Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.12g053550 Amaranthus hybridus HOM05D005485 ORTHO05D007343 0.0e+00 1218.0 592 100.0
Ah.12g053500 Amaranthus hybridus HOM05D005485 ORTHO05D007343 5.6e-187 658.3 591 58.2
AUR62044278 Chenopodium quinoa HOM05D005485 ORTHO05D007343 3.9e-132 476.1 593 45.0
Ah.14g079940 Amaranthus hybridus HOM05D005485 ORTHO05D007343 2.4e-129 466.8 599 46.2
Ah.14g079930 Amaranthus hybridus HOM05D005485 ORTHO05D007343 7.0e-129 465.3 624 45.2
Ah.12g053520 Amaranthus hybridus HOM05D005485 ORTHO05D007343 8.8e-116 421.8 225 88.9
EL10Ac3g05678 Beta vulgaris HOM05D005485 ORTHO05D007343 1.6e-101 374.4 593 37.9
EL10Ac6g15588 Beta vulgaris HOM05D005485 ORTHO05D007343 9.8e-99 365.2 424 48.8
Ah.07g198250 Amaranthus hybridus HOM05D005485 ORTHO05D007343 7.3e-94 349.0 368 46.7
AUR62035968 Chenopodium quinoa HOM05D005485 ORTHO05D007343 2.0e-91 340.9 367 48.8
Ah.03g144460 Amaranthus hybridus HOM05D005485 ORTHO05D007343 2.9e-90 337.0 615 35.8
AUR62043968 Chenopodium quinoa HOM05D005485 ORTHO05D007343 1.7e-82 311.2 349 47.0
Sc16g0006520 Simmondsia chinensis HOM05D005485 ORTHO05D007343 6.0e-80 302.8 602 33.6
AUR62034285 Chenopodium quinoa HOM05D005485 ORTHO05D007343 2.5e-78 297.4 608 33.6
AUR62007546 Chenopodium quinoa HOM05D005485 ORTHO05D007343 4.3e-78 296.6 371 48.8
Ah.07g198280 Amaranthus hybridus HOM05D005485 ORTHO05D007343 1.6e-77 294.7 297 48.1
Ah.02g116590 Amaranthus hybridus HOM05D005485 ORTHO05D007343 2.6e-75 287.3 424 38.0
Ah.11g046570 Amaranthus hybridus HOM05D005485 ORTHO05D007343 9.2e-73 278.9 596 35.9
EL10Ac4g08009 Beta vulgaris HOM05D005485 ORTHO05D007343 5.6e-70 269.6 602 31.6
Ah.02g116550 Amaranthus hybridus HOM05D005485 ORTHO05D007343 9.6e-70 268.9 587 33.6
Ah.02g116580 Amaranthus hybridus HOM05D005485 ORTHO05D007343 3.6e-69 266.9 571 33.1
Ah.12g053510 Amaranthus hybridus HOM05D005485 ORTHO05D007343 4.7e-69 266.5 222 67.6
EL10Ac3g06092 Beta vulgaris HOM05D005485 ORTHO05D007343 8.9e-68 262.3 262 51.5
AUR62015643 Chenopodium quinoa HOM05D005485 ORTHO05D026998 7.6e-67 259.2 776 28.6
Sc03g0008990 Simmondsia chinensis HOM05D005485 ORTHO05D007343 8.4e-66 255.8 598 30.8
Sc03g0009010 Simmondsia chinensis HOM05D005485 ORTHO05D007343 4.2e-65 253.4 601 32.1
Sc03g0008940 Simmondsia chinensis HOM05D005485 ORTHO05D007343 7.8e-64 249.2 598 30.3
AUR62032022 Chenopodium quinoa HOM05D005485 ORTHO05D007343 3.3e-62 243.8 362 37.8
EL10Ac6g15586 Beta vulgaris HOM05D005485 ORTHO05D007343 7.3e-62 242.7 171 64.3
Hund23311 Selenicereus undatus HOM05D005485 ORTHO05D007343 1.6e-61 241.5 627 30.6
Ah.06g182180 Amaranthus hybridus HOM05D005485 ORTHO05D007343 4.0e-60 236.9 795 27.2
AUR62035401 Chenopodium quinoa HOM05D005485 ORTHO05D007343 2.0e-59 234.6 683 28.6
