Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.12g054990 Amaranthus hybridus HOM05D004120 ORTHO05D004951 1.0e-207 726.5 371 100.0
EL10Ac5g12129 Beta vulgaris HOM05D004120 ORTHO05D004951 1.9e-169 599.4 388 81.2
AUR62018721 Chenopodium quinoa HOM05D004120 ORTHO05D004951 5.3e-167 591.3 382 81.7
AUR62007285 Chenopodium quinoa HOM05D004120 ORTHO05D004951 7.4e-153 544.3 378 77.5
Hund14402 Selenicereus undatus HOM05D004120 ORTHO05D004951 3.4e-150 535.4 393 76.1
GSVIVG01013166001 Vitis vinifera HOM05D004120 ORTHO05D004951 2.2e-144 516.2 375 73.9
Dinv28953 Davidia involucrata HOM05D004120 ORTHO05D004951 4.5e-142 508.4 376 74.7
Hma1.2p1_0585F.1_g183700 Hydrangea macrophylla HOM05D004120 ORTHO05D004951 1.3e-141 506.9 379 73.4
PGSC0003DMG402001159 Solanum tuberosum HOM05D004120 ORTHO05D004951 2.5e-140 502.7 377 72.7
CSS0046330 Camellia sinensis var. sinensis HOM05D004120 ORTHO05D004951 5.5e-140 501.5 372 73.7
Sopen08g001030 Solanum pennellii HOM05D004120 ORTHO05D004951 5.5e-140 501.5 375 72.0
Dinv25212 Davidia involucrata HOM05D004120 ORTHO05D004951 2.1e-139 499.6 379 72.3
Cc08_g02620 Coffea canephora HOM05D004120 ORTHO05D004951 2.7e-139 499.2 375 71.7
Sc01g0007480 Simmondsia chinensis HOM05D004120 ORTHO05D004951 3.9e-138 495.4 370 74.9
Rhsim11G0014500 Rhododendron simsii HOM05D004120 ORTHO05D004951 6.7e-138 494.6 374 72.5
TAR629G2715 Trochodendron aralioides HOM05D004120 ORTHO05D004951 1.3e-136 490.3 378 70.1
Potri.001G143400 Populus trichocarpa HOM05D004120 ORTHO05D004951 1.7e-136 490.0 382 70.2
arahy.Tifrunner.gnm1.ann1.482M5A Arachis hypogaea HOM05D004120 ORTHO05D004951 6.3e-136 488.0 373 70.5
arahy.Tifrunner.gnm1.ann1.G7H05W Arachis hypogaea HOM05D004120 ORTHO05D004951 6.3e-136 488.0 373 70.5
DCAR_008274 Daucus carota HOM05D004120 ORTHO05D004951 1.1e-135 487.3 371 69.3
Oeu028027.1 Olea europaea HOM05D004120 ORTHO05D004951 1.8e-135 486.5 376 71.3
CAN.G1216.15 Capsicum annuum HOM05D004120 ORTHO05D004951 4.1e-135 485.3 373 70.8
CiPaw.11G092700 Carya illinoinensis HOM05D004120 ORTHO05D004951 4.1e-135 485.3 344 76.5
Migut.E00930 Erythranthe guttata HOM05D004120 ORTHO05D004951 6.9e-135 484.6 381 71.1
Oeu053047.1 Olea europaea HOM05D004120 ORTHO05D004951 6.9e-135 484.6 374 70.1
Nn6g33597 Nelumbo nucifera HOM05D004120 ORTHO05D004951 9.1e-135 484.2 382 69.9
MSTRG.13757 Avicennia marina HOM05D004120 ORTHO05D004951 1.2e-134 483.8 372 71.5
Lsat_1_v5_gn_6_79560 Lactuca sativa HOM05D004120 ORTHO05D004951 1.2e-134 483.8 385 69.6
Manes.17G013200 Manihot esculenta HOM05D004120 ORTHO05D004951 1.5e-134 483.4 367 71.7
MD00G1220600 Malus domestica HOM05D004120 ORTHO05D004951 2.0e-134 483.0 368 70.4
Ciclev10031866m.g Citrus clementina HOM05D004120 ORTHO05D004951 3.4e-134 482.3 371 70.9
COL.COLO4_17048 Corchorus olitorius HOM05D004120 ORTHO05D004951 7.7e-134 481.1 301 81.7
Cfa012429 Carpinus fangiana HOM05D004120 ORTHO05D004951 2.9e-133 479.2 369 70.5
PGR031G2717 Punica granatum HOM05D004120 ORTHO05D004951 2.9e-133 479.2 353 71.4
