Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.12g053130 Amaranthus hybridus HOM05D003990 ORTHO05D004925 4.8e-154 547.7 268 100.0
AUR62007042 Chenopodium quinoa HOM05D003990 ORTHO05D004925 6.5e-135 484.2 268 86.2
AUR62019906 Chenopodium quinoa HOM05D003990 ORTHO05D004925 5.2e-132 474.6 268 84.0
EL10Ac5g12452 Beta vulgaris HOM05D003990 ORTHO05D004925 1.7e-130 469.5 267 83.5
Sc01g0010580 Simmondsia chinensis HOM05D003990 ORTHO05D004925 4.3e-118 428.3 266 75.2
Ah.12g053140 Amaranthus hybridus HOM05D003990 ORTHO05D004925 1.1e-97 360.5 268 65.3
Sc01g0010590 Simmondsia chinensis HOM05D003990 ORTHO05D004925 1.9e-97 359.8 264 65.2
QL02p029171 Quercus lobata HOM05D003990 ORTHO05D004925 1.2e-96 357.1 264 62.9
CSS0010282 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 2.7e-96 355.9 267 64.8
CSS0021441 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 2.7e-96 355.9 267 64.8
Duzib084G0313 Durio zibethinus HOM05D003990 ORTHO05D004925 5.1e-95 351.7 265 62.6
COL.COLO4_10784 Corchorus olitorius HOM05D003990 ORTHO05D004925 1.2e-93 347.1 265 62.3
MELO3C013779.2 Cucumis melo HOM05D003990 ORTHO05D004925 1.2e-93 347.1 259 63.7
QL02p029158 Quercus lobata HOM05D003990 ORTHO05D004925 1.6e-93 346.7 265 61.5
Aqoxy7G00029 Aquilegia oxysepala HOM05D003990 ORTHO05D004925 3.6e-93 345.5 257 64.2
MSTRG.13719 Avicennia marina HOM05D003990 ORTHO05D004925 1.8e-92 343.2 264 63.3
CsaV3_3G000920 Cucumis sativus L. HOM05D003990 ORTHO05D004925 3.1e-92 342.4 259 62.9
TAR629G1984 Trochodendron aralioides HOM05D003990 ORTHO05D004925 3.1e-92 342.4 257 63.4
CiPaw.11G113600 Carya illinoinensis HOM05D003990 ORTHO05D004925 5.3e-92 341.7 265 62.6
CDE04G2232 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 9.0e-92 340.9 256 59.8
Oeu022040.1 Olea europaea HOM05D003990 ORTHO05D004925 9.0e-92 340.9 260 61.9
Dinv38683 Davidia involucrata HOM05D003990 ORTHO05D001284 2.0e-91 339.7 257 61.9
Lsat_1_v5_gn_3_13681 Lactuca sativa HOM05D003990 ORTHO05D004925 2.0e-91 339.7 266 62.0
Lj2g0026928 Lotus japonicus HOM05D003990 ORTHO05D004925 3.4e-91 339.0 274 60.6
Hma1.2p1_0212F.1_g090230 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 9.9e-91 337.4 264 61.7
Oeu022039.1 Olea europaea HOM05D003990 ORTHO05D004925 1.3e-90 337.0 257 62.3
Eucgr.D01688 Eucalyptus grandis HOM05D003990 ORTHO05D004925 2.2e-90 336.3 265 60.8
ECA246G0738 Erigeron canadensis HOM05D003273 ORTHO05D004023 2.9e-90 335.9 265 60.8
DCAR_009092 Daucus carota HOM05D003990 ORTHO05D004925 3.8e-90 335.5 271 60.1
Rhsim02G0251300 Rhododendron simsii HOM05D003990 ORTHO05D004925 4.9e-90 335.1 257 61.9
Sed0016376 Sechium edule HOM05D003990 ORTHO05D004925 4.9e-90 335.1 267 61.0
FAN13G1570 Fragaria x ananassa HOM05D003990 ORTHO05D004925 2.4e-89 332.8 266 60.9
Lalb_Chr17g0338551 Lupinus albus HOM05D003990 ORTHO05D004925 2.4e-89 332.8 266 60.5
Manes.11G125600 Manihot esculenta HOM05D003990 ORTHO05D004925 2.4e-89 332.8 257 61.1
