Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.12g052420 Amaranthus hybridus HOM05D004067 ORTHO05D004827 4.9e-178 627.9 361 100.0
Ah.07g197270 Amaranthus hybridus HOM05D004067 ORTHO05D004827 2.4e-79 300.1 253 62.8
PGR119G1546 Punica granatum HOM05D004067 ORTHO05D004827 6.9e-39 165.6 263 41.4
Eucgr.H00672 Eucalyptus grandis HOM05D004067 ORTHO05D004827 2.0e-38 164.1 262 42.0
Haze_11008 Corylus avellana HOM05D004067 ORTHO05D004827 3.4e-38 163.3 263 39.2
Potri.001G156300 Populus trichocarpa HOM05D004067 ORTHO05D004827 3.4e-38 163.3 273 41.0
GSVIVG01011761001 Vitis vinifera HOM05D004067 ORTHO05D004827 5.9e-38 162.5 270 40.7
Dinv07642 Davidia involucrata HOM05D004067 ORTHO05D004827 1.0e-37 161.8 263 40.7
Dinv12988 Davidia involucrata HOM05D004067 ORTHO05D004827 1.0e-37 161.8 263 40.7
Cfa008606 Carpinus fangiana HOM05D004067 ORTHO05D004827 1.7e-37 161.0 263 39.2
Sc04g0005490 Simmondsia chinensis HOM05D004067 ORTHO05D004827 2.9e-37 160.2 262 40.5
CARHR143920 Cardamine hirsuta HOM05D004067 ORTHO05D004827 6.5e-37 159.1 266 40.6
TAR627G0408 Trochodendron aralioides HOM05D004067 ORTHO05D004827 1.1e-36 158.3 263 39.2
Actinidia36670 Actinidia chinensis HOM05D004067 ORTHO05D004827 1.4e-36 157.9 260 38.8
Nn3g18214 Nelumbo nucifera HOM05D004067 ORTHO05D004827 1.9e-36 157.5 259 39.8
Ca_12604_v3 Cicer arietinum L. HOM05D004067 ORTHO05D004827 3.2e-36 156.8 263 41.4
Ca_25714_v3 Cicer arietinum L. HOM05D004067 ORTHO05D004827 3.2e-36 156.8 263 41.4
DCAR_007292 Daucus carota HOM05D004067 ORTHO05D004827 4.2e-36 156.4 257 38.1
Medtr6g021910 Medicago truncatula HOM05D004067 ORTHO05D004827 4.2e-36 156.4 261 40.2
Potri.006G111600 Populus trichocarpa HOM05D004067 ORTHO05D004827 4.2e-36 156.4 263 40.3
AT2G01410 Arabidopsis thaliana HOM05D004067 ORTHO05D004827 5.5e-36 156.0 271 41.0
Dinv12989 Davidia involucrata HOM05D004067 ORTHO05D004827 5.5e-36 156.0 267 39.7
Phvul.009G073100 Phaseolus vulgaris HOM05D004067 ORTHO05D004827 5.5e-36 156.0 261 40.2
Lalb_Chr10g0096231 Lupinus albus HOM05D004067 ORTHO05D004827 2.1e-35 154.1 261 39.8
Rhsim09G0097800 Rhododendron simsii HOM05D004067 ORTHO05D004827 2.1e-35 154.1 247 39.3
Actinidia14967 Actinidia chinensis HOM05D004067 ORTHO05D004827 2.7e-35 153.7 263 36.9
Glyma.09G118400 Glycine max HOM05D004067 ORTHO05D004827 2.7e-35 153.7 268 38.8
Sed0006623 Sechium edule HOM05D004067 ORTHO05D004827 2.7e-35 153.7 256 39.5
AL5G10370 Arabidopsis lyrata HOM05D004067 ORTHO05D004827 4.7e-35 152.9 267 40.1
Lj2g0007524 Lotus japonicus HOM05D004067 ORTHO05D004827 6.1e-35 152.5 261 39.1
THA.LOC104805062 Tarenaya hassleriana HOM05D004067 ORTHO05D004827 6.1e-35 152.5 266 39.8
BraA09t37935Z Brassica rapa HOM05D004067 ORTHO05D004827 7.9e-35 152.1 270 38.5
