Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.12g052370 Amaranthus hybridus HOM05D006501 ORTHO05D008241 4.4e-74 281.2 141 100.0
AUR62010820 Chenopodium quinoa HOM05D006501 ORTHO05D008241 1.0e-38 163.7 132 72.0
EL10Ac5g12897 Beta vulgaris HOM05D006501 ORTHO05D008241 2.5e-37 159.1 112 75.9
AUR62019819 Chenopodium quinoa HOM05D006501 ORTHO05D008241 2.5e-37 159.1 127 73.2
Hund11400 Selenicereus undatus HOM05D006501 ORTHO05D008241 9.7e-29 130.6 124 61.3
Rhsim07G0083200 Rhododendron simsii HOM05D006501 ORTHO05D008241 8.2e-28 127.5 117 59.8
Cpa.g.sc79.61 Carica papaya HOM05D006501 ORTHO05D008241 3.1e-27 125.6 120 55.8
SGA_v2.0_scaffold305G47943 Striga asiatica HOM05D006501 ORTHO05D008241 4.1e-27 125.2 131 58.0
TWI60G0228 Tripterygium wilfordii HOM05D006501 ORTHO05D008241 9.1e-27 124.0 109 65.1
Nn3g19061 Nelumbo nucifera HOM05D006501 ORTHO05D008241 1.2e-26 123.6 68 88.2
Thecc.03G294700 Theobroma cacao HOM05D006501 ORTHO05D008241 1.2e-26 123.6 83 80.7
GSVIVG01019510001 Vitis vinifera HOM05D006501 ORTHO05D003403 1.2e-26 123.6 74 82.4
vmacro13905 Vaccinium macrocarpon HOM05D006501 ORTHO05D008241 1.5e-26 123.2 87 72.4
CSS0007891 Camellia sinensis var. sinensis HOM05D006501 ORTHO05D008241 2.0e-26 122.9 109 65.1
SalBow1G7260 Salvia bowleyana HOM05D006501 ORTHO05D008241 2.6e-26 122.5 73 83.6
SalBow1G8172 Salvia bowleyana HOM05D006501 ORTHO05D008241 2.6e-26 122.5 73 83.6
QL02p031049 Quercus lobata HOM05D006501 ORTHO05D008241 3.4e-26 122.1 75 78.7
CiPaw.11G123100 Carya illinoinensis HOM05D006501 ORTHO05D008241 5.9e-26 121.3 92 69.6
Actinidia27329 Actinidia chinensis HOM05D006501 ORTHO05D008241 7.7e-26 120.9 68 83.8
COL.COLO4_10671 Corchorus olitorius HOM05D006501 ORTHO05D008241 1.0e-25 120.6 116 63.8
Dinv37544 Davidia involucrata HOM05D006501 ORTHO05D008241 1.0e-25 120.6 107 65.4
ClCG01G001980 Citrullus lanatus HOM05D006501 ORTHO05D008241 1.3e-25 120.2 119 58.0
Haze_08636 Corylus avellana HOM05D006501 ORTHO05D008241 1.3e-25 120.2 75 78.7
VMungo0251G3563 Vigna mungo HOM05D006501 ORTHO05D008241 1.3e-25 120.2 96 66.7
MELO3C005743.2 Cucumis melo HOM05D006501 ORTHO05D008241 1.7e-25 119.8 70 80.0
CsaV3_5G002110 Cucumis sativus L. HOM05D006501 ORTHO05D008241 1.7e-25 119.8 120 56.7
Prupe.5G116900 Prunus persica HOM05D006501 ORTHO05D008241 1.7e-25 119.8 110 62.7
FAN04G2094 Fragaria x ananassa HOM05D006501 ORTHO05D008241 2.2e-25 119.4 79 72.2
Nitab4.5_0002944g0130 Nicotiana tabacum HOM05D006501 ORTHO05D008241 2.2e-25 119.4 93 64.5
Duzib205G0456 Durio zibethinus HOM05D006501 ORTHO05D008241 2.9e-25 119.0 122 59.0
