Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g051130 Amaranthus hybridus HOM05D004876 ORTHO05D005488 1.1e-74 283.5 177 100.0
AUR62028732 Chenopodium quinoa HOM05D004876 ORTHO05D005488 1.7e-51 206.5 177 62.7
AUR62008150 Chenopodium quinoa HOM05D004876 ORTHO05D005488 6.6e-51 204.5 177 62.1
EL10Ac5g10661 Beta vulgaris HOM05D004876 ORTHO05D005488 8.6e-51 204.1 177 68.4
Ciclev10032334m.g Citrus clementina HOM05D004876 ORTHO05D005488 1.8e-40 169.9 158 68.4
Thecc.10G185000 Theobroma cacao HOM05D004876 ORTHO05D005488 5.3e-40 168.3 168 62.5
Duzib114G0677 Durio zibethinus HOM05D004876 ORTHO05D005488 2.6e-39 166.0 163 54.6
Prupe.2G265600 Prunus persica HOM05D004876 ORTHO05D005488 3.4e-39 165.6 157 58.6
HanXRQChr14g0460541 Helianthus annuus HOM05D004876 ORTHO05D005488 9.9e-39 164.1 162 70.4
TAR636G2293 Trochodendron aralioides HOM05D004876 ORTHO05D005488 1.3e-38 163.7 162 56.2
vmacro06902 Vaccinium macrocarpon HOM05D004876 ORTHO05D005488 2.2e-38 162.9 168 60.7
TPR.G13975 Trifolium pratense HOM05D004876 ORTHO05D005488 3.8e-38 162.2 157 56.1
Duzib106G1237 Durio zibethinus HOM05D004876 ORTHO05D005488 4.9e-38 161.8 169 64.5
Phvul.009G042700 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 4.9e-38 161.8 160 53.8
MD01G1169400 Malus domestica HOM05D004876 ORTHO05D005488 1.4e-37 160.2 155 54.2
Manes.10G044800 Manihot esculenta HOM05D004876 ORTHO05D005488 2.4e-37 159.5 160 67.5
Nitab4.5_0000171g0270 Nicotiana tabacum HOM05D004876 ORTHO05D005488 4.2e-37 158.7 157 66.9
Ca_29506_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 5.4e-37 158.3 159 67.3
Glyma.06G141500 Glycine max HOM05D004876 ORTHO05D005488 5.4e-37 158.3 160 55.6
COL.COLO4_19475 Corchorus olitorius HOM05D004876 ORTHO05D005488 7.1e-37 157.9 167 63.5
Gohir.D10G184200 Gossypium hirsutum HOM05D004876 ORTHO05D005488 7.1e-37 157.9 168 63.7
Gorai.011G206400 Gossypium raimondii HOM05D004876 ORTHO05D005488 7.1e-37 157.9 168 63.7
Peaxi162Scf00073g02225 Petunia axillaris HOM05D004876 ORTHO05D005488 7.1e-37 157.9 162 63.6
Phvul.005G185900 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 9.3e-37 157.5 158 53.2
Dinv37250 Davidia involucrata HOM05D004876 ORTHO05D005488 1.2e-36 157.1 158 68.4
Gohir.A10G177600 Gossypium hirsutum HOM05D004876 ORTHO05D005488 1.2e-36 157.1 168 63.1
Cc02_g05210 Coffea canephora HOM05D004876 ORTHO05D005488 1.6e-36 156.8 160 65.6
Haze_17370 Corylus avellana HOM05D004876 ORTHO05D005488 1.6e-36 156.8 157 68.8
CiPaw.04G175400 Carya illinoinensis HOM05D004876 ORTHO05D005488 2.7e-36 156.0 158 53.8
CSS0007534 Camellia sinensis var. sinensis HOM05D004876 ORTHO05D005488 3.5e-36 155.6 160 65.6
PGSC0003DMG400011645 Solanum tuberosum HOM05D004876 ORTHO05D005488 3.5e-36 155.6 161 64.6
PSO675G4155 Papaver somniferum HOM05D004876 ORTHO05D005488 4.6e-36 155.2 158 53.8
QL08p065087 Quercus lobata HOM05D004876 ORTHO05D005488 6.0e-36 154.8 160 56.2
Solyc05g052180.3 Solanum lycopersicum HOM05D004876 ORTHO05D005488 6.0e-36 154.8 157 65.6