CiPaw.12G063200 Carya illinoinensis HOM05D004120 ORTHO05D004951 3.8e-133 478.8 328 76.8
Nn1g00518 Nelumbo nucifera HOM05D004120 ORTHO05D004951 5.0e-133 478.4 366 71.9
CsaV3_3G001840 Cucumis sativus L. HOM05D004120 ORTHO05D004951 8.5e-133 477.6 379 69.9
Sed0006792 Sechium edule HOM05D004120 ORTHO05D004951 8.5e-133 477.6 375 69.3
Gohir.D08G177300 Gossypium hirsutum HOM05D004120 ORTHO05D004951 1.1e-132 477.2 353 72.8
MELO3C013859.2 Cucumis melo HOM05D004120 ORTHO05D004951 3.2e-132 475.7 378 70.4
ECA240G4620 Erigeron canadensis HOM05D004120 ORTHO05D004951 4.2e-132 475.3 378 69.8
VMungo1215G0016 Vigna mungo HOM05D004120 ORTHO05D004951 4.2e-132 475.3 332 76.5
QL12p005624 Quercus lobata HOM05D004120 ORTHO05D004951 7.2e-132 474.6 332 75.6
Thecc.03G228600 Theobroma cacao HOM05D004120 ORTHO05D004951 7.2e-132 474.6 364 71.7
Ca_24652_v3 Cicer arietinum L. HOM05D004120 ORTHO05D004951 1.2e-131 473.8 367 70.0
Glyma.11G043400 Glycine max HOM05D004120 ORTHO05D004951 1.2e-131 473.8 330 75.5
Phvul.002G007300 Phaseolus vulgaris HOM05D004120 ORTHO05D004951 2.7e-131 472.6 330 75.8
Aqoxy3G02384 Aquilegia oxysepala HOM05D004120 ORTHO05D004951 4.7e-131 471.9 375 68.5
Sabra01G0111800 Salix brachista HOM05D004120 ORTHO05D004951 4.7e-131 471.9 409 64.8
Duzib084G1060 Durio zibethinus HOM05D004120 ORTHO05D004951 6.1e-131 471.5 368 70.4
ClCG10G001730 Citrullus lanatus HOM05D004120 ORTHO05D004951 7.9e-131 471.1 331 76.4
Gohir.A08G156900 Gossypium hirsutum HOM05D004120 ORTHO05D004951 1.0e-130 470.7 353 72.0
Lalb_Chr16g0379111 Lupinus albus HOM05D004120 ORTHO05D004951 1.0e-130 470.7 327 75.2
Lalb_Chr05g0213941 Lupinus albus HOM05D004120 ORTHO05D004951 1.8e-130 469.9 377 68.2
vmacro00332 Vaccinium macrocarpon HOM05D004120 ORTHO05D004951 2.3e-130 469.5 435 62.8
Eucgr.D02191 Eucalyptus grandis HOM05D004120 ORTHO05D004951 3.9e-130 468.8 314 77.4
Prupe.5G038500 Prunus persica HOM05D004120 ORTHO05D004951 1.1e-129 467.2 374 69.3
TWI81G0459 Tripterygium wilfordii HOM05D004120 ORTHO05D004951 1.1e-129 467.2 383 67.6
TPR.G7833 Trifolium pratense HOM05D004120 ORTHO05D004951 4.4e-129 465.3 375 68.5
CANSAT21G2618 Cannabis sativa HOM05D004120 ORTHO05D004951 1.3e-128 463.8 328 75.3
Medtr5g014430 Medicago truncatula HOM05D004120 ORTHO05D004951 1.3e-128 463.8 333 74.2
HanXRQChr03g0084021 Helianthus annuus HOM05D004120 ORTHO05D004951 1.7e-128 463.4 384 65.6
Gorai.004G185700 Gossypium raimondii HOM05D004120 ORTHO05D004951 2.2e-128 463.0 370 68.9
FAN04G1856 Fragaria x ananassa HOM05D004120 ORTHO05D004951 1.1e-127 460.7 325 74.8
FvH4_5g21880 Fragaria vesca HOM05D004120 ORTHO05D004951 1.4e-127 460.3 325 74.5
Lj2g0014948 Lotus japonicus HOM05D004120 ORTHO05D004951 1.8e-127 459.9 329 74.8
FAN18G3415 Fragaria x ananassa HOM05D004120 ORTHO05D004951 3.1e-127 459.1 325 74.2
Cpa.g.sc239.7 Carica papaya HOM05D004120 ORTHO05D004951 1.2e-126 457.2 297 77.8
PSO782G3668 Papaver somniferum HOM05D004120 ORTHO05D004951 1.6e-126 456.8 382 64.1
