Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.12g052060 Amaranthus hybridus HOM05D001976 ORTHO05D001960 7.8e-122 441.0 330 100.0
Ah.07g196780 Amaranthus hybridus HOM05D001976 ORTHO05D001960 5.5e-43 179.1 270 59.3
EL10Ac5g12847 Beta vulgaris HOM05D001976 ORTHO05D001960 1.2e-34 151.4 284 52.8
Hund14258 Selenicereus undatus HOM05D001976 ORTHO05D001960 1.6e-26 124.4 303 43.9
Cpa.g.sc122.6 Carica papaya HOM05D001976 ORTHO05D001960 3.6e-26 123.2 296 37.8
Phvul.002G160900 Phaseolus vulgaris HOM05D001976 ORTHO05D001960 1.8e-25 120.9 283 42.8
Nitab4.5_0000966g0060 Nicotiana tabacum HOM05D001976 ORTHO05D001960 2.4e-22 110.5 305 34.1
Oeu011796.1 Olea europaea HOM05D001976 ORTHO05D001960 2.4e-22 110.5 272 40.8
Nn1g01713 Nelumbo nucifera HOM05D001976 ORTHO05D001960 3.2e-22 110.2 302 45.4
Potri.003G133500 Populus trichocarpa HOM05D001976 ORTHO05D001960 5.4e-22 109.4 303 41.3
Sabra03G0095800 Salix brachista HOM05D001976 ORTHO05D001960 7.1e-22 109.0 298 40.6
CDE04G1018 Ceratophyllum demersum HOM05D001976 ORTHO05D001960 1.2e-21 108.2 284 38.4
FAN08G2781 Fragaria x ananassa HOM05D001976 ORTHO05D001960 2.1e-21 107.5 287 41.5
TAR636G0380 Trochodendron aralioides HOM05D001976 ORTHO05D001960 4.6e-21 106.3 277 35.7
MSTRG.25640 Avicennia marina HOM05D001976 ORTHO05D001960 1.0e-20 105.1 291 33.3
FAN04G0634 Fragaria x ananassa HOM05D001976 ORTHO05D001960 1.7e-20 104.4 291 39.9
Sed0000465 Sechium edule HOM05D001976 ORTHO05D001960 1.7e-20 104.4 291 38.1
VMungo1215G0216 Vigna mungo HOM05D001976 ORTHO05D001960 1.7e-20 104.4 286 41.6
Actinidia28333 Actinidia chinensis HOM05D001976 ORTHO05D001960 2.3e-20 104.0 273 37.0
FAN13G2994 Fragaria x ananassa HOM05D001976 ORTHO05D001960 3.0e-20 103.6 292 36.3
Dinv37579 Davidia involucrata HOM05D001976 ORTHO05D001960 3.9e-20 103.2 305 33.8
Actinidia27357 Actinidia chinensis HOM05D001976 ORTHO05D001960 6.6e-20 102.4 271 33.2
MBI07_g11737_MAGBIO Magnolia biondii HOM05D001976 ORTHO05D001960 6.6e-20 102.4 279 45.9
CDE10G1305 Ceratophyllum demersum HOM05D001976 ORTHO05D001960 1.1e-19 101.7 282 36.2
Hma1.2p1_0216F.1_g091200 Hydrangea macrophylla HOM05D001976 ORTHO05D001960 1.5e-19 101.3 317 32.2
QL02p032753 Quercus lobata HOM05D001976 ORTHO05D001960 1.5e-19 101.3 318 43.1
Sc01g0009940 Simmondsia chinensis HOM05D001976 ORTHO05D001960 2.5e-19 100.5 291 41.9
Glyma.11G020400 Glycine max HOM05D001976 ORTHO05D001960 3.3e-19 100.1 272 39.0
Manes.02G015825 Manihot esculenta HOM05D001976 ORTHO05D001960 7.3e-19 99.0 300 34.0
Potri.001G098000 Populus trichocarpa HOM05D001976 ORTHO05D001960 1.2e-18 98.2 310 37.7
FvH4_5g03470 Fragaria vesca HOM05D001976 ORTHO05D001960 3.6e-18 96.7 291 39.5
FAN18G1918 Fragaria x ananassa HOM05D001976 ORTHO05D001960 3.6e-18 96.7 291 39.5