A09p23340 Brassica napus HOM05D004067 ORTHO05D004827 1.0e-34 151.8 270 38.5
Duzib248G1046 Durio zibethinus HOM05D004067 ORTHO05D004827 1.4e-34 151.4 266 37.6
VMungo1309G2882 Vigna mungo HOM05D004067 ORTHO05D004827 1.4e-34 151.4 270 37.4
CSS0042578 Camellia sinensis var. sinensis HOM05D004067 ORTHO05D004827 1.8e-34 151.0 258 38.4
BcaB07g30747 Brassica carinata HOM05D004067 ORTHO05D004827 2.3e-34 150.6 271 38.7
C09p30090 Brassica napus HOM05D004067 ORTHO05D004827 3.9e-34 149.8 271 37.3
Eucgr.L01715 Eucalyptus grandis HOM05D004067 ORTHO05D004827 3.9e-34 149.8 260 39.6
Sp2g12840 Schrenkiella parvula HOM05D004067 ORTHO05D004827 3.9e-34 149.8 266 39.5
BcaC04g21591 Brassica carinata HOM05D004067 ORTHO05D004827 5.2e-34 149.4 270 37.8
BolC9t55873H Brassica oleracea HOM05D004067 ORTHO05D004827 5.2e-34 149.4 270 37.8
Cpa.g.sc65.131 Carica papaya HOM05D004067 ORTHO05D004827 5.2e-34 149.4 268 38.8
CsaV3_5G013550 Cucumis sativus L. HOM05D004067 ORTHO05D004827 5.2e-34 149.4 262 38.2
CsaV3_UNG236440 Cucumis sativus L. HOM05D004067 ORTHO05D004827 5.2e-34 149.4 262 38.2
Psat0s4857g0040 Pisum sativum HOM05D004067 ORTHO05D004827 5.2e-34 149.4 263 39.5
Nn2g15268 Nelumbo nucifera HOM05D004067 ORTHO05D004827 6.7e-34 149.1 262 37.4
MSTRG.2173 Avicennia marina HOM05D004067 ORTHO05D004827 8.8e-34 148.7 255 36.5
BcaC06g31313 Brassica carinata HOM05D004067 ORTHO05D004827 8.8e-34 148.7 265 39.2
MELO3C018333.2 Cucumis melo HOM05D004067 ORTHO05D004827 1.1e-33 148.3 262 37.8
Thhalv10001208m.g Eutrema salsugineum HOM05D004067 ORTHO05D004827 1.1e-33 148.3 268 38.8
Oeu059504.1 Olea europaea HOM05D004067 ORTHO05D004827 1.1e-33 148.3 261 36.4
Carub.0005s0037 Capsella rubella HOM05D004067 ORTHO05D004827 1.5e-33 147.9 265 38.5
Sabra06G0086800 Salix brachista HOM05D004067 ORTHO05D004827 1.5e-33 147.9 263 39.9
BcaC06g34189 Brassica carinata HOM05D004067 ORTHO05D004827 2.0e-33 147.5 263 39.2
Psat0s2696g0040 Pisum sativum HOM05D004067 ORTHO05D004827 2.0e-33 147.5 263 39.2
Psat0s2696g0240 Pisum sativum HOM05D004067 ORTHO05D004827 2.0e-33 147.5 263 39.2
Nitab4.5_0007576g0010 Nicotiana tabacum HOM05D004067 ORTHO05D004827 2.6e-33 147.1 273 37.0
Prupe.1G324200 Prunus persica HOM05D004067 ORTHO05D004827 3.3e-33 146.7 261 38.7
QL01p001776 Quercus lobata HOM05D004067 ORTHO05D004827 3.3e-33 146.7 266 38.3
Psat0s1827g0080 Pisum sativum HOM05D004067 ORTHO05D004827 4.4e-33 146.4 263 38.8
TWI81G0187 Tripterygium wilfordii HOM05D004067 ORTHO05D004827 4.4e-33 146.4 257 39.3
ClCG07G006240 Citrullus lanatus HOM05D004067 ORTHO05D004827 5.7e-33 146.0 264 37.5
Duzib251G0172 Durio zibethinus HOM05D004067 ORTHO05D004827 5.7e-33 146.0 270 37.8
Atru.chr11.1779 Acer truncatum HOM05D004067 ORTHO05D004827 7.4e-33 145.6 275 36.7