EL10Ac4g09247 Beta vulgaris HOM05D005485 ORTHO05D007343 7.6e-59 232.6 443 33.9
Ah.06g183040 Amaranthus hybridus HOM05D005485 ORTHO05D007343 4.9e-58 229.9 611 28.8
EL10Ac4g07712 Beta vulgaris HOM05D005485 ORTHO05D007343 8.4e-58 229.2 791 27.4
EL10Ac4g08005 Beta vulgaris HOM05D005485 ORTHO05D007343 1.1e-57 228.8 601 29.1
AUR62015844 Chenopodium quinoa HOM05D005485 ORTHO05D007343 2.4e-57 227.6 779 25.8
Hund23309 Selenicereus undatus HOM05D005485 ORTHO05D007343 2.4e-57 227.6 639 29.3
EL10Ac4g07717 Beta vulgaris HOM05D005485 ORTHO05D007343 3.5e-56 223.8 805 27.0
AUR62015889 Chenopodium quinoa HOM05D005485 ORTHO05D007343 1.4e-52 211.8 742 28.0
AUR62020371 Chenopodium quinoa HOM05D005485 ORTHO05D007343 2.0e-51 208.0 808 24.6
Hund23316 Selenicereus undatus HOM05D005485 ORTHO05D007343 3.8e-50 203.8 626 28.1
Ah.07g199850 Amaranthus hybridus HOM05D005485 ORTHO05D007343 1.9e-49 201.4 165 57.0
Sc03g0009030 Simmondsia chinensis HOM05D005485 ORTHO05D007343 2.4e-49 201.1 410 32.0
AUR62020370 Chenopodium quinoa HOM05D005485 ORTHO05D007343 5.5e-49 199.9 712 25.3
AUR62000944 Chenopodium quinoa HOM05D005485 ORTHO05D007343 2.7e-48 197.6 577 26.3
AUR62020556 Chenopodium quinoa HOM05D005485 ORTHO05D026998 4.3e-46 190.3 588 29.9
AUR62020486 Chenopodium quinoa HOM05D005485 ORTHO05D007343 5.6e-46 189.9 795 23.8
AUR62044256 Chenopodium quinoa HOM05D005485 ORTHO05D007343 1.4e-44 185.3 350 34.0
Ah.14g079970 Amaranthus hybridus HOM05D005485 ORTHO05D007343 6.9e-44 183.0 167 55.7
Ah.06g182120 Amaranthus hybridus HOM05D005485 ORTHO05D007343 7.6e-43 179.5 457 30.6
EL10Ac4g07974 Beta vulgaris HOM05D005485 ORTHO05D026998 1.0e-42 179.1 363 30.6
Ah.03g136690 Amaranthus hybridus HOM05D005485 ORTHO05D007343 1.3e-42 178.7 477 30.4
AUR62001098 Chenopodium quinoa HOM05D005485 ORTHO05D007343 2.5e-41 174.5 603 26.2
Sc16g0006460 Simmondsia chinensis HOM05D005485 ORTHO05D007343 1.6e-40 171.8 273 38.1
AUR62035969 Chenopodium quinoa HOM05D005485 ORTHO05D007343 4.6e-40 170.2 226 46.5
AUR62005063 Chenopodium quinoa HOM05D005485 ORTHO05D007343 7.9e-40 169.5 497 27.8
Hund23314 Selenicereus undatus HOM05D005485 ORTHO05D007343 1.8e-39 168.3 557 27.1
Ah.12g053540 Amaranthus hybridus HOM05D005485 ORTHO05D007343 2.3e-39 167.9 159 53.5
AUR62022538 Chenopodium quinoa HOM05D005485 ORTHO05D007343 5.1e-39 166.8 171 46.2
AUR62029296 Chenopodium quinoa HOM05D005485 ORTHO05D007343 5.1e-39 166.8 608 25.8
Ah.14g080010 Amaranthus hybridus HOM05D005485 ORTHO05D007343 3.3e-38 164.1 256 37.5
EL10Ac3g07381 Beta vulgaris HOM05D005485 ORTHO05D007343 4.3e-38 163.7 759 23.8
Hund21258 Selenicereus undatus HOM05D005485 ORTHO05D007343 7.4e-38 162.9 353 30.3
Hund21254 Selenicereus undatus HOM05D005485 ORTHO05D007343 2.8e-37 161.0 347 30.3