CDE03G0015 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 5.0e-125 451.8 383 64.5
AL4G31300 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 1.1e-124 450.7 363 65.0
THA.LOC104807951 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 1.1e-124 450.7 321 72.9
unitig_52.g17209 Utricularia gibba HOM05D004120 ORTHO05D004951 1.1e-124 450.7 323 74.0
PSO063G1634 Papaver somniferum HOM05D004120 ORTHO05D004951 1.5e-124 450.3 318 73.9
CARHR129420 Cardamine hirsuta HOM05D004120 ORTHO05D004951 1.9e-124 449.9 342 68.7
RcHm_v2.0_Chr7g0209431 Rosa chinensis HOM05D004120 ORTHO05D004951 2.5e-124 449.5 327 73.1
ATR0049G040 Amborella trichopoda HOM05D004120 ORTHO05D004951 2.1e-123 446.4 385 63.4
Carub.0004s1696 Capsella rubella HOM05D004120 ORTHO05D004951 2.1e-123 446.4 383 62.9
unitig_699.g19781 Utricularia gibba HOM05D004120 ORTHO05D004951 1.8e-122 443.4 331 72.5
Thhalv10016805m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 1.1e-121 440.7 344 67.4
Peaxi162Scf00045g00028 Petunia axillaris HOM05D004120 ORTHO05D004951 4.4e-121 438.7 374 66.8
A03p19500 Brassica napus HOM05D004120 ORTHO05D004951 5.7e-121 438.3 361 64.0
C03p22720 Brassica napus HOM05D004120 ORTHO05D004951 9.7e-121 437.6 361 64.0
BcaC01g05734 Brassica carinata HOM05D004120 ORTHO05D004951 2.2e-120 436.4 314 70.7
BcaB02g09465 Brassica carinata HOM05D004120 ORTHO05D004951 2.8e-120 436.0 317 71.0
BraA03t11203Z Brassica rapa HOM05D004120 ORTHO05D004951 3.7e-120 435.6 316 70.6
THA.LOC104798329 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 4.8e-120 435.3 307 73.0
BraA05t19989Z Brassica rapa HOM05D004120 ORTHO05D004951 8.2e-120 434.5 324 69.4
BcaC02g11630 Brassica carinata HOM05D004120 ORTHO05D004951 1.1e-119 434.1 317 70.3
C04p12920 Brassica napus HOM05D004120 ORTHO05D004951 1.1e-119 434.1 317 70.3
BolC4t22936H Brassica oleracea HOM05D004120 ORTHO05D004951 1.4e-119 433.7 316 69.9
BolC3t14671H Brassica oleracea HOM05D004120 ORTHO05D004951 1.8e-119 433.3 314 70.4
HPP92_022143 Vanilla planifolia HOM05D004120 ORTHO05D004951 4.1e-119 432.2 339 69.6
A05p10510 Brassica napus HOM05D004120 ORTHO05D004951 5.3e-119 431.8 350 65.4
ECA246G0968 Erigeron canadensis HOM05D004120 ORTHO05D004951 7.0e-119 431.4 353 67.7
Sp4g17480 Schrenkiella parvula HOM05D004120 ORTHO05D004951 1.2e-118 430.6 322 69.3
SGA_v2.0_scaffold54G19447 Striga asiatica HOM05D004120 ORTHO05D004951 1.6e-118 430.3 374 63.6
AT2G35260 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 2.0e-118 429.9 344 66.0
HPP92_022140 Vanilla planifolia HOM05D004120 ORTHO05D004951 5.9e-118 428.3 307 72.6
Zm00001eb426630 Zea mays HOM05D004120 ORTHO05D004951 1.7e-117 426.8 282 75.5
AL716U10010 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 5.5e-116 421.8 363 62.3
Solyc08g005010.4 Solanum lycopersicum HOM05D004120 ORTHO05D004951 9.4e-116 421.0 328 69.8
Thhalv10025287m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 2.1e-115 419.9 329 66.9
Carub.0007s2352 Capsella rubella HOM05D004120 ORTHO05D004951 4.7e-115 418.7 304 70.1