FAN08G0187 Fragaria x ananassa HOM05D006501 ORTHO05D008241 2.9e-25 119.0 79 70.9
FAN13G2672 Fragaria x ananassa HOM05D006501 ORTHO05D008241 2.9e-25 119.0 79 70.9
Nitab4.5_0006656g0030 Nicotiana tabacum HOM05D006501 ORTHO05D008241 2.9e-25 119.0 88 68.2
DCAR_005033 Daucus carota HOM05D006501 ORTHO05D008241 3.8e-25 118.6 90 71.1
TAR374G0759 Trochodendron aralioides HOM05D006501 ORTHO05D008241 3.8e-25 118.6 68 82.4
TAR374G1465 Trochodendron aralioides HOM05D006501 ORTHO05D008241 3.8e-25 118.6 68 82.4
RcHm_v2.0_Chr7g0195201 Rosa chinensis HOM05D006501 ORTHO05D008241 5.0e-25 118.2 70 84.3
Actinidia22724 Actinidia chinensis HOM05D006501 ORTHO05D008241 6.5e-25 117.9 68 82.4
Manes.02G011600 Manihot esculenta HOM05D006501 ORTHO05D008241 6.5e-25 117.9 69 84.1
Phvul.002G297000 Phaseolus vulgaris HOM05D006501 ORTHO05D008241 6.5e-25 117.9 112 58.9
Cfa022928 Carpinus fangiana HOM05D006501 ORTHO05D008241 8.5e-25 117.5 110 61.8
Sed0001613 Sechium edule HOM05D006501 ORTHO05D008241 8.5e-25 117.5 98 63.3
Sc01g0010190 Simmondsia chinensis HOM05D006501 ORTHO05D008241 8.5e-25 117.5 111 62.2
Solyc08g008270.4 Solanum lycopersicum HOM05D006501 ORTHO05D008241 8.5e-25 117.5 112 60.7
Sopen08g004120 Solanum pennellii HOM05D006501 ORTHO05D008241 8.5e-25 117.5 112 60.7
CAN.G792.46 Capsicum annuum HOM05D006501 ORTHO05D008241 1.1e-24 117.1 112 59.8
Duzib068G1433 Durio zibethinus HOM05D006501 ORTHO05D008241 1.1e-24 117.1 82 73.2
PGSC0003DMG400005788 Solanum tuberosum HOM05D006501 ORTHO05D008241 1.4e-24 116.7 112 59.8
Medtr8g099345 Medicago truncatula HOM05D006501 ORTHO05D008241 1.9e-24 116.3 97 67.0
Glyma.05G215800 Glycine max HOM05D006501 ORTHO05D008241 2.5e-24 115.9 73 76.7
Gohir.A08G100000 Gossypium hirsutum HOM05D006501 ORTHO05D008241 2.5e-24 115.9 68 88.2
Gohir.D08G131800 Gossypium hirsutum HOM05D006501 ORTHO05D008241 2.5e-24 115.9 68 88.2
Gorai.004G134700 Gossypium raimondii HOM05D006501 ORTHO05D008241 2.5e-24 115.9 68 88.2
PGR042G3674 Punica granatum HOM05D006501 ORTHO05D008241 3.2e-24 115.5 106 59.4
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 4.2e-24 115.2 79 72.2
FAN18G2585 Fragaria x ananassa HOM05D006501 ORTHO05D008241 4.2e-24 115.2 77 71.4
FAN18G4356 Fragaria x ananassa HOM05D006501 ORTHO05D008241 4.2e-24 115.2 77 71.4
MD06G1104000 Malus domestica HOM05D006501 ORTHO05D008241 4.2e-24 115.2 117 58.1
Oeu009949.1 Olea europaea HOM05D006501 ORTHO05D008241 4.2e-24 115.2 67 86.6
Ca_17489_v3 Cicer arietinum L. HOM05D006501 ORTHO05D008241 5.5e-24 114.8 97 64.9
MBI07_g24349_MAGBIO Magnolia biondii HOM05D006501 ORTHO05D008241 5.5e-24 114.8 72 79.2