Glyma.01G223000 Glycine max HOM05D001976 ORTHO05D001960 3.6e-18 96.7 270 38.1
Prupe.5G110000 Prunus persica HOM05D001976 ORTHO05D001960 3.6e-18 96.7 334 38.3
Nitab4.5_0009262g0010 Nicotiana tabacum HOM05D001976 ORTHO05D001960 4.7e-18 96.3 305 32.1
FAN04G1876 Fragaria x ananassa HOM05D001976 ORTHO05D001960 6.2e-18 95.9 290 39.7
Sabra01G0073300 Salix brachista HOM05D001976 ORTHO05D001960 8.1e-18 95.5 303 32.0
THA.LOC104809359 Tarenaya hassleriana HOM05D001976 ORTHO05D001960 1.1e-17 95.1 304 38.5
COL.COLO4_08340 Corchorus olitorius HOM05D001976 ORTHO05D001960 1.4e-17 94.7 254 44.9
Gohir.D12G234501 Gossypium hirsutum HOM05D001976 ORTHO05D001960 1.4e-17 94.7 300 39.7
FAN13G0870 Fragaria x ananassa HOM05D001976 ORTHO05D001960 1.8e-17 94.4 284 37.3
MSTRG.11949 Avicennia marina HOM05D001976 ORTHO05D001960 3.1e-17 93.6 310 29.4
MELO3C016332.2 Cucumis melo HOM05D001976 ORTHO05D001960 4.0e-17 93.2 249 43.4
DCAR_000639 Daucus carota HOM05D001976 ORTHO05D001960 4.0e-17 93.2 282 36.9
PSO384G4698 Papaver somniferum HOM05D001976 ORTHO05D001960 4.0e-17 93.2 304 39.1
CsaV3_4G006180 Cucumis sativus L. HOM05D001976 ORTHO05D001960 8.9e-17 92.0 254 38.6
Thecc.03G288300 Theobroma cacao HOM05D001976 ORTHO05D001960 8.9e-17 92.0 250 42.8
Lj4g0026616 Lotus japonicus HOM05D001976 ORTHO05D001960 1.5e-16 91.3 264 40.2
Peaxi162Scf00074g01625 Petunia axillaris HOM05D001976 ORTHO05D001960 4.4e-16 89.7 303 31.4
Actinidia10617 Actinidia chinensis HOM05D001976 ORTHO05D001960 1.3e-15 88.2 278 33.8
CANSAT21G2063 Cannabis sativa HOM05D001976 ORTHO05D001960 1.3e-15 88.2 334 40.7
Lalb_Chr05g0224421 Lupinus albus HOM05D001976 ORTHO05D001960 1.3e-15 88.2 280 39.6
Ciclev10020100m.g Citrus clementina HOM05D001976 ORTHO05D001960 1.7e-15 87.8 317 36.0
Cc08_g15410 Coffea canephora HOM05D001976 ORTHO05D001960 1.7e-15 87.8 290 30.7
FAN18G1913 Fragaria x ananassa HOM05D001976 ORTHO05D001960 1.7e-15 87.8 281 39.9
Sopen08g030010 Solanum pennellii HOM05D001976 ORTHO05D001960 2.2e-15 87.4 303 35.3
Medtr5g009870 Medicago truncatula HOM05D001976 ORTHO05D001960 2.9e-15 87.0 292 34.9
Ca_24532_v3 Cicer arietinum L. HOM05D001976 ORTHO05D001960 3.7e-15 86.7 278 37.8
Psat2g184040 Pisum sativum HOM05D001976 ORTHO05D001960 3.7e-15 86.7 270 34.8
MD06G1094800 Malus domestica HOM05D001976 ORTHO05D001960 1.1e-14 85.1 328 30.2
MD14G1115100 Malus domestica HOM05D001976 ORTHO05D001960 1.4e-14 84.7 331 38.4
Medtr8g099045 Medicago truncatula HOM05D001976 ORTHO05D001960 1.4e-14 84.7 268 36.6
Cfa012260 Carpinus fangiana HOM05D001976 ORTHO05D001960 1.9e-14 84.3 305 37.0
Duzib068G0824 Durio zibethinus HOM05D001976 ORTHO05D001960 1.9e-14 84.3 284 36.3
LjContig00312_ERROPOS870357g0013732 Lotus japonicus HOM05D001976 ORTHO05D001960 2.4e-14 84.0 213 47.4