Aa31LG6G560 Aethionema arabicum HOM05D004120 ORTHO05D004951 1.0e-114 417.5 334 66.8
Os03g0100030 Oryza sativa ssp. japonica HOM05D004120 ORTHO05D004951 6.8e-114 414.8 282 73.4
Psat2g173200 Pisum sativum HOM05D004120 ORTHO05D004951 8.8e-114 414.5 329 68.7
Sp7g16270 Schrenkiella parvula HOM05D004120 ORTHO05D004951 9.8e-113 411.0 329 65.3
AL7G36690 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 1.7e-112 410.2 281 73.3
AT4G17840 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 4.8e-112 408.7 286 72.4
C07p49190 Brassica napus HOM05D004120 ORTHO05D004951 1.4e-111 407.1 287 71.4
BcaNung00052 Brassica carinata HOM05D004120 ORTHO05D004951 1.8e-111 406.8 279 73.8
A03p50800 Brassica napus HOM05D004120 ORTHO05D004951 7.0e-111 404.8 282 72.0
BraA03t14169Z Brassica rapa HOM05D004120 ORTHO05D004951 7.0e-111 404.8 282 72.0
CARHR224560 Cardamine hirsuta HOM05D004120 ORTHO05D004951 9.1e-111 404.4 342 63.5
A01p09890 Brassica napus HOM05D004120 ORTHO05D004951 1.2e-110 404.1 276 73.6
BcaC09g51598 Brassica carinata HOM05D004120 ORTHO05D004951 2.7e-110 402.9 278 73.0
C01p11590 Brassica napus HOM05D004120 ORTHO05D004951 2.7e-110 402.9 278 73.0
BolC1t01127H Brassica oleracea HOM05D004120 ORTHO05D004951 2.7e-110 402.9 278 73.0
BraA01t00933Z Brassica rapa HOM05D004120 ORTHO05D004951 1.0e-109 401.0 278 72.7
Glyma.01G198500 Glycine max HOM05D004120 ORTHO05D004951 1.3e-109 400.6 286 74.5
Aa31LG9G15290 Aethionema arabicum HOM05D004120 ORTHO05D004951 3.2e-108 396.0 364 59.9
Atru.chr6.1717 Acer truncatum HOM05D004120 ORTHO05D004951 2.0e-102 376.7 286 71.0
BolC7t45429H Brassica oleracea HOM05D004120 ORTHO05D004951 3.0e-98 362.8 252 72.6
SEGI_24472 Sequoiadendron giganteum HOM05D004120 ORTHO05D004951 6.8e-98 361.7 323 61.0
MD06G1033000 Malus domestica HOM05D004120 ORTHO05D004951 2.2e-96 356.7 263 71.9
Nitab4.5_0000804g0170 Nicotiana tabacum HOM05D004120 ORTHO05D004951 8.6e-93 344.7 211 84.4
Duzib205G1837 Durio zibethinus HOM05D004120 ORTHO05D004951 1.3e-88 330.9 298 64.4
Haze_08240 Corylus avellana HOM05D004120 ORTHO05D004951 6.6e-85 318.5 324 59.3
Actinidia28172 Actinidia chinensis HOM05D004120 ORTHO05D004951 4.4e-81 305.8 190 84.7
Mapoly0008s0099 Marchantia polymorpha HOM05D004120 ORTHO05D004951 8.3e-80 301.6 273 55.7
FAN13G1981 Fragaria x ananassa HOM05D004120 ORTHO05D004951 3.2e-79 299.7 224 72.3
FAN08G2335 Fragaria x ananassa HOM05D004120 ORTHO05D004951 2.7e-78 296.6 224 71.9
Pp3c14_25270 Physcomitrium patens HOM05D004120 ORTHO05D004951 2.5e-76 290.0 277 54.9
Pp3c10_10980 Physcomitrium patens HOM05D004120 ORTHO05D004951 5.6e-76 288.9 277 54.9
unitig_744.g24311 Utricularia gibba HOM05D004120 ORTHO05D004951 3.6e-75 286.2 263 61.6
Actinidia25961 Actinidia chinensis HOM05D004120 ORTHO05D004951 8.4e-72 275.0 260 61.5
Nitab4.5_0002539g0020 Nicotiana tabacum HOM05D004120 ORTHO05D004951 7.3e-68 261.9 273 59.0
CDE06G0385 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 6.9e-66 255.4 242 58.3