Nitab4.5_0006356g0050 Nicotiana tabacum HOM05D004876 ORTHO05D005488 7.9e-36 154.5 157 65.6
ECA247G1702 Erigeron canadensis HOM05D004876 ORTHO05D008274 1.0e-35 154.1 151 67.5
Potri.019G061200 Populus trichocarpa HOM05D004876 ORTHO05D005488 1.0e-35 154.1 159 56.0
TWI53G0120 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 1.0e-35 154.1 163 57.7
FAN12G2601 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.3e-35 153.7 160 53.8
Atru.chr12.194 Acer truncatum HOM05D004876 ORTHO05D005488 1.7e-35 153.3 170 50.6
MSTRG.8381 Avicennia marina HOM05D004876 ORTHO05D005488 1.7e-35 153.3 162 64.2
Lj1g0004349 Lotus japonicus HOM05D004876 ORTHO05D005488 1.7e-35 153.3 157 54.8
MBI15_g39395_MAGBIO Magnolia biondii HOM05D004876 ORTHO05D005488 1.7e-35 153.3 164 53.0
Rhsim03G0153600 Rhododendron simsii HOM05D004876 ORTHO05D005488 1.7e-35 153.3 168 61.9
CAN.G1229.8 Capsicum annuum HOM05D004876 ORTHO05D005488 2.3e-35 152.9 157 65.0
Lsat_1_v5_gn_5_104800 Lactuca sativa HOM05D004876 ORTHO05D005488 2.3e-35 152.9 159 69.2
Sopen05g030710 Solanum pennellii HOM05D004876 ORTHO05D005488 3.0e-35 152.5 156 64.7
THA.LOC104824370 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 3.0e-35 152.5 157 51.6
TWI09G0651 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 3.0e-35 152.5 168 53.0
CiPaw.02G093900 Carya illinoinensis HOM05D004876 ORTHO05D005488 3.9e-35 152.1 158 53.2
VMungo1309G0380 Vigna mungo HOM05D004876 ORTHO05D005488 3.9e-35 152.1 160 53.8
Lalb_Chr11g0067701 Lupinus albus HOM05D004876 ORTHO05D005488 5.1e-35 151.8 160 51.9
Os03g0114200 Oryza sativa ssp. japonica HOM05D004876 ORTHO05D005488 5.1e-35 151.8 162 48.8
Cpa.g.sc128.23 Carica papaya HOM05D004876 ORTHO05D005488 1.1e-34 150.6 160 51.2
Migut.F01232 Erythranthe guttata HOM05D004876 ORTHO05D005488 1.5e-34 150.2 162 51.2
Ca_16858_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 2.5e-34 149.4 176 61.4
FAN10G2920 Fragaria x ananassa HOM05D004876 ORTHO05D005488 2.5e-34 149.4 160 52.5
PGR142G0395 Punica granatum HOM05D004876 ORTHO05D005488 3.3e-34 149.1 161 59.6
RcHm_v2.0_Chr1g0372561 Rosa chinensis HOM05D004876 ORTHO05D005488 3.3e-34 149.1 160 53.8
TPR.G28952 Trifolium pratense HOM05D004876 ORTHO05D005488 3.3e-34 149.1 157 54.1
FvH4_7g26120 Fragaria vesca HOM05D004876 ORTHO05D005488 4.3e-34 148.7 160 52.5
Medtr3g093790 Medicago truncatula HOM05D004876 ORTHO05D005488 4.3e-34 148.7 157 64.3
PSO170G6098 Papaver somniferum HOM05D004876 ORTHO05D005488 7.3e-34 147.9 162 53.1
THA.LOC104803220 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 9.6e-34 147.5 159 61.6
PGR142G2846 Punica granatum HOM05D004876 ORTHO05D005488 1.6e-33 146.7 162 48.8
SGA_v2.0_scaffold2G00887 Striga asiatica HOM05D004876 ORTHO05D005488 1.6e-33 146.7 171 60.2
FAN03G2458 Fragaria x ananassa HOM05D004876 ORTHO05D005488 2.1e-33 146.4 160 51.9
Sed0020097 Sechium edule HOM05D004876 ORTHO05D005488 6.2e-33 144.8 164 50.6