BcaC06g34181 Brassica carinata HOM05D004067 ORTHO05D004827 7.4e-33 145.6 261 39.5
CiPaw.05G249400 Carya illinoinensis HOM05D004067 ORTHO05D004827 7.4e-33 145.6 263 36.9
Nitab4.5_0000742g0040 Nicotiana tabacum HOM05D004067 ORTHO05D004827 7.4e-33 145.6 267 40.1
Gohir.D01G145500 Gossypium hirsutum HOM05D004067 ORTHO05D004827 9.7e-33 145.2 274 36.1
Hma1.2p1_0346F.1_g131330 Hydrangea macrophylla HOM05D004067 ORTHO05D004827 9.7e-33 145.2 259 36.3
Hma1.2p1_0346F.1_g131336 Hydrangea macrophylla HOM05D004067 ORTHO05D004827 9.7e-33 145.2 259 36.3
Manes.12G111400 Manihot esculenta HOM05D004067 ORTHO05D004827 9.7e-33 145.2 265 38.9
Psat0s6339g0160 Pisum sativum HOM05D004067 ORTHO05D004827 9.7e-33 145.2 257 39.7
TPR.G39266 Trifolium pratense HOM05D004067 ORTHO05D004827 9.7e-33 145.2 263 39.2
PSO478G1363 Papaver somniferum HOM05D004067 ORTHO05D004827 1.7e-32 144.4 263 36.5
Lsat_1_v5_gn_4_14640 Lactuca sativa HOM05D004067 ORTHO05D004827 2.2e-32 144.1 255 39.2
Psat0s8196g0040 Pisum sativum HOM05D004067 ORTHO05D004827 2.2e-32 144.1 263 38.8
COL.COLO4_20478 Corchorus olitorius HOM05D004067 ORTHO05D004827 2.8e-32 143.7 269 35.7
Psat0s2696g0160 Pisum sativum HOM05D004067 ORTHO05D004827 2.8e-32 143.7 263 38.8
FvH4_4g32390 Fragaria vesca HOM05D004067 ORTHO05D004827 3.7e-32 143.3 265 37.0
PSO017G4920 Papaver somniferum HOM05D004067 ORTHO05D004827 4.8e-32 142.9 261 36.0
Gorai.002G179700 Gossypium raimondii HOM05D004067 ORTHO05D004827 6.3e-32 142.5 266 36.8
ECA234G3105 Erigeron canadensis HOM05D004067 ORTHO05D004827 8.2e-32 142.1 257 37.7
THA.LOC104824143 Tarenaya hassleriana HOM05D004067 ORTHO05D004827 8.2e-32 142.1 270 37.4
Migut.E00421 Erythranthe guttata HOM05D004067 ORTHO05D004827 1.1e-31 141.7 254 36.6
PGSC0003DMG400030500 Solanum tuberosum HOM05D004067 ORTHO05D004827 1.1e-31 141.7 266 36.8
Gohir.A01G152600 Gossypium hirsutum HOM05D004067 ORTHO05D004827 1.4e-31 141.4 274 35.8
CANSAT11G0808 Cannabis sativa HOM05D004067 ORTHO05D004827 1.8e-31 141.0 261 38.3
CANSAT35G0597 Cannabis sativa HOM05D004067 ORTHO05D004827 1.8e-31 141.0 263 37.3
MD16G1028500 Malus domestica HOM05D004067 ORTHO05D004827 1.8e-31 141.0 259 39.0
SalBow1G2245 Salvia bowleyana HOM05D004067 ORTHO05D004827 1.8e-31 141.0 253 37.5
Lj3P873T10 Lonicera japonica HOM05D004067 ORTHO05D004827 2.4e-31 140.6 264 37.1
Aa31LG2G8540 Aethionema arabicum HOM05D004067 ORTHO05D004827 3.1e-31 140.2 265 37.4
Aqoxy5G03134 Aquilegia oxysepala HOM05D004067 ORTHO05D004827 3.1e-31 140.2 289 37.7
FAN12G3660 Fragaria x ananassa HOM05D004067 ORTHO05D004827 3.1e-31 140.2 265 36.6
HanXRQChr12g0377591 Helianthus annuus HOM05D004067 ORTHO05D004827 3.1e-31 140.2 267 36.3
Manes.12G111500 Manihot esculenta HOM05D004067 ORTHO05D004827 5.3e-31 139.4 266 38.0
