77.0 68 57.4
Sc22g0000820 Simmondsia chinensis HOM05D004191 ORTHO05D004887 6.6e-13 77.0 68 58.8
Thecc.05G140700 Theobroma cacao HOM05D004191 ORTHO05D004887 6.6e-13 77.0 68 57.4
unitig_0.g2386 Utricularia gibba HOM05D004191 ORTHO05D004887 6.6e-13 77.0 68 57.4
Aqoxy4G00334 Aquilegia oxysepala HOM05D004191 ORTHO05D004887 8.6e-13 76.6 68 55.9
MSTRG.6892 Avicennia marina HOM05D004191 ORTHO05D004887 8.6e-13 76.6 68 55.9
Cfa020410 Carpinus fangiana HOM05D004191 ORTHO05D004887 8.6e-13 76.6 68 55.9
FvH4_3g21920 Fragaria vesca HOM05D004191 ORTHO05D004887 8.6e-13 76.6 68 55.9
FAN11G1314 Fragaria x ananassa HOM05D004191 ORTHO05D004887 8.6e-13 76.6 68 55.9
FAN16G1028 Fragaria x ananassa HOM05D004191 ORTHO05D004887 8.6e-13 76.6 68 55.9
FAN21G0017 Fragaria x ananassa HOM05D004191 ORTHO05D004887 8.6e-13 76.6 68 55.9
Os03g0402000 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 8.6e-13 76.6 68 57.4
Os07g0642300 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 8.6e-13 76.6 68 57.4
Potri.001G418400 Populus trichocarpa HOM05D004191 ORTHO05D004887 8.6e-13 76.6 68 55.9
Rhsim12G0150700 Rhododendron simsii HOM05D004191 ORTHO05D004887 8.6e-13 76.6 68 55.9
RcHm_v2.0_Chr5g0037731 Rosa chinensis HOM05D004191 ORTHO05D004887 8.6e-13 76.6 68 55.9
Sabra16G0284100 Salix brachista HOM05D004191 ORTHO05D004887 8.6e-13 76.6 68 55.9
Sopen10g002440 Solanum pennellii HOM05D004191 ORTHO05D004887 8.6e-13 76.6 68 57.4
ATR0609G026 Amborella trichopoda HOM05D004191 ORTHO05D004887 1.1e-12 76.3 68 55.9
ClCG05G014740 Citrullus lanatus HOM05D004191 ORTHO05D004887 1.1e-12 76.3 68 57.4
MELO3C018102.2 Cucumis melo HOM05D004191 ORTHO05D004887 1.1e-12 76.3 68 57.4
CsaV3_3G023130 Cucumis sativus L. HOM05D004191 ORTHO05D004887 1.1e-12 76.3 68 57.4
Migut.M01809 Erythranthe guttata HOM05D004191 ORTHO05D004887 1.1e-12 76.3 68 54.4
PGR031G0276 Punica granatum HOM05D004191 ORTHO05D004887 1.1e-12 76.3 68 55.9
Solyc01g096530.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 1.1e-12 76.3 68 55.9
vmacro16476 Vaccinium macrocarpon HOM05D004191 ORTHO05D004887 1.1e-12 76.3 68 54.4
Zm00001eb067130 Zea mays HOM05D004191 ORTHO05D004887 1.1e-12 76.3 68 57.4
arahy.Tifrunner.gnm1.ann1.B9KZG1 Arachis hypogaea HOM05D004191 ORTHO05D004887 1.5e-12 75.9 68 55.9
Ciclev10009626m.g Citrus clementina HOM05D004191 ORTHO05D004887 1.5e-12 75.9 68 55.9
Duzib106G0849 Durio zibethinus HOM05D004191 ORTHO05D004887 1.5e-12 75.9 68 55.9
Lsat_1_v5_gn_5_5821 Lactuca sativa HOM05D004191 ORTHO05D004887 1.5e-12 75.9 68 51.5
Lj3g0027602 Lotus japonicus HOM05D004191 ORTHO05D004887 1.5e-12 75.9 68 55.9
TAR626G0300 Trochodendron aralioides HOM05D004191 ORTHO05D004887 1.5e-12 75.9 68 55.9
Zm00001eb433090 Zea mays HOM05D004191 ORTHO05D004887 1.5e-12 75.9 68 55.9
Actinidia34670 Actinidia chinensis HOM05D004191 ORTHO05D004887 1.9e-12 75.5 68 54.4
Dinv40713 Davidia involucrata HOM05D004191 ORTHO05D004887 1.9e-12 75.5 68 54.4
Eucgr.F03430 Eucalyptus grandis HOM05D004191 ORTHO05D004887 1.9e-12 75.5 68 55.9