MD06G1117400 Malus domestica HOM05D003990 ORTHO05D004925 3.2e-89 332.4 261 61.3
Sopen08g004380 Solanum pennellii HOM05D003990 ORTHO05D004925 4.2e-89 332.0 257 61.5
PGSC0003DMG400005851 Solanum tuberosum HOM05D003990 ORTHO05D004925 4.2e-89 332.0 257 61.5
Prupe.5G128500 Prunus persica HOM05D003990 ORTHO05D004925 7.1e-89 331.3 257 62.3
Solyc08g008530.1 Solanum lycopersicum HOM05D003990 ORTHO05D004925 9.3e-89 330.9 257 61.5
Haze_14077 Corylus avellana HOM05D003990 ORTHO05D004925 1.2e-88 330.5 269 61.0
Atru.chr9.1910 Acer truncatum HOM05D003990 ORTHO05D004925 1.6e-88 330.1 267 60.7
CiPaw.12G078400 Carya illinoinensis HOM05D003990 ORTHO05D004925 1.6e-88 330.1 260 61.2
Ciclev10020878m.g Citrus clementina HOM05D003990 ORTHO05D004925 2.1e-88 329.7 257 62.3
Potri.003G145700 Populus trichocarpa HOM05D003990 ORTHO05D004925 2.7e-88 329.3 266 62.0
QL02p029212 Quercus lobata HOM05D003990 ORTHO05D004925 2.7e-88 329.3 267 58.8
Cfa011935 Carpinus fangiana HOM05D003990 ORTHO05D004925 3.5e-88 328.9 257 62.3
HanXRQChr06g0166861 Helianthus annuus HOM05D003990 ORTHO05D004925 6.0e-88 328.2 258 60.5
Cpa.g.sc175.15 Carica papaya HOM05D003990 ORTHO05D004925 1.0e-87 327.4 257 61.5
COL.COLO4_10785 Corchorus olitorius HOM05D003990 ORTHO05D004925 2.3e-87 326.2 265 59.6
Cc08_g16660 Coffea canephora HOM05D003990 ORTHO05D004925 3.0e-87 325.9 263 60.1
Nitab4.5_0001962g0040 Nicotiana tabacum HOM05D003990 ORTHO05D004925 3.0e-87 325.9 266 59.4
Sabra03G0105900 Salix brachista HOM05D003990 ORTHO05D004925 3.0e-87 325.9 264 61.4
Sc16g0011220 Simmondsia chinensis HOM05D003990 ORTHO05D004925 5.1e-87 325.1 242 65.3
TWI60G1311 Tripterygium wilfordii HOM05D003990 ORTHO05D004925 5.1e-87 325.1 257 61.1
Duzib205G1059 Durio zibethinus HOM05D003990 ORTHO05D004925 6.6e-87 324.7 264 58.3
TPR.G36963 Trifolium pratense HOM05D003990 ORTHO05D004925 6.6e-87 324.7 265 58.1
MBI12_g30966_MAGBIO Magnolia biondii HOM05D003990 ORTHO05D004925 1.1e-86 323.9 257 61.1
Peaxi162Scf00102g01878 Petunia axillaris HOM05D003990 ORTHO05D000951 1.5e-86 323.6 254 63.0
RcHm_v2.0_Chr7g0186781 Rosa chinensis HOM05D003990 ORTHO05D004925 1.5e-86 323.6 257 60.3
VMungo1215G2928 Vigna mungo HOM05D003990 ORTHO05D004925 2.5e-86 322.8 267 59.6
Nitab4.5_0000673g0130 Nicotiana tabacum HOM05D003990 ORTHO05D004925 3.3e-86 322.4 266 57.5
Gohir.A02G097800 Gossypium hirsutum HOM05D003990 ORTHO05D004925 4.3e-86 322.0 266 59.0
CANSAT21G0847 Cannabis sativa HOM05D003990 ORTHO05D004925 7.3e-86 321.2 264 59.8
CAN.G792.28 Capsicum annuum HOM05D003990 ORTHO05D004925 7.3e-86 321.2 263 59.3
Gohir.D03G086700 Gossypium hirsutum HOM05D003990 ORTHO05D004925 9.6e-86 320.9 266 58.6
Medtr1g031790 Medicago truncatula HOM05D003990 ORTHO05D004925 9.6e-86 320.9 266 56.8
Gorai.003G075400 Gossypium raimondii HOM05D003990 ORTHO05D004925 1.3e-85 320.5 266 58.6
PSO384G4439 Papaver somniferum HOM05D003990 ORTHO05D004925 1.6e-85 320.1 263 57.0
Phvul.003G021600 Phaseolus vulgaris HOM05D003990 ORTHO05D004925 2.8e-85 319.3 267 58.1
