Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.12g053410 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.1e-102 376.7 209 100.0
Ah.12g055680 Amaranthus hybridus HOM05D004174 ORTHO05D004624 7.2e-97 357.5 236 87.7
Ah.12g053390 Amaranthus hybridus HOM05D004174 ORTHO05D004624 2.5e-57 226.1 237 58.2
Ah.05g171270 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.6e-32 142.5 162 53.7
Ah.01g013260 Amaranthus hybridus HOM05D000289 ORTHO05D000208 2.7e-11 73.2 49 77.6
Ah.02g124290 Amaranthus hybridus HOM05D004174 ORTHO05D004624 6.1e-11 72.0 38 86.8
Ah.14g080300 Amaranthus hybridus HOM05D004174 ORTHO05D004624 6.1e-11 72.0 38 86.8
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 1.8e-10 70.5 38 84.2
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 1.8e-10 70.5 38 84.2
AT5G20070 Arabidopsis thaliana HOM05D004174 ORTHO05D004624 1.8e-10 70.5 38 84.2
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 1.8e-10 70.5 38 84.2
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 1.8e-10 70.5 38 84.2
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 1.8e-10 70.5 38 84.2
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 1.8e-10 70.5 38 84.2
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 1.8e-10 70.5 38 84.2
Carub.0006s1845 Capsella rubella HOM05D004174 ORTHO05D004624 1.8e-10 70.5 38 84.2
CARHR192760 Cardamine hirsuta HOM05D004174 ORTHO05D004624 1.8e-10 70.5 38 84.2
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 1.8e-10 70.5 38 84.2
Sp6g24340 Schrenkiella parvula HOM05D004174 ORTHO05D004624 1.8e-10 70.5 38 84.2
Dinv36548 Davidia involucrata HOM05D004174 ORTHO05D004624 5.1e-10 68.9 38 81.6
Hma1.2p1_0665F.1_g199150 Hydrangea macrophylla HOM05D004174 ORTHO05D004624 5.1e-10 68.9 38 81.6
Hund09144 Selenicereus undatus HOM05D004174 ORTHO05D004624 5.1e-10 68.9 38 81.6
THA.LOC104811038 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 5.1e-10 68.9 38 81.6
Thecc.09G123000 Theobroma cacao HOM05D004174 ORTHO05D004624 5.1e-10 68.9 38 81.6
TWI34G0924 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 5.1e-10 68.9 38 81.6
GSVIVG01015501001 Vitis vinifera HOM05D004174 ORTHO05D004624 5.1e-10 68.9 38 81.6
Atru.chr7.1197 Acer truncatum HOM05D004174 ORTHO05D004624 6.7e-10 68.6 38 81.6
EL10Ac8g18616 Beta vulgaris HOM05D004174 ORTHO05D004624 6.7e-10 68.6 38 81.6
AUR62011109 Chenopodium quinoa HOM05D004174 ORTHO05D004624 6.7e-10 68.6 70 57.1
vmacro06177 Vaccinium macrocarpon HOM05D004174 ORTHO05D004624 6.7e-10 68.6 38 81.6
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 8.7e-10 68.2 35 85.7
Lj1g0010752 Lotus japonicus HOM05D004174 ORTHO05D004624 8.7e-10 68.2 38 81.6
HPP92_000685 Vanilla planifolia HOM05D004174 ORTHO05D004624 8.7e-10 68.2 38 81.6
Zm00001eb377430 Zea mays HOM05D004174 ORTHO05D004624 8.7e-10 68.2 38 81.6
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 1.1e-09 67.8 38 78.9
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 1.1e-09 67.8 38 78.9