Hund23312 Selenicereus undatus HOM05D005485 ORTHO05D007343 4.8e-37 160.2 601 27.6
EL10Ac4g07973 Beta vulgaris HOM05D005485 ORTHO05D026998 2.4e-36 157.9 354 34.5
AUR62038097 Chenopodium quinoa HOM05D005485 ORTHO05D007343 7.6e-35 152.9 340 31.2
AUR62039544 Chenopodium quinoa HOM05D005485 ORTHO05D007343 7.6e-35 152.9 226 43.8
AUR62043969 Chenopodium quinoa HOM05D005485 ORTHO05D007343 1.0e-34 152.5 230 44.8
Ah.16g108490 Amaranthus hybridus HOM05D005485 ORTHO05D007343 2.2e-34 151.4 384 29.2
AUR62010290 Chenopodium quinoa HOM05D005485 ORTHO05D007343 2.9e-34 151.0 535 23.6
Sc16g0006440 Simmondsia chinensis HOM05D005485 ORTHO05D007343 8.4e-34 149.4 181 42.5
Hund21259 Selenicereus undatus HOM05D005485 ORTHO05D007343 1.9e-33 148.3 351 28.5
Sc16g0006400 Simmondsia chinensis HOM05D005485 ORTHO05D007343 3.2e-33 147.5 539 26.2
AUR62044254 Chenopodium quinoa HOM05D005485 ORTHO05D007343 5.5e-33 146.7 226 45.1
Sc16g0006490 Simmondsia chinensis HOM05D005485 ORTHO05D007343 1.2e-32 145.6 531 23.4
EL10Ac4g07980 Beta vulgaris HOM05D005485 ORTHO05D007343 1.3e-31 142.1 435 28.0
AUR62043971 Chenopodium quinoa HOM05D005485 ORTHO05D007343 1.3e-31 142.1 350 29.4
AUR62020336 Chenopodium quinoa HOM05D003198 ORTHO05D003716 1.9e-30 138.3 374 26.2
Sc16g0006420 Simmondsia chinensis HOM05D005485 ORTHO05D007343 2.5e-30 137.9 397 27.5
AUR62020365 Chenopodium quinoa HOM05D005485 ORTHO05D007343 4.3e-30 137.1 360 27.5
Hund23385 Selenicereus undatus HOM05D005485 ORTHO05D007343 1.6e-29 135.2 393 29.5
AUR62001099 Chenopodium quinoa HOM05D005485 ORTHO05D007343 5.3e-28 130.2 270 30.0
AUR62031850 Chenopodium quinoa HOM05D005485 ORTHO05D007343 6.9e-28 129.8 396 25.0
EL10Ac4g07981 Beta vulgaris HOM05D005485 ORTHO05D007343 5.9e-27 126.7 153 41.2
Ah.12g062530 Amaranthus hybridus HOM05D000264 ORTHO05D000152 1.7e-26 125.2 365 27.7
AUR62014162 Chenopodium quinoa HOM05D005485 ORTHO05D007343 2.2e-26 124.8 270 35.2
AUR62020319 Chenopodium quinoa HOM05D005485 ORTHO05D007343 2.2e-26 124.8 377 26.5
Sc16g0006550 Simmondsia chinensis HOM05D005485 ORTHO05D007343 2.3e-23 114.8 157 37.6
EL10Ac4g07978 Beta vulgaris HOM05D005485 ORTHO05D007343 6.7e-23 113.2 155 37.4
AUR62010291 Chenopodium quinoa HOM05D005485 ORTHO05D007343 2.2e-21 108.2 215 35.8
Hund12186 Selenicereus undatus HOM05D005485 ORTHO05D007343 8.2e-21 106.3 264 31.1
AUR62020317 Chenopodium quinoa HOM05D005485 ORTHO05D007343 2.0e-19 101.7 288 29.2
Hund23383 Selenicereus undatus HOM05D005485 ORTHO05D007343 1.0e-18 99.4 269 31.2
AUR62026676 Chenopodium quinoa HOM05D005485 ORTHO05D007343 2.2e-18 98.2 285 26.0
AUR62035354 Chenopodium quinoa HOM05D000264 ORTHO05D000152 3.8e-18 97.4 414 25.1
AUR62020487 Chenopodium quinoa HOM05D005485 ORTHO05D007343 1.2e-16 92.4 132 34.1