PSO135G0880 Papaver somniferum HOM05D003990 ORTHO05D004925 4.8e-85 318.5 263 56.7
COL.COLO4_10783 Corchorus olitorius HOM05D003990 ORTHO05D004925 6.2e-85 318.2 233 64.8
Aa31LG9G11320 Aethionema arabicum HOM05D003990 ORTHO05D004925 8.1e-85 317.8 260 59.6
Carub.0006s2953 Capsella rubella HOM05D003990 ORTHO05D004925 2.4e-84 316.2 258 60.5
Thhalv10029450m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 3.1e-84 315.8 258 58.5
Sp6g06750 Schrenkiella parvula HOM05D003990 ORTHO05D004925 3.1e-84 315.8 264 58.7
AL6G44800 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 5.3e-84 315.1 258 60.1
BcaB01g01511 Brassica carinata HOM05D003990 ORTHO05D004925 5.3e-84 315.1 264 58.0
A09p28480 Brassica napus HOM05D003990 ORTHO05D004925 5.3e-84 315.1 264 57.6
Thecc.03G222400 Theobroma cacao HOM05D003990 ORTHO05D004925 6.9e-84 314.7 257 58.8
BraA09t38413Z Brassica rapa HOM05D003990 ORTHO05D004925 9.0e-84 314.3 264 57.6
AT4G10750 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.5e-83 313.5 258 60.1
BcaC04g21069 Brassica carinata HOM05D003990 ORTHO05D004925 1.5e-83 313.5 263 57.0
C09p36050 Brassica napus HOM05D003990 ORTHO05D004925 1.5e-83 313.5 263 57.0
BolC9t56444H Brassica oleracea HOM05D003990 ORTHO05D004925 1.5e-83 313.5 263 57.0
Cfa011937 Carpinus fangiana HOM05D003990 ORTHO05D004925 2.0e-83 313.2 267 58.4
ATR0620G013 Amborella trichopoda HOM05D003990 ORTHO05D004925 3.4e-83 312.4 266 57.1
Lj8A201T86 Lonicera japonica HOM05D003990 ORTHO05D004925 3.4e-83 312.4 238 63.0
CARHR255860 Cardamine hirsuta HOM05D003990 ORTHO05D004925 7.6e-83 311.2 258 59.3
Nn1g00366 Nelumbo nucifera HOM05D003990 ORTHO05D004925 4.9e-82 308.5 255 60.4
Zm00001eb103220 Zea mays HOM05D003990 ORTHO05D004925 3.2e-81 305.8 268 54.1
THA.LOC104813054 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 4.6e-80 302.0 255 57.3
HPP92_008886 Vanilla planifolia HOM05D003990 ORTHO05D004925 1.3e-79 300.4 275 53.1
arahy.Tifrunner.gnm1.ann1.LQZ0GD Arachis hypogaea HOM05D003990 ORTHO05D004925 5.1e-79 298.5 253 53.8
arahy.Tifrunner.gnm1.ann1.ZCAA4H Arachis hypogaea HOM05D003990 ORTHO05D004925 5.1e-79 298.5 253 53.8
Os09g0529900 Oryza sativa ssp. japonica HOM05D003990 ORTHO05D004925 6.7e-79 298.1 262 53.4
AUR62007043 Chenopodium quinoa HOM05D003990 ORTHO05D004925 3.7e-77 292.4 221 62.9
AUR62019907 Chenopodium quinoa HOM05D003990 ORTHO05D004925 3.7e-77 292.4 220 63.6
Aa31LG6G7280 Aethionema arabicum HOM05D003990 ORTHO05D004925 8.1e-77 291.2 257 52.5
A01p15340 Brassica napus HOM05D003990 ORTHO05D004925 8.1e-77 291.2 263 53.6
Thhalv10026820m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.1e-76 290.8 254 54.7
SEGI_30656 Sequoiadendron giganteum HOM05D003990 ORTHO05D004925 1.8e-76 290.0 253 55.3
BolC1t01855H Brassica oleracea HOM05D003990 ORTHO05D004925 3.1e-76 289.3 263 53.2
THA.LOC104815209 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 4.0e-76 288.9 262 52.3