A02p06020 Brassica napus HOM05D004174 ORTHO05D004624 1.1e-09 67.8 38 78.9
BNapus_Darmor_BZH_scaffold_38p01820 Brassica napus HOM05D004174 ORTHO05D004624 1.1e-09 67.8 38 78.9
BraA02t05553Z Brassica rapa HOM05D004174 ORTHO05D004624 1.1e-09 67.8 38 78.9
Cfa003346 Carpinus fangiana HOM05D004174 ORTHO05D004624 1.1e-09 67.8 38 78.9
ClCG11G002850 Citrullus lanatus HOM05D004174 ORTHO05D004624 1.1e-09 67.8 38 78.9
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 1.1e-09 67.8 38 78.9
MELO3C004525.2 Cucumis melo HOM05D004174 ORTHO05D004624 1.1e-09 67.8 38 78.9
CsaV3_2G002690 Cucumis sativus L. HOM05D004174 ORTHO05D004624 1.1e-09 67.8 38 78.9
Dinv41532 Davidia involucrata HOM05D004174 ORTHO05D004624 1.1e-09 67.8 38 78.9
FvH4_1g03600 Fragaria vesca HOM05D004174 ORTHO05D004624 1.1e-09 67.8 38 78.9
FAN19G0954 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.1e-09 67.8 38 78.9
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.1e-09 67.8 38 78.9
FAN26G0665 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.1e-09 67.8 38 78.9
FAN26G3217 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.1e-09 67.8 38 78.9
Medtr2g054680 Medicago truncatula HOM05D004174 ORTHO05D004624 1.1e-09 67.8 38 78.9
Nn8g39387 Nelumbo nucifera HOM05D004174 ORTHO05D004624 1.1e-09 67.8 38 78.9
Os06g0141166 Oryza sativa ssp. japonica HOM05D004174 ORTHO05D004624 1.1e-09 67.8 38 78.9
PSO170G6838 Papaver somniferum HOM05D004174 ORTHO05D004624 1.1e-09 67.8 38 78.9
PSO455G0049 Papaver somniferum HOM05D004174 ORTHO05D004624 1.1e-09 67.8 38 78.9
Psat1g025760 Pisum sativum HOM05D004174 ORTHO05D004624 1.1e-09 67.8 38 78.9
RcHm_v2.0_Chr2g0089131 Rosa chinensis HOM05D004174 ORTHO05D004624 1.1e-09 67.8 38 78.9
Sc18g0000710 Simmondsia chinensis HOM05D004174 ORTHO05D004624 1.1e-09 67.8 38 78.9
TAR383G0558 Trochodendron aralioides HOM05D004174 ORTHO05D004624 1.1e-09 67.8 38 78.9
Actinidia26403 Actinidia chinensis HOM05D004174 ORTHO05D004624 1.5e-09 67.4 38 78.9
Aa31LG8G2170 Aethionema arabicum HOM05D004174 ORTHO05D004624 1.5e-09 67.4 38 78.9
CiPaw.03G241700 Carya illinoinensis HOM05D004174 ORTHO05D004624 1.5e-09 67.4 38 78.9
Haze_25614 Corylus avellana HOM05D004174 ORTHO05D004624 1.5e-09 67.4 38 78.9
Glyma.06G216700 Glycine max HOM05D004174 ORTHO05D004624 1.5e-09 67.4 38 78.9
Gohir.A13G199200 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.5e-09 67.4 38 78.9
Gohir.D13G204700 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.5e-09 67.4 38 78.9
Gorai.013G233600 Gossypium raimondii HOM05D004174 ORTHO05D004624 1.5e-09 67.4 38 78.9
Potri.006G154200 Populus trichocarpa HOM05D004174 ORTHO05D004624 1.5e-09 67.4 38 78.9
Prupe.7G239600 Prunus persica HOM05D004174 ORTHO05D004624 1.5e-09 67.4 38 78.9
Rhsim03G0246500 Rhododendron simsii HOM05D004174 ORTHO05D004624 1.5e-09 67.4 38 78.9
THA.LOC104799651 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 1.5e-09 67.4 38 78.9
