Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 1.3e-262 909.1 436 100.0
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 2.6e-221 771.9 467 80.9
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 1.8e-198 696.0 471 73.9
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 2.2e-196 689.1 468 71.4
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 1.1e-195 686.8 467 73.2
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 1.8e-195 686.0 464 73.7
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 9.2e-195 683.7 467 71.5
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 1.2e-194 683.3 467 70.9
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 7.8e-194 680.6 467 70.2
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 1.0e-193 680.2 466 71.0
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 2.3e-193 679.1 467 70.2
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 2.9e-193 678.7 474 69.4
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 3.8e-193 678.3 467 70.0
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 3.8e-193 678.3 467 70.0
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 9.5e-192 673.7 465 70.8
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 1.2e-191 673.3 467 70.7
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 3.6e-191 671.8 481 69.0
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 4.7e-191 671.4 467 69.6
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 4.0e-190 668.3 467 69.2
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 2.6e-189 665.6 466 68.2
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 2.6e-189 665.6 458 71.2
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 5.8e-189 664.5 461 69.6
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 7.5e-189 664.1 467 68.7
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 2.9e-188 662.1 463 68.9
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 1.9e-187 659.4 473 68.5
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 5.4e-187 657.9 467 69.4
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 9.2e-187 657.1 464 68.8
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 3.5e-186 655.2 465 67.5
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 6.0e-186 654.4 467 68.1
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 7.8e-186 654.1 469 69.1
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 3.9e-185 651.7 464 68.3
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 8.6e-185 650.6 463 68.0
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 1.9e-184 649.4 464 67.0
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 2.5e-184 649.0 467 67.9
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 4.3e-184 648.3 465 66.9
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 5.6e-184 647.9 464 67.0
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 1.2e-183 646.7 468 66.9
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 3.1e-182 642.1 454 69.2
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 5.2e-182 641.3 462 67.3
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 2.0e-181 639.4 465 68.0
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 3.4e-181 638.6 453 68.4
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 3.4e-181 638.6 463 67.6
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 6.4e-180 634.4 462 67.1
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 4.6e-178 628.2 446 69.1
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 7.8e-178 627.5 443 68.6
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 1.0e-177 627.1 436 69.3
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 1.3e-177 626.7 458 67.2
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 2.3e-177 625.9 455 67.5
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 1.1e-176 623.6 437 68.9
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 1.5e-176 623.2 443 67.7
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 3.3e-176 622.1 471 64.8
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 4.3e-176 621.7 448 67.4
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 1.2e-175 620.2 435 69.4
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 3.6e-175 618.6 466 64.4
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 6.2e-175 617.8 469 65.5
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 1.1e-174 617.1 466 64.2
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.8e-174 616.3 470 64.5
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 1.8e-174 616.3 436 67.7
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 6.8e-174 614.4 442 66.3
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.2e-173 613.6 466 63.9
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 1.2e-173 613.6 444 67.1
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 5.8e-173 611.3 467 65.1
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.3e-172 610.1 462 63.9
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 2.9e-172 609.0 481 61.7
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 4.9e-172 608.2 442 67.0
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 6.4e-172 607.8 459 64.3
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.4e-171 606.7 471 63.7
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 5.4e-171 604.7 463 63.7
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 1.6e-170 603.2 464 65.3
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 3.5e-170 602.1 465 64.3
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 6.0e-170 601.3 461 62.7
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 3.9e-169 598.6 465 64.5
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 1.6e-167 593.2 404 69.6
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 3.6e-167 592.0 501 60.3
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 4.0e-166 588.6 483 59.8
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 8.9e-166 587.4 460 63.3
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 3.4e-165 585.5 467 63.8
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 8.4e-164 580.9 455 64.0
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 1.1e-163 580.5 468 61.5
