Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g051120 Amaranthus hybridus HOM05D006995 ORTHO05D008870 4.3e-32 141.0 84 100.0
Ah.11g042030 Amaranthus hybridus HOM05D006995 ORTHO05D008870 8.0e-31 136.7 84 94.0
Hund02782 Selenicereus undatus HOM05D006995 ORTHO05D008870 8.9e-22 106.7 83 73.5
EL10Ac5g10662 Beta vulgaris HOM05D006995 ORTHO05D008870 1.3e-20 102.8 84 75.0
AUR62008151 Chenopodium quinoa HOM05D006995 ORTHO05D008870 2.6e-13 78.6 50 78.0
Migut.O00152 Erythranthe guttata HOM05D006995 ORTHO05D008870 3.8e-12 74.7 85 55.3
Dinv20602 Davidia involucrata HOM05D006995 ORTHO05D008870 4.9e-12 74.3 82 54.9
Peaxi162Scf00089g01427 Petunia axillaris HOM05D006995 ORTHO05D008870 6.4e-12 73.9 82 52.4
CSS0043708 Camellia sinensis var. sinensis HOM05D006995 ORTHO05D008870 1.4e-11 72.8 82 53.7
BcaB02g09725 Brassica carinata HOM05D006995 ORTHO05D008870 1.9e-11 72.4 81 66.7
Sp2g26260 Schrenkiella parvula HOM05D006995 ORTHO05D008870 7.1e-11 70.5 81 58.0
Cc04_g11640 Coffea canephora HOM05D006995 ORTHO05D008870 2.7e-10 68.6 82 57.3
CsaV3_1G008810 Cucumis sativus L. HOM05D006995 ORTHO05D008870 3.5e-10 68.2 58 62.1
Nn4g22611 Nelumbo nucifera HOM05D006995 ORTHO05D008870 4.6e-10 67.8 82 56.1
Sc04g0001540 Simmondsia chinensis HOM05D006995 ORTHO05D008870 4.6e-10 67.8 81 49.4
Aa31LG1G18840 Aethionema arabicum HOM05D006995 ORTHO05D008870 6.0e-10 67.4 81 54.3
BraA09t36465Z Brassica rapa HOM05D006995 ORTHO05D008870 6.0e-10 67.4 82 63.4
unitig_26.g8807 Utricularia gibba HOM05D006995 ORTHO05D008870 6.0e-10 67.4 82 51.2
ClCG01G013460 Citrullus lanatus HOM05D006995 ORTHO05D008870 7.8e-10 67.0 58 60.3
MELO3C002295.2 Cucumis melo HOM05D006995 ORTHO05D008870 7.8e-10 67.0 58 60.3
MSTRG.23164 Avicennia marina HOM05D006995 ORTHO05D008870 1.0e-09 66.6 82 56.1
Sed0018383 Sechium edule HOM05D006995 ORTHO05D008870 1.0e-09 66.6 58 58.6
Psat5g116320 Pisum sativum HOM05D006995 ORTHO05D008870 1.3e-09 66.2 87 51.7
A06p29860 Brassica napus HOM05D006995 ORTHO05D008870 1.7e-09 65.9 82 63.4
BraA06t25934Z Brassica rapa HOM05D006995 ORTHO05D008870 1.7e-09 65.9 82 63.4
Prupe.5G166100 Prunus persica HOM05D006995 ORTHO05D008870 2.3e-09 65.5 81 53.1
MSTRG.11491 Avicennia marina HOM05D006995 ORTHO05D008870 3.0e-09 65.1 82 57.3
MD14G1172000 Malus domestica HOM05D006995 ORTHO05D008870 3.0e-09 65.1 84 57.1
TAR629G0625 Trochodendron aralioides HOM05D006995 ORTHO05D008870 3.9e-09 64.7 82 56.1
VMungo1309G2685 Vigna mungo HOM05D006995 ORTHO05D008870 3.9e-09 64.7 81 54.3