Potri.001G093001 Populus trichocarpa HOM05D006501 ORTHO05D008241 5.5e-24 114.8 64 84.4
FvH4_5g04360 Fragaria vesca HOM05D006501 ORTHO05D008241 7.2e-24 114.4 73 75.3
Peaxi162Scf00102g01748 Petunia axillaris HOM05D006501 ORTHO05D008241 7.2e-24 114.4 106 58.5
MSTRG.25662 Avicennia marina HOM05D006501 ORTHO05D008241 9.4e-24 114.0 88 70.5
BcaB07g31509 Brassica carinata HOM05D006501 ORTHO05D008241 9.4e-24 114.0 89 64.0
BcaB07g31511 Brassica carinata HOM05D006501 ORTHO05D008241 9.4e-24 114.0 67 80.6
Lj4g0012209 Lotus japonicus HOM05D006501 ORTHO05D008241 9.4e-24 114.0 80 73.8
Migut.A00672 Erythranthe guttata HOM05D006501 ORTHO05D008241 1.2e-23 113.6 84 67.9
Potri.003G138500 Populus trichocarpa HOM05D006501 ORTHO05D008241 1.2e-23 113.6 71 80.3
Sabra03G0099700 Salix brachista HOM05D006501 ORTHO05D003403 1.2e-23 113.6 71 80.3
CANSAT21G0520 Cannabis sativa HOM05D006501 ORTHO05D008241 1.6e-23 113.2 111 60.4
Hma1.2p1_0952F.1_g241020 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 1.6e-23 113.2 68 80.9
Hma1.2p1_0952F.1_g241030 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 1.6e-23 113.2 68 80.9
Aqoxy7G00141 Aquilegia oxysepala HOM05D006501 ORTHO05D008241 2.1e-23 112.8 69 81.2
BcaC04g22628 Brassica carinata HOM05D006501 ORTHO05D008241 2.1e-23 112.8 65 80.0
A09p14290 Brassica napus HOM05D006501 ORTHO05D008241 2.1e-23 112.8 65 80.0
C09p17200 Brassica napus HOM05D006501 ORTHO05D008241 2.1e-23 112.8 65 80.0
Eucgr.E00849 Eucalyptus grandis HOM05D006501 ORTHO05D008241 2.1e-23 112.8 82 70.7
Lsat_1_v5_gn_6_12120 Lactuca sativa HOM05D006501 ORTHO05D008241 2.1e-23 112.8 73 75.3
MD14G1122900 Malus domestica HOM05D006501 ORTHO05D008241 2.1e-23 112.8 108 62.0
PSO135G1023 Papaver somniferum HOM05D006501 ORTHO05D008241 2.1e-23 112.8 71 81.7
unitig_46.g18618 Utricularia gibba HOM05D006501 ORTHO05D008241 2.1e-23 112.8 59 93.2
HPP92_004586 Vanilla planifolia HOM05D006501 ORTHO05D000003 2.1e-23 112.8 115 52.2
CARHR046590 Cardamine hirsuta HOM05D006501 ORTHO05D008241 2.7e-23 112.5 72 75.0
THA.LOC104809338 Tarenaya hassleriana HOM05D006501 ORTHO05D008241 2.7e-23 112.5 60 90.0
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 2.7e-23 112.5 110 59.1
AL2G10510 Arabidopsis lyrata HOM05D006501 ORTHO05D008241 3.6e-23 112.1 60 88.3
AT1G64355 Arabidopsis thaliana HOM05D006501 ORTHO05D008241 3.6e-23 112.1 60 88.3
Carub.0002s0043 Capsella rubella HOM05D006501 ORTHO05D008241 3.6e-23 112.1 60 88.3
Thhalv10023703m.g Eutrema salsugineum HOM05D006501 ORTHO05D008241 3.6e-23 112.1 60 88.3
Ciclev10022489m.g Citrus clementina HOM05D006501 ORTHO05D008241 4.6e-23 111.7 81 75.3