Thecc.02G281200 Theobroma cacao HOM05D004067 ORTHO05D004827 7.0e-31 139.0 266 36.5
Ciclev10015653m.g Citrus clementina HOM05D004067 ORTHO05D004827 9.1e-31 138.7 267 36.7
FAN17G2802 Fragaria x ananassa HOM05D004067 ORTHO05D004827 1.2e-30 138.3 265 35.8
Atru.chr11.1199 Acer truncatum HOM05D004067 ORTHO05D004827 1.6e-30 137.9 277 35.4
Atru.chr11.1192 Acer truncatum HOM05D004067 ORTHO05D004827 2.0e-30 137.5 277 35.0
FAN22G1587 Fragaria x ananassa HOM05D004067 ORTHO05D004827 2.0e-30 137.5 261 36.0
Nitab4.5_0001832g0050 Nicotiana tabacum HOM05D004067 ORTHO05D004827 2.0e-30 137.5 273 35.2
Lj6A746T53 Lonicera japonica HOM05D004067 ORTHO05D004827 3.5e-30 136.7 263 36.9
PGSC0003DMG400005957 Solanum tuberosum HOM05D004067 ORTHO05D004827 3.5e-30 136.7 275 36.7
MSTRG.13583 Avicennia marina HOM05D004067 ORTHO05D004827 5.9e-30 136.0 259 34.7
FAN07G2052 Fragaria x ananassa HOM05D004067 ORTHO05D004827 5.9e-30 136.0 264 35.2
Lalb_Chr25g0280641 Lupinus albus HOM05D004067 ORTHO05D004827 7.7e-30 135.6 252 33.7
SHI04655 Sapria himalayana HOM05D004067 ORTHO05D004827 7.7e-30 135.6 264 40.2
Sopen04g002750 Solanum pennellii HOM05D004067 ORTHO05D004827 1.0e-29 135.2 273 36.6
Solyc04g007660.1 Solanum lycopersicum HOM05D004067 ORTHO05D004827 1.3e-29 134.8 273 36.6
SGA_v2.0_scaffold257G45678 Striga asiatica HOM05D004067 ORTHO05D004827 5.0e-29 132.9 255 36.1
Lj1g0003353 Lotus japonicus HOM05D004067 ORTHO05D004827 6.5e-29 132.5 259 35.1
Ca_07073_v3 Cicer arietinum L. HOM05D004067 ORTHO05D004827 8.5e-29 132.1 266 35.0
Cc02_g26910 Coffea canephora HOM05D004067 ORTHO05D004827 8.5e-29 132.1 265 36.2
Phvul.008G019900 Phaseolus vulgaris HOM05D004067 ORTHO05D004827 1.9e-28 131.0 265 35.1
Sopen05g003980 Solanum pennellii HOM05D004067 ORTHO05D004827 1.9e-28 131.0 265 34.7
Medtr7g020840 Medicago truncatula HOM05D004067 ORTHO05D004827 2.5e-28 130.6 263 35.4
Psat3g190280 Pisum sativum HOM05D004067 ORTHO05D004827 5.5e-28 129.4 266 33.8
Oeu045868.1 Olea europaea HOM05D004067 ORTHO05D004827 9.4e-28 128.6 253 34.4
TPR.G21639 Trifolium pratense HOM05D004067 ORTHO05D004827 2.1e-27 127.5 246 37.8
Medtr1g030760 Medicago truncatula HOM05D004067 ORTHO05D004827 2.7e-27 127.1 259 35.5
arahy.Tifrunner.gnm1.ann1.KUY2JB Arachis hypogaea HOM05D004067 ORTHO05D004827 6.1e-27 125.9 261 34.9
arahy.Tifrunner.gnm1.ann1.Z6YRHE Arachis hypogaea HOM05D004067 ORTHO05D004827 6.1e-27 125.9 261 34.9
Lalb_Chr01g0007191 Lupinus albus HOM05D004067 ORTHO05D004827 8.0e-27 125.6 268 34.3
VMungo1383G0958 Vigna mungo HOM05D004067 ORTHO05D004827 2.0e-25 120.9 266 33.1
unitig_29.g31872 Utricularia gibba HOM05D004067 ORTHO05D004827 2.6e-25 120.6 239 36.8
C07p31800 Brassica napus HOM05D004067 ORTHO05D004827 3.3e-25 120.2 180 43.9