EL10Ac5g12450 Beta vulgaris HOM05D003990 ORTHO05D004925 6.9e-76 288.1 219 62.6
arahy.Tifrunner.gnm1.ann1.3SR05H Arachis hypogaea HOM05D003990 ORTHO05D004925 2.2e-74 283.1 253 51.8
arahy.Tifrunner.gnm1.ann1.UPJ447 Arachis hypogaea HOM05D003990 ORTHO05D004925 2.2e-74 283.1 253 51.8
arahy.Tifrunner.gnm1.ann1.IT3SMZ Arachis hypogaea HOM05D003990 ORTHO05D004925 2.9e-74 282.7 253 51.8
arahy.Tifrunner.gnm1.ann1.Y0R09G Arachis hypogaea HOM05D003990 ORTHO05D004925 2.9e-74 282.7 253 51.8
C01p19290 Brassica napus HOM05D003990 ORTHO05D004925 2.9e-74 282.7 263 52.5
FvH4_5g11021 Fragaria vesca HOM05D003990 ORTHO05D004925 6.4e-74 281.6 257 54.9
BcaNung01112 Brassica carinata HOM05D003990 ORTHO05D004925 9.3e-73 277.7 263 51.0
Ca_12579_v3 Cicer arietinum L. HOM05D003990 ORTHO05D004925 9.3e-73 277.7 218 61.5
AL7G29210 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 3.0e-71 272.7 254 51.2
Carub.0007s1702 Capsella rubella HOM05D003990 ORTHO05D004925 3.9e-71 272.3 256 50.4
BolC1t01856H Brassica oleracea HOM05D003990 ORTHO05D004925 8.7e-71 271.2 267 49.4
BraA01t01479Z Brassica rapa HOM05D003990 ORTHO05D004925 8.7e-71 271.2 267 49.4
Psat6g044760 Pisum sativum HOM05D003990 ORTHO05D004925 1.9e-70 270.0 218 58.7
BcaC09g50914 Brassica carinata HOM05D003990 ORTHO05D004925 2.5e-70 269.6 267 49.4
A01p15350 Brassica napus HOM05D003990 ORTHO05D004925 2.5e-70 269.6 267 49.4
vmacro11510 Vaccinium macrocarpon HOM05D003990 ORTHO05D004925 5.6e-70 268.5 265 53.6
Mapoly0141s0022 Marchantia polymorpha HOM05D003990 ORTHO05D004925 7.4e-70 268.1 255 52.9
AagrBONN_evm.TU.Sc2ySwM_117.985 Anthoceros agrestis HOM05D003990 ORTHO05D004925 9.6e-70 267.7 256 53.1
Pp3c17_4700 Physcomitrium patens HOM05D003990 ORTHO05D004925 1.6e-69 266.9 262 49.6
C01p19300 Brassica napus HOM05D003990 ORTHO05D004925 4.8e-69 265.4 258 50.0
BraA01t01478Z Brassica rapa HOM05D003990 ORTHO05D004925 1.1e-68 264.2 263 51.0
BcaC09g50915 Brassica carinata HOM05D003990 ORTHO05D004925 1.2e-67 260.8 231 53.2
Migut.O00797 Erythranthe guttata HOM05D003990 ORTHO05D004925 5.8e-67 258.5 187 69.0
CARHR006280 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.1e-65 254.2 232 52.2
arahy.Tifrunner.gnm1.ann1.UE00R2 Arachis hypogaea HOM05D003990 ORTHO05D004925 1.6e-64 250.4 252 48.8
arahy.Tifrunner.gnm1.ann1.E0UK9T Arachis hypogaea HOM05D003990 ORTHO05D004925 6.0e-64 248.4 267 46.1
arahy.Tifrunner.gnm1.ann1.VJUY72 Arachis hypogaea HOM05D003990 ORTHO05D004925 6.0e-64 248.4 267 46.1
Glyma.07G166800 Glycine max HOM05D003990 ORTHO05D004925 7.9e-64 248.1 178 68.0
Thecc.03G222500 Theobroma cacao HOM05D003990 ORTHO05D004925 5.7e-62 241.9 169 68.6
Thhalv10027122m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.6e-61 240.4 252 47.2
CARHR006270 Cardamine hirsuta HOM05D003990 ORTHO05D004925 7.9e-56 221.5 230 46.1
Haze_09152 Corylus avellana HOM05D003990 ORTHO05D004925 8.8e-55 218.0 194 53.1
QL02p029191 Quercus lobata HOM05D003990 ORTHO05D004925 4.3e-54 215.7 407 35.6