Gohir.A12G232900 Gossypium hirsutum HOM05D001976 ORTHO05D001960 3.2e-14 83.6 300 35.7
MBI06_g33542_MAGBIO Magnolia biondii HOM05D001976 ORTHO05D000747 4.1e-14 83.2 134 49.3
CSS0015961 Camellia sinensis var. sinensis HOM05D001976 ORTHO05D001960 5.4e-14 82.8 301 36.2
PGSC0003DMG400012175 Solanum tuberosum HOM05D001976 ORTHO05D001960 5.4e-14 82.8 303 40.3
Atru.chr9.2097 Acer truncatum HOM05D001976 ORTHO05D001960 9.2e-14 82.0 193 44.0
Duzib084G0318 Durio zibethinus HOM05D001976 ORTHO05D001960 9.2e-14 82.0 244 36.5
TAR629G3496 Trochodendron aralioides HOM05D001976 ORTHO05D001960 9.2e-14 82.0 291 42.6
vmacro11415 Vaccinium macrocarpon HOM05D001976 ORTHO05D001960 1.2e-13 81.6 289 37.0
Haze_08732 Corylus avellana HOM05D001976 ORTHO05D001960 1.6e-13 81.3 305 31.1
Solyc08g081710.3 Solanum lycopersicum HOM05D001976 ORTHO05D001960 1.6e-13 81.3 303 37.6
arahy.Tifrunner.gnm1.ann1.9LN53N Arachis hypogaea HOM05D001976 ORTHO05D001960 2.1e-13 80.9 289 33.6
Sed0014014 Sechium edule HOM05D001976 ORTHO05D001960 2.1e-13 80.9 320 36.9
Migut.A00710 Erythranthe guttata HOM05D001976 ORTHO05D001960 2.7e-13 80.5 283 39.9
ATR1131G006 Amborella trichopoda HOM05D001976 ORTHO05D001960 3.5e-13 80.1 264 33.7
Dinv35286 Davidia involucrata HOM05D001976 ORTHO05D001960 7.8e-13 79.0 272 30.9
TPR.G3429 Trifolium pratense HOM05D001976 ORTHO05D001960 7.8e-13 79.0 263 31.9
arahy.Tifrunner.gnm1.ann1.EII57S Arachis hypogaea HOM05D001976 ORTHO05D001960 1.0e-12 78.6 289 33.6
Gorai.008G250800 Gossypium raimondii HOM05D001976 ORTHO05D001960 1.0e-12 78.6 300 39.7
Nn7g37309 Nelumbo nucifera HOM05D001976 ORTHO05D001960 1.7e-12 77.8 309 39.8
CSS0011463 Camellia sinensis var. sinensis HOM05D001976 ORTHO05D001960 3.0e-12 77.0 301 35.5
CiPaw.11G127900 Carya illinoinensis HOM05D001976 ORTHO05D001960 3.0e-12 77.0 300 34.3
PSO135G0786 Papaver somniferum HOM05D001976 ORTHO05D001960 3.0e-12 77.0 307 38.1
Duzib205G1380 Durio zibethinus HOM05D001976 ORTHO05D001960 3.9e-12 76.6 324 32.4
BcaC04g22529 Brassica carinata HOM05D001976 ORTHO05D001960 5.1e-12 76.3 246 34.1
C09p18180 Brassica napus HOM05D001976 ORTHO05D001960 5.1e-12 76.3 246 34.1
SGA_v2.0_scaffold173G39126 Striga asiatica HOM05D001976 ORTHO05D001960 8.6e-12 75.5 317 35.3
TPR.G6642 Trifolium pratense HOM05D001976 ORTHO05D001960 8.6e-12 75.5 223 38.1
BcaB07g31432 Brassica carinata HOM05D001976 ORTHO05D001960 1.5e-11 74.7 287 35.9
SalBow1G7906 Salvia bowleyana HOM05D001976 ORTHO05D001960 1.5e-11 74.7 298 29.5
BolC9t54714H Brassica oleracea HOM05D001976 ORTHO05D001960 1.9e-11 74.3 298 34.2
Eucgr.D01802 Eucalyptus grandis HOM05D001976 ORTHO05D001960 2.5e-11 73.9 180 41.7
RcHm_v2.0_Chr7g0196191 Rosa chinensis HOM05D001976 ORTHO05D001960 2.5e-11 73.9 302 34.8