BolC7t43720H Brassica oleracea HOM05D004067 ORTHO05D004827 3.3e-25 120.2 180 43.9
SEGI_06567 Sequoiadendron giganteum HOM05D004067 ORTHO05D004827 3.3e-25 120.2 265 32.1
CAN.G1298.2 Capsicum annuum HOM05D004067 ORTHO05D004827 4.4e-25 119.8 243 36.2
CDE11G1068 Ceratophyllum demersum HOM05D006533 ORTHO05D004827 4.4e-25 119.8 232 34.9
CSS0041256 Camellia sinensis var. sinensis HOM05D004067 ORTHO05D004827 9.7e-25 118.6 250 34.8
Glyma.08G257000 Glycine max HOM05D004067 ORTHO05D004827 6.3e-24 115.9 265 32.1
Psat6g042640 Pisum sativum HOM05D004067 ORTHO05D004827 1.6e-22 111.3 175 41.7
Peaxi162Scf00253g01313 Petunia axillaris HOM05D004067 ORTHO05D004827 2.7e-22 110.5 254 32.3
TAR627G0040 Trochodendron aralioides HOM05D004067 ORTHO05D004827 3.5e-22 110.2 253 32.0
Psat0s10301g0080 Pisum sativum HOM05D004067 ORTHO05D004827 7.2e-20 102.4 180 40.0
Psat0s2696g0200 Pisum sativum HOM05D004067 ORTHO05D004827 1.6e-19 101.3 214 38.8
unitig_27.g25177 Utricularia gibba HOM05D004067 ORTHO05D004827 3.6e-19 100.1 212 35.8
ATR0053G001 Amborella trichopoda HOM05D004067 ORTHO05D004827 4.0e-18 96.7 271 27.7
Mapoly0139s0024 Marchantia polymorpha HOM05D004067 ORTHO05D004827 4.4e-17 93.2 264 26.9
Medtr3g070770 Medicago truncatula HOM05D004067 ORTHO05D004827 4.8e-16 89.7 266 30.1
TPR.G36928 Trifolium pratense HOM05D004067 ORTHO05D004827 6.3e-16 89.4 197 37.1
SMO340G0277 Selaginella moellendorffii HOM05D004067 ORTHO05D004827 7.7e-14 82.4 242 29.8
Psat0s4857g0120 Pisum sativum HOM05D004067 ORTHO05D004827 3.8e-13 80.1 188 35.1
AagrBONN_evm.TU.Sc2ySwM_344.2330 Anthoceros agrestis HOM05D004067 ORTHO05D004827 5.0e-13 79.7 293 23.5
Pp3c9_1890 Physcomitrium patens HOM05D004067 ORTHO05D004827 1.5e-12 78.2 260 24.6
AUR62010823 Chenopodium quinoa HOM05D004067 ORTHO05D004827 6.1e-11 72.8 42 73.8
Psat0s12802g0040 Pisum sativum HOM05D004067 ORTHO05D004827 1.0e-10 72.0 110 42.7
TAR629G0314 Trochodendron aralioides HOM05D004067 ORTHO05D004827 6.8e-10 69.3 127 40.2
EL10Ac5g12901 Beta vulgaris HOM05D004067 ORTHO05D004827 3.4e-09 67.0 42 71.4
COL.COLO4_16559 Corchorus olitorius HOM05D004067 ORTHO05D004827 2.2e-08 64.3 150 33.3
unitig_62.g23907 Utricularia gibba HOM05D004856 ORTHO05D005710 4.1e-07 60.1 252 27.0
Actinidia20992 Actinidia chinensis HOM05D004856 ORTHO05D005710 1.6e-06 58.2 177 31.1
A05p00530 Brassica napus HOM05D004856 ORTHO05D005710 2.7e-06 57.4 179 29.6
BraA05t19051Z Brassica rapa HOM05D004856 ORTHO05D005710 2.7e-06 57.4 179 29.6
SMO119G0186 Selaginella moellendorffii HOM05D004856 ORTHO05D005710 2.7e-06 57.4 243 27.2
TPR.G39637 Trifolium pratense HOM05D004067 ORTHO05D004827 7.8e-06 55.8 55 49.1


User provided reference genes

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