Atru.chr4.2141 Acer truncatum HOM05D006501 ORTHO05D008241 6.1e-23 111.3 95 65.3
arahy.Tifrunner.gnm1.ann1.68SH35 Arachis hypogaea HOM05D006501 ORTHO05D008241 7.9e-23 110.9 76 72.4
BolC9t54619H Brassica oleracea HOM05D006501 ORTHO05D008241 7.9e-23 110.9 60 86.7
BraA09t37076Z Brassica rapa HOM05D006501 ORTHO05D008241 7.9e-23 110.9 60 86.7
Pp3c8_24130 Physcomitrium patens HOM05D006501 ORTHO05D008241 1.0e-22 110.5 103 58.3
PSO384G3305 Papaver somniferum HOM05D006501 ORTHO05D008241 1.4e-22 110.2 71 80.3
Psat7g027120 Pisum sativum HOM05D006501 ORTHO05D008241 1.4e-22 110.2 74 71.6
arahy.Tifrunner.gnm1.ann1.MC0I99 Arachis hypogaea HOM05D006501 ORTHO05D008241 1.8e-22 109.8 107 56.1
Lalb_Chr05g0224191 Lupinus albus HOM05D006501 ORTHO05D008241 1.8e-22 109.8 69 82.6
Sp2g00400 Schrenkiella parvula HOM05D006501 ORTHO05D008241 1.8e-22 109.8 59 88.1
AagrBONN_evm.TU.Sc2ySwM_362.747 Anthoceros agrestis HOM05D006501 ORTHO05D008241 2.3e-22 109.4 118 54.2
HanXRQChr09g0256331 Helianthus annuus HOM05D006501 ORTHO05D008241 3.0e-22 109.0 83 69.9
Zm00001eb296420 Zea mays HOM05D006501 ORTHO05D008241 3.9e-22 108.6 113 55.8
Cc08_g15900 Coffea canephora HOM05D006501 ORTHO05D008241 8.8e-22 107.5 69 78.3
BcaC04g22630 Brassica carinata HOM05D006501 ORTHO05D008241 4.4e-21 105.1 64 79.7
COL.COLO4_10669 Corchorus olitorius HOM05D006501 ORTHO05D008241 4.4e-21 105.1 72 77.8
Sed0024637 Sechium edule HOM05D006501 ORTHO05D008241 2.8e-20 102.4 111 52.3
SEGI_03665 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 2.8e-20 102.4 56 87.5
SEGI_07201 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 2.8e-20 102.4 56 87.5
CDE10G1320 Ceratophyllum demersum HOM05D000199 ORTHO05D001448 1.8e-19 99.8 56 83.9
CBR_g30621 Chara braunii HOM05D006501 ORTHO05D008241 1.0e-17 94.0 61 78.7
Mapoly0049s0020 Marchantia polymorpha HOM05D006501 ORTHO05D008241 2.2e-17 92.8 58 81.0
SalBow8G4809 Salvia bowleyana HOM05D006501 ORTHO05D008241 2.9e-17 92.4 80 62.5
Atru.chr9.2018 Acer truncatum HOM05D006501 ORTHO05D008241 5.5e-16 88.2 80 62.5
Atru.chr9.2021 Acer truncatum HOM05D006501 ORTHO05D008241 1.6e-15 86.7 76 65.8
SGA_v2.0_scaffold144G35857 Striga asiatica HOM05D006501 ORTHO05D008241 4.7e-15 85.1 55 76.4
Migut.E01245 Erythranthe guttata HOM05D006501 ORTHO05D008241 3.0e-14 82.4 50 80.0
Cre08.g376450 Chlamydomonas reinhardtii HOM05D006501 ORTHO05D008241 2.0e-13 79.7 53 69.8
Zm00001eb150250 Zea mays HOM05D006501 ORTHO05D008241 1.6e-07 60.1 52 65.4


User provided reference genes

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