ClCG07G007760 Citrullus lanatus HOM05D001976 ORTHO05D001960 4.3e-11 73.2 298 35.2
Dinv28365 Davidia involucrata HOM05D001976 ORTHO05D001960 4.3e-11 73.2 271 29.2
Sp2g00630 Schrenkiella parvula HOM05D001976 ORTHO05D001960 9.6e-11 72.0 308 33.1
TAR374G0991 Trochodendron aralioides HOM05D001976 ORTHO05D001960 2.1e-10 70.9 224 36.6
AT1G64080 Arabidopsis thaliana HOM05D001976 ORTHO05D001960 2.8e-10 70.5 292 31.5
TWI81G0614 Tripterygium wilfordii HOM05D001976 ORTHO05D001960 2.8e-10 70.5 301 27.2
GSVIVG01019432001 Vitis vinifera HOM05D001976 ORTHO05D001960 2.8e-10 70.5 158 39.2
THA.LOC104824545 Tarenaya hassleriana HOM05D001976 ORTHO05D001960 4.7e-10 69.7 156 37.8
Rhsim02G0236700 Rhododendron simsii HOM05D001976 ORTHO05D001960 6.2e-10 69.3 302 30.8
AL2G10980 Arabidopsis lyrata HOM05D001976 ORTHO05D001960 1.4e-09 68.2 290 31.7
Thhalv10023416m.g Eutrema salsugineum HOM05D001976 ORTHO05D001960 6.8e-09 65.9 302 33.4
HPP92_023941 Vanilla planifolia HOM05D001976 ORTHO05D001960 1.2e-08 65.1 217 29.5
HPP92_023963 Vanilla planifolia HOM05D001976 ORTHO05D001960 1.2e-08 65.1 217 29.5
CARHR046860 Cardamine hirsuta HOM05D001976 ORTHO05D001960 2.0e-08 64.3 290 32.8
Cfa017241 Carpinus fangiana HOM05D001976 ORTHO05D001960 2.0e-08 64.3 133 51.9
SEGI_24344 Sequoiadendron giganteum HOM05D001976 ORTHO05D001960 2.6e-08 63.9 296 27.7
Lsat_1_v5_gn_6_9901 Lactuca sativa HOM05D001976 ORTHO05D001960 5.8e-08 62.8 292 29.1
HPP92_019991 Vanilla planifolia HOM05D001976 ORTHO05D001960 9.9e-08 62.0 156 30.8
HanXRQChr02g0046321 Helianthus annuus HOM05D001976 ORTHO05D001960 1.7e-07 61.2 174 32.8
CAN.G532.73 Capsicum annuum HOM05D001976 ORTHO05D001960 2.2e-07 60.8 180 39.4
Aa31LG2G1150 Aethionema arabicum HOM05D001976 ORTHO05D001960 8.4e-07 58.9 311 27.7
A09p15010 Brassica napus HOM05D001976 ORTHO05D001960 1.1e-06 58.5 243 29.2
BraA09t37146Z Brassica rapa HOM05D001976 ORTHO05D001960 1.1e-06 58.5 243 29.2
CSS0030727 Camellia sinensis var. sinensis HOM05D001976 ORTHO05D001960 1.1e-06 58.5 265 24.9
Psat7g028840 Pisum sativum HOM05D001976 ORTHO05D001960 1.9e-06 57.8 207 29.5
unitig_46.g18541 Utricularia gibba HOM05D001976 ORTHO05D001960 2.4e-06 57.4 271 25.8
CSS0004562 Camellia sinensis var. sinensis HOM05D001976 ORTHO05D001960 7.1e-06 55.8 263 23.2
ECA233G5343 Erigeron canadensis HOM05D001976 ORTHO05D001960 9.3e-06 55.5 172 29.1
Gohir.A02G104500 Gossypium hirsutum HOM05D001976 ORTHO05D001960 9.3e-06 55.5 269 31.6
Lsat_1_v5_gn_7_8620 Lactuca sativa HOM05D001976 ORTHO05D001960 9.3e-06 55.5 71 53.5
Phvul.002G293900 Phaseolus vulgaris HOM05D001976 ORTHO05D001960 9.3e-06 55.5 154 37.0
SEGI_29628 Sequoiadendron giganteum HOM05D001976 ORTHO05D001960 9.3e-06 55.5 261 27.6


User provided reference genes

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