TWI32G1270 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 1.5e-09 67.4 38 78.9
COL.COLO4_05761 Corchorus olitorius HOM05D004174 ORTHO05D004624 1.9e-09 67.0 38 76.3
MD02G1035400 Malus domestica HOM05D004174 ORTHO05D004624 1.9e-09 67.0 38 78.9
MD02G1035600 Malus domestica HOM05D004174 ORTHO05D004624 1.9e-09 67.0 38 78.9
Manes.06G050000 Manihot esculenta HOM05D004174 ORTHO05D004624 1.9e-09 67.0 38 78.9
HPP92_000661 Vanilla planifolia HOM05D004174 ORTHO05D004624 1.9e-09 67.0 38 78.9
CSS0035220 Camellia sinensis var. sinensis HOM05D004174 ORTHO05D004624 2.5e-09 66.6 38 76.3
Ca_03159_v3 Cicer arietinum L. HOM05D004174 ORTHO05D004624 2.5e-09 66.6 38 76.3
Ciclev10008313m.g Citrus clementina HOM05D004174 ORTHO05D004624 2.5e-09 66.6 38 76.3
DCAR_017828 Daucus carota HOM05D004174 ORTHO05D004624 2.5e-09 66.6 38 76.3
FAN28G1355 Fragaria x ananassa HOM05D004174 ORTHO05D004624 2.5e-09 66.6 38 76.3
Lalb_Chr23g0275331 Lupinus albus HOM05D004174 ORTHO05D004624 2.5e-09 66.6 38 78.9
MD00G1107300 Malus domestica HOM05D004174 ORTHO05D004624 2.5e-09 66.6 38 78.9
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 2.5e-09 66.6 38 78.9
Sed0019119 Sechium edule HOM05D004174 ORTHO05D004624 2.5e-09 66.6 38 76.3
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 2.5e-09 66.6 38 76.3
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 2.5e-09 66.6 38 76.3
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 2.5e-09 66.6 38 76.3
ATR1156G006 Amborella trichopoda HOM05D004174 ORTHO05D004624 3.3e-09 66.2 38 76.3
CDE02G3646 Ceratophyllum demersum HOM05D004174 ORTHO05D004624 3.3e-09 66.2 38 76.3
Duzib150G0384 Durio zibethinus HOM05D004174 ORTHO05D004624 3.3e-09 66.2 38 73.7
Migut.J01169 Erythranthe guttata HOM05D004174 ORTHO05D004624 3.3e-09 66.2 38 76.3
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 3.3e-09 66.2 38 76.3
SGA_v2.0_scaffold229G43324 Striga asiatica HOM05D004174 ORTHO05D004624 3.3e-09 66.2 38 76.3
TPR.G31095 Trifolium pratense HOM05D004174 ORTHO05D004624 3.3e-09 66.2 38 76.3
CANSAT11G0280 Cannabis sativa HOM05D004174 ORTHO05D004624 4.3e-09 65.9 38 78.9
AUR62033476 Chenopodium quinoa HOM05D004174 ORTHO05D004624 4.3e-09 65.9 38 76.3
COL.COLO4_17917 Corchorus olitorius HOM05D004174 ORTHO05D004624 4.3e-09 65.9 38 76.3
HanXRQChr06g0180241 Helianthus annuus HOM05D004174 ORTHO05D004624 4.3e-09 65.9 38 73.7
HanXRQChr12g0368841 Helianthus annuus HOM05D004174 ORTHO05D004624 4.3e-09 65.9 38 73.7
Lsat_1_v5_gn_8_58900 Lactuca sativa HOM05D004174 ORTHO05D004624 4.3e-09 65.9 38 73.7
Potri.018G070400 Populus trichocarpa HOM05D004174 ORTHO05D004624 4.3e-09 65.9 38 76.3
Sabra18G0061500 Salix brachista HOM05D004174 ORTHO05D004624 4.3e-09 65.9 38 76.3
ClCG06G010920 Citrullus lanatus HOM05D004174 ORTHO05D004624 5.7e-09 65.5 38 76.3
MELO3C026643.2 Cucumis melo HOM05D004174 ORTHO05D004624 5.7e-09 65.5 38 76.3
MBI04_g24208_MAGBIO Magnolia biondii HOM05D004174 ORTHO05D004624 5.7e-09 65.5 38 76.3