Sc05g0005310 Simmondsia chinensis HOM05D005485 ORTHO05D007343 1.2e-16 92.4 235 30.2
Hund30583 Selenicereus undatus HOM05D005485 ORTHO05D007343 4.7e-16 90.5 116 33.6
Rhsim04G0029100 Rhododendron simsii HOM05D000264 ORTHO05D000152 6.1e-16 90.1 270 28.1
Hund14197 Selenicereus undatus HOM05D005485 ORTHO05D007343 7.9e-16 89.7 125 33.6
Rhsim04G0028000 Rhododendron simsii HOM05D000264 ORTHO05D009284 3.9e-15 87.4 256 28.9
RhsimUnG0230300 Rhododendron simsii HOM05D000264 ORTHO05D000152 3.9e-15 87.4 249 27.7
EL10Ac4g07975 Beta vulgaris HOM05D005485 ORTHO05D007343 6.7e-15 86.7 189 36.0
Rhsim07G0250900 Rhododendron simsii HOM05D000264 ORTHO05D000152 6.7e-15 86.7 257 28.8
CARHR078810 Cardamine hirsuta HOM05D000264 ORTHO05D000152 1.1e-14 85.9 266 29.3
AUR62025713 Chenopodium quinoa HOM05D007624 ORTHO05D010285 2.6e-14 84.7 317 26.2
AUR62001285 Chenopodium quinoa HOM05D007624 ORTHO05D010285 5.7e-14 83.6 318 27.7
EL10Ac3g06720 Beta vulgaris HOM05D000264 ORTHO05D000152 1.3e-13 82.4 264 29.5
Eucgr.D01529 Eucalyptus grandis HOM05D000264 ORTHO05D000152 3.7e-13 80.9 309 28.2
RhsimUnG0050700 Rhododendron simsii HOM05D000264 ORTHO05D000152 3.7e-13 80.9 244 28.3
Sc03g0009060 Simmondsia chinensis HOM05D005485 ORTHO05D007343 4.8e-13 80.5 112 37.5
EL10Ac2g04709 Beta vulgaris HOM05D007624 ORTHO05D010285 1.4e-12 79.0 255 27.8
AUR62020484 Chenopodium quinoa HOM05D005485 ORTHO05D007343 1.4e-12 79.0 198 31.8
RhsimUnG0050600 Rhododendron simsii HOM05D000264 ORTHO05D000152 1.4e-12 79.0 286 25.5
FvH4_1g18590 Fragaria vesca HOM05D000264 ORTHO05D000152 4.1e-12 77.4 258 28.3
FAN19G0588 Fragaria x ananassa HOM05D000264 ORTHO05D000152 4.1e-12 77.4 258 28.3
Eucgr.D01532 Eucalyptus grandis HOM05D000264 ORTHO05D000152 3.5e-11 74.3 324 26.2
BolC3t16390H Brassica oleracea HOM05D000264 ORTHO05D000152 4.5e-11 73.9 311 27.3
AL3G14640 Arabidopsis lyrata HOM05D000264 ORTHO05D000152 7.7e-11 73.2 367 25.9
AUR62004787 Chenopodium quinoa HOM05D005485 ORTHO05D007343 7.7e-11 73.2 220 25.9
Eucgr.D01523 Eucalyptus grandis HOM05D000264 ORTHO05D000152 1.7e-10 72.0 256 27.3
RcHm_v2.0_Chr2g0109381 Rosa chinensis HOM05D000264 ORTHO05D000152 2.9e-10 71.2 275 23.6
Hund06834 Selenicereus undatus HOM05D007624 ORTHO05D010285 2.9e-10 71.2 309 22.7
Eucgr.D01254 Eucalyptus grandis HOM05D000264 ORTHO05D000152 3.8e-10 70.9 256 26.2
BcaB04g21355 Brassica carinata HOM05D000264 ORTHO05D000152 5.0e-10 70.5 321 23.4
FAN21G2481 Fragaria x ananassa HOM05D000264 ORTHO05D000152 5.0e-10 70.5 280 25.7
AUR62035892 Chenopodium quinoa HOM05D000264 ORTHO05D000152 6.5e-10 70.1 414 22.2
EL10Ac2g02864 Beta vulgaris HOM05D007624 ORTHO05D010285 1.5e-09 68.9 339 21.8
C03p41010 Brassica napus HOM05D000264 ORTHO05D000152 1.5e-09 68.9 311 27.3
BolC3t16381H Brassica oleracea HOM05D000264 ORTHO05D000152 1.5e-09 68.9 312 27.2