ATR0743G118 Amborella trichopoda HOM05D006995 ORTHO05D008870 6.6e-09 63.9 82 51.2
Lsat_1_v5_gn_5_14241 Lactuca sativa HOM05D006995 ORTHO05D008870 6.6e-09 63.9 81 51.9
Oeu008873.1 Olea europaea HOM05D006995 ORTHO05D008870 6.6e-09 63.9 82 57.3
TWI23G0026 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 6.6e-09 63.9 83 53.0
BcaC01g02557 Brassica carinata HOM05D006995 ORTHO05D008870 8.7e-09 63.5 82 62.2
C03p63500 Brassica napus HOM05D006995 ORTHO05D008870 8.7e-09 63.5 82 62.2
BolC3t18607H Brassica oleracea HOM05D006995 ORTHO05D008870 8.7e-09 63.5 82 62.2
Glyma.06G177900 Glycine max HOM05D006995 ORTHO05D008870 8.7e-09 63.5 83 51.8
Ca_16134_v3 Cicer arietinum L. HOM05D006995 ORTHO05D008870 1.5e-08 62.8 80 56.2
Nitab4.5_0001793g0100 Nicotiana tabacum HOM05D006995 ORTHO05D008870 1.5e-08 62.8 81 53.1
Nitab4.5_0003703g0070 Nicotiana tabacum HOM05D006995 ORTHO05D008870 1.5e-08 62.8 81 53.1
Phvul.009G174500 Phaseolus vulgaris HOM05D006995 ORTHO05D008870 1.5e-08 62.8 80 55.0
TWI39G0505 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 1.5e-08 62.8 83 56.6
Lalb_Chr08g0236711 Lupinus albus HOM05D006995 ORTHO05D008870 2.5e-08 62.0 80 57.5
Actinidia24594 Actinidia chinensis HOM05D006995 ORTHO05D008870 3.3e-08 61.6 81 48.1
ATR0824G277 Amborella trichopoda HOM05D006995 ORTHO05D008870 3.3e-08 61.6 82 50.0
Ca_22795_v3 Cicer arietinum L. HOM05D001863 ORTHO05D001962 3.3e-08 61.6 76 52.6
Lj9C443G5 Lonicera japonica HOM05D006995 ORTHO05D008870 3.3e-08 61.6 81 49.4
Manes.14G061000 Manihot esculenta HOM05D006995 ORTHO05D008870 3.3e-08 61.6 80 55.0
Potri.012G085100 Populus trichocarpa HOM05D006995 ORTHO05D008870 3.3e-08 61.6 84 54.8
AL8G40200 Arabidopsis lyrata HOM05D006995 ORTHO05D008870 4.3e-08 61.2 81 59.3
Glyma.04G187800 Glycine max HOM05D006995 ORTHO05D008870 4.3e-08 61.2 80 51.2
Hma1.2p1_0046F.1_g027080 Hydrangea macrophylla HOM05D006995 ORTHO05D008870 4.3e-08 61.2 81 55.6
CiPaw.12G030600 Carya illinoinensis HOM05D006995 ORTHO05D008870 5.6e-08 60.8 84 51.2
Lj1g0014247 Lotus japonicus HOM05D006995 ORTHO05D008870 5.6e-08 60.8 80 48.8
Aqoxy5G03762 Aquilegia oxysepala HOM05D006995 ORTHO05D008870 7.3e-08 60.5 82 51.2
CiPaw.11G020900 Carya illinoinensis HOM05D006995 ORTHO05D008870 7.3e-08 60.5 83 55.4
Medtr3g077017 Medicago truncatula HOM05D006995 ORTHO05D008870 9.6e-08 60.1 80 55.0
CAN.G338.27 Capsicum annuum HOM05D006995 ORTHO05D008870 1.2e-07 59.7 81 51.9