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 7.4e-09 65.1 38 73.7
Sed0008859 Sechium edule HOM05D004174 ORTHO05D004624 9.7e-09 64.7 38 76.3
Actinidia07434 Actinidia chinensis HOM05D004174 ORTHO05D004624 1.3e-08 64.3 38 76.3
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 1.3e-08 64.3 38 73.7
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 1.3e-08 64.3 38 71.1
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 1.3e-08 64.3 38 73.7
QL02p087765 Quercus lobata HOM05D004174 ORTHO05D004624 1.3e-08 64.3 38 73.7
VMungo1309G2067 Vigna mungo HOM05D004174 ORTHO05D004624 1.3e-08 64.3 38 73.7
Duzib187G0531 Durio zibethinus HOM05D004174 ORTHO05D004624 1.6e-08 63.9 38 76.3
HanXRQChr03g0062501 Helianthus annuus HOM05D004174 ORTHO05D004624 1.6e-08 63.9 38 71.1
Phvul.009G197200 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 1.6e-08 63.9 38 73.7
ECA240G3275 Erigeron canadensis HOM05D004174 ORTHO05D004624 2.2e-08 63.5 38 68.4
Gohir.A08G239300 Gossypium hirsutum HOM05D004174 ORTHO05D004624 2.2e-08 63.5 38 73.7
Gorai.004G277900 Gossypium raimondii HOM05D004174 ORTHO05D004624 2.2e-08 63.5 38 73.7
Lj7A632G45 Lonicera japonica HOM05D004174 ORTHO05D004624 2.2e-08 63.5 38 73.7
PGR102G0881 Punica granatum HOM05D004174 ORTHO05D004624 2.2e-08 63.5 38 76.3
Manes.14G130500 Manihot esculenta HOM05D004174 ORTHO05D004624 3.7e-08 62.8 38 73.7
Sabra06G0122300 Salix brachista HOM05D004174 ORTHO05D004624 3.7e-08 62.8 77 49.4
Lsat_1_v5_gn_7_42401 Lactuca sativa HOM05D004174 ORTHO05D004624 4.8e-08 62.4 38 68.4
SEGI_17043 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 4.8e-08 62.4 38 73.7
Eucgr.C04181 Eucalyptus grandis HOM05D004174 ORTHO05D004624 6.3e-08 62.0 38 73.7
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 6.3e-08 62.0 38 71.1
SalBow3G2402 Salvia bowleyana HOM05D004174 ORTHO05D004624 6.3e-08 62.0 38 71.1
Gohir.D08G260000 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.1e-07 61.2 38 71.1
AUR62030487 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.8e-07 60.5 35 77.1
Pp3c3_2090 Physcomitrium patens HOM05D004174 ORTHO05D004624 1.8e-07 60.5 38 71.1
arahy.Tifrunner.gnm1.ann1.E6UBTJ Arachis hypogaea HOM05D004174 ORTHO05D004624 2.4e-07 60.1 38 63.2
arahy.Tifrunner.gnm1.ann1.SBVG8E Arachis hypogaea HOM05D004174 ORTHO05D004624 2.4e-07 60.1 38 63.2
SMO169G0291 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 3.1e-07 59.7 38 71.1
DCAR_009201 Daucus carota HOM05D004174 ORTHO05D004624 5.3e-07 58.9 38 65.8
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 5.3e-07 58.9 38 71.1
AagrBONN_evm.TU.Sc2ySwM_368.699 Anthoceros agrestis HOM05D004174 ORTHO05D004624 6.9e-07 58.5 38 65.8
Ah.01g002000 Amaranthus hybridus HOM05D000289 ORTHO05D000208 9.0e-07 58.2 49 57.1
Mapoly0103s0044 Marchantia polymorpha HOM05D004174 ORTHO05D004624 2.0e-06 57.0 35 68.6


User provided reference genes

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