FvH4_3g16160 Fragaria vesca HOM05D000264 ORTHO05D000152 1.5e-09 68.9 280 25.4
Carub.0003s0376 Capsella rubella HOM05D000264 ORTHO05D000152 1.9e-09 68.6 258 26.4
AUR62017633 Chenopodium quinoa HOM05D007624 ORTHO05D000152 1.9e-09 68.6 148 29.7
AUR62025721 Chenopodium quinoa HOM05D007624 ORTHO05D010285 2.5e-09 68.2 254 24.0
FAN28G1654 Fragaria x ananassa HOM05D000264 ORTHO05D000152 2.5e-09 68.2 258 26.7
Prupe.4G145100 Prunus persica HOM05D000264 ORTHO05D000152 2.5e-09 68.2 384 23.7
Ah.03g136680 Amaranthus hybridus HOM05D005485 ORTHO05D007343 3.2e-09 67.8 70 44.3
Eucgr.A00170 Eucalyptus grandis HOM05D000264 ORTHO05D000152 3.2e-09 67.8 347 23.9
Hund23310 Selenicereus undatus HOM05D000185 ORTHO05D000105 4.2e-09 67.4 172 31.4
Eucgr.D01257 Eucalyptus grandis HOM05D000264 ORTHO05D000152 7.2e-09 66.6 263 27.0
AUR62037233 Chenopodium quinoa HOM05D007624 ORTHO05D010285 9.4e-09 66.2 319 23.8
Ah.16g108480 Amaranthus hybridus HOM05D005485 ORTHO05D007343 2.1e-08 65.1 177 30.5
THA.LOC104802840 Tarenaya hassleriana HOM05D000264 ORTHO05D000152 2.7e-08 64.7 248 25.8
EL10Ac4g07977 Beta vulgaris HOM05D005485 ORTHO05D007343 3.6e-08 64.3 191 27.7
Hund05634 Selenicereus undatus HOM05D007624 ORTHO05D010285 3.6e-08 64.3 245 26.5
FAN26G1698 Fragaria x ananassa HOM05D000264 ORTHO05D000152 4.7e-08 63.9 224 28.6
BcaC09g47787 Brassica carinata HOM05D000264 ORTHO05D000152 8.0e-08 63.2 259 26.3
Eucgr.D01522 Eucalyptus grandis HOM05D000264 ORTHO05D000152 1.0e-07 62.8 190 26.3
Zm00001eb323050 Zea mays HOM05D000264 ORTHO05D000152 1.0e-07 62.8 188 26.1
A03p33710 Brassica napus HOM05D000264 ORTHO05D000152 2.3e-07 61.6 310 26.1
BolC1t05734H Brassica oleracea HOM05D000264 ORTHO05D000152 2.3e-07 61.6 416 21.2
Hund05641 Selenicereus undatus HOM05D007624 ORTHO05D010285 2.3e-07 61.6 248 25.4
AUR62021781 Chenopodium quinoa HOM05D007624 ORTHO05D010285 5.2e-07 60.5 317 24.0
AUR62020485 Chenopodium quinoa HOM05D005485 ORTHO05D007343 6.7e-07 60.1 161 25.5
THA.LOC104803112 Tarenaya hassleriana HOM05D000264 ORTHO05D000152 6.7e-07 60.1 198 28.3
Eucgr.I00529 Eucalyptus grandis HOM05D000264 ORTHO05D000152 8.8e-07 59.7 269 23.8
Eucgr.D01235 Eucalyptus grandis HOM05D000264 ORTHO05D000152 1.1e-06 59.3 258 24.4
Hund05635 Selenicereus undatus HOM05D007624 ORTHO05D010285 1.1e-06 59.3 245 24.5
Eucgr.D01270 Eucalyptus grandis HOM05D000264 ORTHO05D000152 2.6e-06 58.2 295 25.1
CsaV3_2G003910 Cucumis sativus L. HOM05D000264 ORTHO05D000152 4.4e-06 57.4 97 32.0
BcaB01g01946 Brassica carinata HOM05D000264 ORTHO05D000152 5.7e-06 57.0 301 21.9
CARHR078800 Cardamine hirsuta HOM05D000264 ORTHO05D000152 9.7e-06 56.2 259 26.3


User provided reference genes

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