FAN25G1832 Fragaria x ananassa HOM05D004191 ORTHO05D004887 1.9e-12 75.5 68 54.4
Gohir.A09G118400 Gossypium hirsutum HOM05D004191 ORTHO05D004887 2.5e-12 75.1 68 55.9
Gohir.D09G115300 Gossypium hirsutum HOM05D004191 ORTHO05D004887 2.5e-12 75.1 68 55.9
Gorai.006G132900 Gossypium raimondii HOM05D004191 ORTHO05D004887 2.5e-12 75.1 68 55.9
Hma1.2p1_0049F.1_g028640 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 2.5e-12 75.1 68 54.4
MD03G1210500 Malus domestica HOM05D004191 ORTHO05D004887 2.5e-12 75.1 68 54.4
MD11G1225200 Malus domestica HOM05D004191 ORTHO05D004887 2.5e-12 75.1 68 54.4
Manes.03G123300 Manihot esculenta HOM05D004191 ORTHO05D004887 2.5e-12 75.1 68 55.9
Prupe.4G204700 Prunus persica HOM05D004191 ORTHO05D004887 2.5e-12 75.1 68 54.4
Sed0000628 Sechium edule HOM05D004191 ORTHO05D004887 2.5e-12 75.1 68 55.9
Sed0012224 Sechium edule HOM05D004191 ORTHO05D004887 2.5e-12 75.1 68 57.4
Sc15g0001730 Simmondsia chinensis HOM05D004191 ORTHO05D004887 2.5e-12 75.1 68 58.8
Sopen01g040260 Solanum pennellii HOM05D004191 ORTHO05D004887 2.5e-12 75.1 68 55.9
HPP92_013205 Vanilla planifolia HOM05D001003 ORTHO05D004887 2.5e-12 75.1 68 54.4
Carub.0008s1502 Capsella rubella HOM05D004191 ORTHO05D004887 3.3e-12 74.7 68 54.4
Thhalv10019192m.g Eutrema salsugineum HOM05D004191 ORTHO05D004887 3.3e-12 74.7 68 54.4
THA.LOC104799884 Tarenaya hassleriana HOM05D004191 ORTHO05D004887 3.3e-12 74.7 68 54.4
ATR0109G002 Amborella trichopoda HOM05D004191 ORTHO05D004887 4.3e-12 74.3 68 52.9
Migut.H01854 Erythranthe guttata HOM05D004191 ORTHO05D004887 4.3e-12 74.3 68 54.4
BcaB07g31034 Brassica carinata HOM05D004191 ORTHO05D004887 5.6e-12 73.9 68 54.4
A09p20070 Brassica napus HOM05D004191 ORTHO05D004887 5.6e-12 73.9 68 54.4
C09p25460 Brassica napus HOM05D004191 ORTHO05D004887 5.6e-12 73.9 68 54.4
BolC9t55449H Brassica oleracea HOM05D004191 ORTHO05D004887 5.6e-12 73.9 68 54.4
BraA09t37620Z Brassica rapa HOM05D004191 ORTHO05D004887 5.6e-12 73.9 68 54.4
Lsat_1_v5_gn_7_108481 Lactuca sativa HOM05D004191 ORTHO05D004887 5.6e-12 73.9 68 54.4
AL8G30180 Arabidopsis lyrata HOM05D004191 ORTHO05D004887 7.3e-12 73.6 68 52.9
Aa31LG3G10650 Aethionema arabicum HOM05D004191 ORTHO05D004887 9.5e-12 73.2 68 54.4
Lalb_Chr19g0134771 Lupinus albus HOM05D004191 ORTHO05D004887 9.5e-12 73.2 68 52.9
PGR083G1136 Punica granatum HOM05D004191 ORTHO05D004887 9.5e-12 73.2 68 52.9
CANSAT80G0944 Cannabis sativa HOM05D004191 ORTHO05D004887 1.2e-11 72.8 68 52.9
Glyma.06G269400 Glycine max HOM05D004191 ORTHO05D004887 1.2e-11 72.8 68 52.9
Glyma.12G135200 Glycine max HOM05D004191 ORTHO05D004887 1.2e-11 72.8 68 52.9
Lalb_Chr03g0030141 Lupinus albus HOM05D004191 ORTHO05D004887 1.2e-11 72.8 68 52.9
Manes.15G076000 Manihot esculenta HOM05D004191 ORTHO05D004887 1.2e-11 72.8 68 52.9
Phvul.011G139700 Phaseolus vulgaris HOM05D004191 ORTHO05D004887 1.2e-11 72.8 68 52.9
SpUn0117_0020 Schrenkiella parvula HOM05D004191 ORTHO05D004887 1.2e-11 72.8 68 52.9
VMungo1127G0852 Vigna mungo HOM05D004191 ORTHO05D004887 1.2e-11 72.8 68 52.9