ClCG07G004830 Citrullus lanatus HOM05D004876 ORTHO05D005488 8.1e-33 144.4 155 52.3
CsaV3_5G010740 Cucumis sativus L. HOM05D004876 ORTHO05D005488 1.1e-32 144.1 155 51.0
ATR1127G178 Amborella trichopoda HOM05D004876 ORTHO05D005488 1.8e-32 143.3 162 50.0
Sc10g0003050 Simmondsia chinensis HOM05D004876 ORTHO05D005488 1.8e-32 143.3 104 65.4
CANSAT64G2122 Cannabis sativa HOM05D004876 ORTHO05D005488 4.0e-32 142.1 167 49.7
MELO3C020110.2 Cucumis melo HOM05D004876 ORTHO05D005488 4.0e-32 142.1 155 51.0
FvH4_4g04970 Fragaria vesca HOM05D004876 ORTHO05D005488 4.0e-32 142.1 179 48.0
ATR0733G227 Amborella trichopoda HOM05D004876 ORTHO05D005488 5.3e-32 141.7 167 48.5
unitig_736.g22953 Utricularia gibba HOM05D004876 ORTHO05D005488 5.3e-32 141.7 159 58.5
Oeu006067.1 Olea europaea HOM05D004876 ORTHO05D005488 6.9e-32 141.4 160 62.5
Psat5g069360 Pisum sativum HOM05D004876 ORTHO05D005488 6.9e-32 141.4 158 51.9
CANSAT64G1352 Cannabis sativa HOM05D004876 ORTHO05D005488 1.5e-31 140.2 167 49.1
arahy.Tifrunner.gnm1.ann1.58ULDB Arachis hypogaea HOM05D004876 ORTHO05D005488 3.4e-31 139.0 166 60.2
SalBow7G3110 Salvia bowleyana HOM05D004876 ORTHO05D005488 3.4e-31 139.0 162 59.9
FAN06G0183 Fragaria x ananassa HOM05D004876 ORTHO05D005488 5.8e-31 138.3 164 50.6
Zm00001eb000910 Zea mays HOM05D004876 ORTHO05D005488 5.8e-31 138.3 164 47.6
AL4G34450 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 9.9e-31 137.5 156 48.7
AL4G38670 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 1.3e-30 137.1 156 48.7
Aqoxy6G02070 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 1.7e-30 136.7 160 50.0
AT2G40780 Arabidopsis thaliana HOM05D004876 ORTHO05D005488 2.2e-30 136.3 156 47.4
Carub.0004s2308 Capsella rubella HOM05D004876 ORTHO05D005488 3.8e-30 135.6 160 48.1
Lsat_1_v5_gn_2_126741 Lactuca sativa HOM05D004876 ORTHO05D005488 3.8e-30 135.6 158 65.2
HPP92_015433 Vanilla planifolia HOM05D004876 ORTHO05D005488 3.8e-30 135.6 157 46.5
Aqoxy2G01672 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 4.9e-30 135.2 164 48.8
Lj6g0009237 Lotus japonicus HOM05D004876 ORTHO05D005488 6.4e-30 134.8 157 61.8
GSVIVG01038577001 Vitis vinifera HOM05D004876 ORTHO05D005488 2.4e-29 132.9 123 72.4
BcaB06g29175 Brassica carinata HOM05D004876 ORTHO05D005488 4.2e-29 132.1 159 47.8
CDE07G1038 Ceratophyllum demersum HOM05D004876 ORTHO05D005488 4.2e-29 132.1 165 49.1
BolC4t28355H Brassica oleracea HOM05D004876 ORTHO05D005488 7.1e-29 131.3 160 46.2
A04p31160 Brassica napus HOM05D004876 ORTHO05D005488 3.5e-28 129.0 160 45.6
C04p68560 Brassica napus HOM05D004876 ORTHO05D005488 3.5e-28 129.0 160 45.6
BraA04t18571Z Brassica rapa HOM05D004876 ORTHO05D005488 7.9e-28 127.9 160 45.0
Migut.A00831 Erythranthe guttata HOM05D004876 ORTHO05D005488 1.0e-27 127.5 162 45.7
Sp4g23100 Schrenkiella parvula HOM05D004876 ORTHO05D005488 1.0e-27 127.5 161 46.0
Dinv21858 Davidia involucrata HOM05D004876 ORTHO05D005488 6.7e-27 124.8 106 74.5