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 1.9e-163 579.7 467 59.5
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 2.7e-162 575.9 469 59.9
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 2.7e-162 575.9 469 59.5
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 4.6e-162 575.1 424 66.5
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 7.8e-162 574.3 468 60.7
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 3.9e-161 572.0 418 67.2
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 3.9e-161 572.0 471 59.4
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 3.9e-161 572.0 468 60.9
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 5.1e-161 571.6 400 68.5
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 6.6e-161 571.2 469 61.2
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 4.3e-160 568.5 471 59.0
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 2.1e-159 566.2 468 59.4
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 3.6e-159 565.5 471 59.2
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 3.1e-158 562.4 495 59.2
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 4.0e-158 562.0 469 58.2
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 3.4e-157 558.9 471 58.2
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 3.4e-157 558.9 471 58.2
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 4.9e-156 555.1 474 58.4
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 2.4e-155 552.7 378 69.8
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 1.3e-153 547.0 394 67.3
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 2.3e-153 546.2 463 59.6
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 3.0e-153 545.8 471 57.3
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 3.3e-152 542.3 456 59.0
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 1.6e-151 540.0 457 59.5
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 1.9e-147 526.6 481 55.7
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 1.8e-142 510.0 499 52.3
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 1.5e-141 506.9 483 55.5
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 5.8e-141 505.0 434 58.5
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 5.8e-141 505.0 546 51.3
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 8.4e-140 501.1 444 55.0
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 9.3e-139 497.7 440 55.0
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 4.6e-138 495.4 438 55.0
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 2.3e-137 493.0 390 64.4
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 1.5e-136 490.3 413 58.6
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 1.5e-136 490.3 430 58.6
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 6.1e-130 468.4 436 53.0
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 5.5e-123 445.3 359 60.4
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 7.9e-122 441.4 477 51.4
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 1.5e-120 437.2 300 71.0
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 3.8e-116 422.5 432 51.2
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 1.2e-114 417.5 300 67.7
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 4.7e-106 389.0 349 54.4
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 2.3e-105 386.7 347 55.0
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.7e-103 380.6 464 49.6
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 8.2e-103 378.3 495 42.8
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.5e-99 367.5 400 52.0
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 6.1e-98 362.1 353 55.2
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 1.8e-97 360.5 393 47.1
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 5.0e-92 342.4 273 61.2
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 8.6e-84 315.1 414 40.1
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 4.7e-82 309.3 454 39.4
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 1.0e-76 291.6 223 65.9
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 1.7e-76 290.8 209 65.1
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 4.3e-75 286.2 264 57.6
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 7.8e-69 265.4 188 67.6
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 6.4e-55 219.2 119 79.8
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 4.0e-49 199.9 231 51.5
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 1.9e-46 191.0 165 58.2
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 4.0e-41 173.3 180 48.9
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 9.0e-41 172.2 167 53.3
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 3.8e-39 166.8 170 51.8
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 4.6e-37 159.8 267 40.8
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 6.6e-36 156.0 265 40.8
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 3.6e-34 150.2 94 73.4
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 1.5e-32 144.8 109 66.1
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 2.6e-24 117.5 214 33.6
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 4.9e-23 113.2 265 34.7
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 6.5e-23 112.8 59 84.7
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 5.5e-22 109.8 62 77.4
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 6.7e-20 102.8 85 63.5
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 8.7e-20 102.4 70 68.6
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 1.8e-17 94.7 71 63.4
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 2.9e-15 87.4 81 58.0
Ah.02g112160 Amaranthus hybridus HOM05D015883 ORTHO05D005553 2.5e-11 74.3 36 94.4
Actinidia22721 Actinidia chinensis HOM05D004439 ORTHO05D057326 2.0e-08 64.7 61 60.7
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 2.6e-08 64.3 36 77.8
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 3.4e-08 63.9 141 34.0
Actinidia27321 Actinidia chinensis HOM05D004439 ORTHO05D005670 5.5e-06 56.6 38 65.8


User provided reference genes

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