SMO356G0344 Selaginella moellendorffii HOM05D004120 ORTHO05D004951 3.5e-62 243.0 261 47.1
HanXRQChr05g0153901 Helianthus annuus HOM05D004120 ORTHO05D004951 4.9e-56 222.6 156 75.6
arahy.Tifrunner.gnm1.ann1.K2V32T Arachis hypogaea HOM05D004120 ORTHO05D004951 3.0e-53 213.4 176 64.2
arahy.Tifrunner.gnm1.ann1.7CR4HZ Arachis hypogaea HOM05D004120 ORTHO05D004951 8.7e-53 211.8 176 64.2
arahy.Tifrunner.gnm1.ann1.WRTU1C Arachis hypogaea HOM05D004120 ORTHO05D004951 2.1e-51 207.2 176 63.1
arahy.Tifrunner.gnm1.ann1.3C7WBJ Arachis hypogaea HOM05D004120 ORTHO05D004951 2.8e-51 206.8 132 78.8
arahy.Tifrunner.gnm1.ann1.B3D4NA Arachis hypogaea HOM05D004120 ORTHO05D004951 1.8e-42 177.6 168 57.1
arahy.Tifrunner.gnm1.ann1.AE9Z3E Arachis hypogaea HOM05D004120 ORTHO05D004951 2.4e-42 177.2 106 80.2
arahy.Tifrunner.gnm1.ann1.4R7L3N Arachis hypogaea HOM05D004120 ORTHO05D004951 2.6e-41 173.7 99 82.8
arahy.Tifrunner.gnm1.ann1.E125G1 Arachis hypogaea HOM05D004120 ORTHO05D004951 8.5e-32 142.1 74 86.5
arahy.Tifrunner.gnm1.ann1.BQ9W36 Arachis hypogaea HOM05D004120 ORTHO05D004951 5.5e-31 139.4 74 83.8
AagrBONN_evm.TU.Sc2ySwM_117.2801 Anthoceros agrestis HOM05D010715 ORTHO05D004951 7.2e-31 139.0 157 48.4
arahy.Tifrunner.gnm1.ann1.U1DJ88 Arachis hypogaea HOM05D004120 ORTHO05D007788 1.6e-30 137.9 77 83.1
Aa31sc618G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 8.2e-27 125.6 153 51.6
arahy.Tifrunner.gnm1.ann1.H82JQN Arachis hypogaea HOM05D004120 ORTHO05D021518 1.1e-26 125.2 76 76.3
arahy.Tifrunner.gnm1.ann1.L0EJKI Arachis hypogaea HOM05D004120 ORTHO05D004951 3.1e-26 123.6 75 74.7
arahy.Tifrunner.gnm1.ann1.RCE8PR Arachis hypogaea HOM05D004120 ORTHO05D004951 5.3e-26 122.9 131 55.7
AagrBONN_evm.TU.Sc2ySwM_117.3803 Anthoceros agrestis HOM05D004120 ORTHO05D004951 5.0e-24 116.3 102 52.9
EL10Ac1g01819 Beta vulgaris HOM05D004120 ORTHO05D023811 7.9e-22 109.0 69 81.2
RcHm_v2.0_Chr6g0284251 Rosa chinensis HOM05D004120 ORTHO05D004951 5.7e-20 102.8 72 66.7
CBR_g56906 Chara braunii HOM05D004120 ORTHO05D004951 2.2e-19 100.9 113 43.4
CBR_g19263 Chara braunii HOM05D004120 ORTHO05D004951 1.2e-17 95.1 140 40.7
AUR62039713 Chenopodium quinoa HOM05D004317 ORTHO05D005031 1.2e-17 95.1 55 83.6
CAN.G36.13 Capsicum annuum HOM05D004120 ORTHO05D004951 5.5e-15 86.3 53 75.5
arahy.Tifrunner.gnm1.ann1.JI8VIY Arachis hypogaea HOM05D004120 ORTHO05D021518 4.1e-10 70.1 104 45.2
arahy.Tifrunner.gnm1.ann1.NR0HVE Arachis hypogaea HOM05D004120 ORTHO05D021518 4.1e-10 70.1 56 71.4
A01p32880 Brassica napus HOM05D004120 ORTHO05D023811 7.2e-07 59.3 28 96.4
A06p35780 Brassica napus HOM05D004120 ORTHO05D023811 7.2e-07 59.3 28 96.4
BraA01t03409Z Brassica rapa HOM05D004120 ORTHO05D023811 7.2e-07 59.3 28 96.4
Aa31sc185G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 1.6e-06 58.2 91 41.8
BraA06t26504Z Brassica rapa HOM05D004120 ORTHO05D033838 8.0e-06 55.8 29 86.2


User provided reference genes

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