Solyc03g112290.2 Solanum lycopersicum HOM05D006995 ORTHO05D008870 1.2e-07 59.7 81 51.9
Sopen03g031390 Solanum pennellii HOM05D006995 ORTHO05D008870 1.2e-07 59.7 81 51.9
QL10p006993 Quercus lobata HOM05D006995 ORTHO05D008870 1.6e-07 59.3 82 52.4
SalBow5G1368 Salvia bowleyana HOM05D006995 ORTHO05D008870 1.6e-07 59.3 81 51.9
SalBow5G3606 Salvia bowleyana HOM05D006995 ORTHO05D008870 1.6e-07 59.3 81 51.9
BcaC04g23358 Brassica carinata HOM05D006995 ORTHO05D008870 2.1e-07 58.9 76 55.3
C09p09200 Brassica napus HOM05D006995 ORTHO05D008870 2.1e-07 58.9 76 55.3
BolC9t53833H Brassica oleracea HOM05D006995 ORTHO05D008870 2.1e-07 58.9 76 55.3
Carub.0008s2389 Capsella rubella HOM05D006995 ORTHO05D008870 2.1e-07 58.9 80 57.5
arahy.Tifrunner.gnm1.ann1.W5ECLN Arachis hypogaea HOM05D006995 ORTHO05D008870 2.8e-07 58.5 80 51.2
arahy.Tifrunner.gnm1.ann1.X0DT51 Arachis hypogaea HOM05D006995 ORTHO05D008870 2.8e-07 58.5 80 51.2
A09p08140 Brassica napus HOM05D006995 ORTHO05D008870 2.8e-07 58.5 82 59.8
FAN08G0020 Fragaria x ananassa HOM05D006995 ORTHO05D008870 2.8e-07 58.5 81 54.3
PGSC0003DMG400018185 Solanum tuberosum HOM05D006995 ORTHO05D008870 2.8e-07 58.5 81 50.6
AT5G63135 Arabidopsis thaliana HOM05D006995 ORTHO05D008870 3.6e-07 58.2 80 57.5
FvH4_5g06250 Fragaria vesca HOM05D006995 ORTHO05D008870 3.6e-07 58.2 81 53.1
RcHm_v2.0_Chr7g0192611 Rosa chinensis HOM05D006995 ORTHO05D008870 3.6e-07 58.2 81 53.1
Eucgr.K02801 Eucalyptus grandis HOM05D006995 ORTHO05D008870 4.7e-07 57.8 81 51.9
Thhalv10023776m.g Eutrema salsugineum HOM05D006995 ORTHO05D008870 4.7e-07 57.8 80 52.5
CARHR276970 Cardamine hirsuta HOM05D006995 ORTHO05D008870 6.2e-07 57.4 79 53.2
Cpa.g.sc159.33 Carica papaya HOM05D006995 ORTHO05D008870 6.2e-07 57.4 81 51.9
FAN18G0637 Fragaria x ananassa HOM05D006995 ORTHO05D008870 8.1e-07 57.0 81 51.9
HanXRQChr04g0101331 Helianthus annuus HOM05D006995 ORTHO05D008870 8.1e-07 57.0 84 51.2
THA.LOC104798964 Tarenaya hassleriana HOM05D006995 ORTHO05D008870 8.1e-07 57.0 80 51.2
GSVIVG01007657001 Vitis vinifera HOM05D006995 ORTHO05D008870 5.2e-06 54.3 59 62.7
CANSAT80G0726 Cannabis sativa HOM05D006995 ORTHO05D008870 6.9e-06 53.9 80 53.8
PGR044G0957 Punica granatum HOM05D006995 ORTHO05D008870 6.9e-06 53.9 81 44.4
Gohir.A12G199700 Gossypium hirsutum HOM05D006995 ORTHO05D008870 9.0e-06 53.5 56 53.6
Gorai.008G217400 Gossypium raimondii HOM05D006995 ORTHO05D008870 9.0e-06 53.5 56 53.6


User provided reference genes

Program Settings