arahy.Tifrunner.gnm1.ann1.QV8INP Arachis hypogaea HOM05D003990 ORTHO05D004925 1.7e-53 213.8 255 43.9
CDE07G1159 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 1.9e-49 200.3 261 42.1
unitig_52.g17196 Utricularia gibba HOM05D003990 ORTHO05D004925 3.6e-48 196.1 170 53.5
Zm00001eb207470 Zea mays HOM05D003990 ORTHO05D004925 7.9e-48 194.9 231 45.0
Sp7g22040 Schrenkiella parvula HOM05D003990 ORTHO05D004925 2.3e-47 193.4 159 57.9
CARHR231480 Cardamine hirsuta HOM05D003990 ORTHO05D004925 2.8e-45 186.4 180 48.3
Aa31LG6G7290 Aethionema arabicum HOM05D003990 ORTHO05D004925 3.2e-41 172.9 148 56.1
AT4G24080 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 7.4e-38 161.8 167 46.1
PRCOL_00003301 Prasinoderma coloniale HOM05D003990 ORTHO05D004925 2.0e-35 153.7 238 38.2
Zm00001eb366680 Zea mays HOM05D003990 ORTHO05D004925 1.0e-34 151.4 231 40.7
Potri.001G084900 Populus trichocarpa HOM05D003990 ORTHO05D004925 1.6e-32 144.1 152 48.7
AagrBONN_evm.TU.Sc2ySwM_228.2729 Anthoceros agrestis HOM05D003990 ORTHO05D004925 1.4e-28 131.0 216 37.5
FAN18G2679 Fragaria x ananassa HOM05D003990 ORTHO05D004925 4.1e-28 129.4 116 50.0
Hma1.2p1_0440F.1_g153760 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 5.0e-26 122.5 101 53.5
CAN.G479.14 Capsicum annuum HOM05D003990 ORTHO05D004925 1.6e-24 117.5 116 47.4
Zm00001eb314200 Zea mays HOM05D003990 ORTHO05D004925 1.6e-24 117.5 221 33.0
Thhalv10027505m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 2.4e-20 103.6 110 42.7
Cfa021766 Carpinus fangiana HOM05D003990 ORTHO05D004925 3.1e-20 103.2 204 30.9
FAN18G2309 Fragaria x ananassa HOM05D003990 ORTHO05D004925 4.1e-20 102.8 67 74.6
Cre01.g015550 Chlamydomonas reinhardtii HOM05D003990 ORTHO05D004925 1.2e-19 101.3 181 32.6
arahy.Tifrunner.gnm1.ann1.R8SYM2 Arachis hypogaea HOM05D003990 ORTHO05D004925 4.2e-17 92.8 139 39.6
arahy.Tifrunner.gnm1.ann1.S5BUNY Arachis hypogaea HOM05D003990 ORTHO05D004925 7.2e-17 92.0 65 69.2
Haze_16436 Corylus avellana HOM05D003990 ORTHO05D004925 7.2e-17 92.0 177 36.2
Duzib068G0872 Durio zibethinus HOM05D003990 ORTHO05D004925 2.6e-14 83.6 87 46.0
arahy.Tifrunner.gnm1.ann1.228U7D Arachis hypogaea HOM05D003990 ORTHO05D004925 6.3e-13 79.0 68 60.3
Prupe.2G052300 Prunus persica HOM05D003990 ORTHO05D004925 2.7e-11 73.6 57 61.4
AagrBONN_evm.TU.Sc2ySwM_344.3329 Anthoceros agrestis HOM05D003990 ORTHO05D071624 5.9e-11 72.4 269 26.0
unitig_52.g17197 Utricularia gibba HOM05D003990 ORTHO05D004925 5.9e-11 72.4 43 76.7
Hma1.2p1_0212F.1_g090250 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 1.0e-10 71.6 52 57.7
QL02p029165 Quercus lobata HOM05D003990 ORTHO05D010865 1.3e-10 71.2 58 65.5
Migut.E00635 Erythranthe guttata HOM05D003990 ORTHO05D004925 6.6e-10 68.9 65 47.7
QL02p029160 Quercus lobata HOM05D003990 ORTHO05D004925 1.2e-08 64.7 66 48.5
EL10Ac6g14266 Beta vulgaris HOM05D003990 ORTHO05D004925 2.8e-08 63.5 41 63.4


User provided reference genes

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