Aa31LG3G1350 Aethionema arabicum HOM05D004876 ORTHO05D005488 1.1e-26 124.0 159 45.9
Thhalv10017311m.g Eutrema salsugineum HOM05D004876 ORTHO05D005488 2.5e-26 122.9 160 43.8
Ca_29868_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 4.3e-26 122.1 124 52.4
CARHR135880 Cardamine hirsuta HOM05D004876 ORTHO05D005488 5.6e-26 121.7 161 45.3
THA.LOC104808402 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 7.4e-26 121.3 104 57.7
Aqoxy5G02193 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 9.6e-26 120.9 133 49.6
Peaxi162Scf00167g01129 Petunia axillaris HOM05D004876 ORTHO05D005488 2.1e-25 119.8 113 56.6
SEGI_18121 Sequoiadendron giganteum HOM05D004876 ORTHO05D005488 6.2e-25 118.2 165 39.4
Nitab4.5_0008902g0030 Nicotiana tabacum HOM05D004876 ORTHO05D005488 1.1e-24 117.5 157 58.0
Sopen03g025590 Solanum pennellii HOM05D004876 ORTHO05D005488 1.8e-24 116.7 106 75.5
Eucgr.G03147 Eucalyptus grandis HOM05D004876 ORTHO05D005488 2.4e-24 116.3 174 48.3
Sabra19G0074800 Salix brachista HOM05D004876 ORTHO05D005488 1.2e-23 114.0 108 57.4
Lj8A52T23 Lonicera japonica HOM05D004876 ORTHO05D005488 1.5e-23 113.6 106 56.6
PGSC0003DMG400020604 Solanum tuberosum HOM05D004876 ORTHO05D005488 1.5e-23 113.6 106 74.5
Actinidia13638 Actinidia chinensis HOM05D004876 ORTHO05D005488 2.0e-23 113.2 121 52.1
FAN17G0734 Fragaria x ananassa HOM05D004876 ORTHO05D005488 3.4e-23 112.5 225 36.0
CiPaw.04G175300 Carya illinoinensis HOM05D004876 ORTHO05D005488 1.0e-22 110.9 102 57.8
BcaB01g03515 Brassica carinata HOM05D004876 ORTHO05D005488 9.3e-21 104.4 156 40.4
Nn1g06656 Nelumbo nucifera HOM05D004876 ORTHO05D005488 9.3e-21 104.4 90 61.1
Mapoly0014s0200 Marchantia polymorpha HOM05D004876 ORTHO05D005488 7.9e-20 101.3 165 38.2
Rhsim04G0113200 Rhododendron simsii HOM05D004876 ORTHO05D005488 1.8e-19 100.1 177 39.5
BcaC02g12879 Brassica carinata HOM05D004876 ORTHO05D005488 2.3e-19 99.8 104 50.0
BcaB05g22749 Brassica carinata HOM05D004876 ORTHO05D005488 5.1e-19 98.6 105 50.5
Pp3c16_8280 Physcomitrium patens HOM05D004876 ORTHO05D005488 5.7e-18 95.1 170 38.2
HanXRQChr07g0204961 Helianthus annuus HOM05D004876 ORTHO05D005488 7.4e-18 94.7 102 53.9
Nn2g10267 Nelumbo nucifera HOM05D004876 ORTHO05D005488 7.6e-15 84.7 80 57.5
AagrBONN_evm.TU.Sc2ySwM_368.2679 Anthoceros agrestis HOM05D004876 ORTHO05D005488 5.0e-14 82.0 156 35.9
C01p26050 Brassica napus HOM05D004876 ORTHO05D005488 9.7e-10 67.8 87 48.3
C03p81600 Brassica napus HOM05D004876 ORTHO05D005488 1.3e-09 67.4 91 42.9
BolC3t20430H Brassica oleracea HOM05D004876 ORTHO05D005488 1.3e-09 67.4 91 42.9
TPR.G24790 Trifolium pratense HOM05D004876 ORTHO05D005488 2.8e-09 66.2 74 50.0
SMO347G0178 Selaginella moellendorffii HOM05D004876 ORTHO05D005488 3.1e-08 62.8 95 37.9
Actinidia31636 Actinidia chinensis HOM05D004876 ORTHO05D005488 7.7e-07 58.2 123 32.5
Zm00001eb290470 Zea mays HOM05D004876 ORTHO05D005488 1.7e-06 57.0 44 54.5


User provided reference genes

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