AT5G54750 Arabidopsis thaliana HOM05D004191 ORTHO05D004887 1.6e-11 72.4 68 51.5
MSTRG.12958 Avicennia marina HOM05D004191 ORTHO05D004887 1.6e-11 72.4 68 54.4
CARHR268090 Cardamine hirsuta HOM05D004191 ORTHO05D004887 1.6e-11 72.4 68 52.9
Cpa.g.sc97.62 Carica papaya HOM05D004191 ORTHO05D004887 1.6e-11 72.4 68 52.9
Eucgr.F00978 Eucalyptus grandis HOM05D004191 ORTHO05D004887 1.6e-11 72.4 68 52.9
TWI39G0061 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 1.6e-11 72.4 68 54.4
Eucgr.F00980 Eucalyptus grandis HOM05D004191 ORTHO05D004887 2.8e-11 71.6 68 51.5
Ca_18852_v3 Cicer arietinum L. HOM05D004191 ORTHO05D004887 3.6e-11 71.2 68 52.9
Hund24114 Selenicereus undatus HOM05D004191 ORTHO05D004887 3.6e-11 71.2 68 55.9
TWI38G1569 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 3.6e-11 71.2 68 54.4
SEGI_28528 Sequoiadendron giganteum HOM05D004191 ORTHO05D004887 4.7e-11 70.9 68 51.5
Sp4g10480 Schrenkiella parvula HOM05D004191 ORTHO05D004887 8.0e-11 70.1 68 50.0
CDE02G0163 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 1.0e-10 69.7 68 52.9
TPR.G24299 Trifolium pratense HOM05D004191 ORTHO05D004887 1.4e-10 69.3 68 52.9
Medtr4g081170 Medicago truncatula HOM05D004191 ORTHO05D004887 1.8e-10 68.9 68 51.5
arahy.Tifrunner.gnm1.ann1.T6DWBF Arachis hypogaea HOM05D004191 ORTHO05D004887 4.0e-10 67.8 64 51.6
TWI38G1856 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 4.0e-10 67.8 68 51.5
Psat7g161320 Pisum sativum HOM05D004191 ORTHO05D004887 6.8e-10 67.0 68 51.5
TPR.G25893 Trifolium pratense HOM05D004191 ORTHO05D004887 6.8e-10 67.0 68 51.5
Medtr8g027700 Medicago truncatula HOM05D004191 ORTHO05D004887 1.2e-09 66.2 68 51.5
Hma1.2p1_0774F.1_g216345 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 2.0e-09 65.5 65 50.8
SMO165G0074 Selaginella moellendorffii HOM05D004191 ORTHO05D004887 2.6e-09 65.1 68 50.0
AagrBONN_evm.TU.Sc2ySwM_344.5599 Anthoceros agrestis HOM05D004191 ORTHO05D004887 2.9e-08 61.6 66 45.5
AagrBONN_evm.TU.Sc2ySwM_344.5600 Anthoceros agrestis HOM05D004191 ORTHO05D004887 2.9e-08 61.6 66 45.5
AagrBONN_evm.TU.Sc2ySwM_344.5601 Anthoceros agrestis HOM05D004191 ORTHO05D004887 2.9e-08 61.6 66 45.5
AagrBONN_evm.TU.Sc2ySwM_362.1587 Anthoceros agrestis HOM05D004191 ORTHO05D004887 2.9e-08 61.6 66 45.5
Mapoly0006s0106 Marchantia polymorpha HOM05D004191 ORTHO05D004887 4.9e-08 60.8 67 43.3
BcaC04g21960 Brassica carinata HOM05D004191 ORTHO05D004887 2.4e-07 58.5 59 52.5
BcaB07g30600 Brassica carinata HOM05D004191 ORTHO05D004887 3.2e-07 58.2 59 54.2
CBR_g9060 Chara braunii HOM05D004191 ORTHO05D004887 3.2e-07 58.2 60 45.0
Pp3c6_29730 Physcomitrium patens HOM05D004191 ORTHO05D004887 7.0e-07 57.0 68 41.2
Cpa.g.sc2.173 Carica papaya HOM05D004191 ORTHO05D004887 9.2e-07 56.6 68 42.6
AUR62039960 Chenopodium quinoa HOM05D004191 ORTHO05D004887 9.2e-07 56.6 34 76.5
Dinv22301 Davidia involucrata HOM05D004191 ORTHO05D004887 6.0e-06 53.9 34 67.6


User provided reference genes

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