Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g051040 Amaranthus hybridus HOM05D004954 ORTHO05D006267 0.0e+00 1236.1 644 100.0
EL10Ac5g10627 Beta vulgaris HOM05D004954 ORTHO05D006267 0.0e+00 1083.6 636 88.8
AUR62008123 Chenopodium quinoa HOM05D004954 ORTHO05D006267 2.2e-293 1011.9 660 82.7
Hund09467 Selenicereus undatus HOM05D004954 ORTHO05D006267 3.5e-291 1004.6 637 81.5
AUR62028702 Chenopodium quinoa HOM05D004954 ORTHO05D006267 3.8e-290 1001.1 644 83.1
Duzib211G0600 Durio zibethinus HOM05D004954 ORTHO05D006267 3.8e-290 1001.1 645 79.7
PGR044G2625 Punica granatum HOM05D004954 ORTHO05D006267 3.6e-288 994.6 642 78.8
Gohir.D07G166900 Gossypium hirsutum HOM05D004954 ORTHO05D006267 3.0e-287 991.5 645 78.8
Thecc.01G211600 Theobroma cacao HOM05D004954 ORTHO05D006267 3.0e-287 991.5 645 78.9
CSS0025127 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 4.0e-287 991.1 645 78.9
Cc01_g16190 Coffea canephora HOM05D004954 ORTHO05D006267 7.5e-286 986.9 643 78.4
Gorai.N003600 Gossypium raimondii HOM05D004954 ORTHO05D006267 7.5e-286 986.9 645 78.4
Dinv10429 Davidia involucrata HOM05D004954 ORTHO05D006267 1.7e-285 985.7 644 78.7
Prupe.8G191000 Prunus persica HOM05D004954 ORTHO05D006267 2.2e-285 985.3 645 78.0
QL09p046153 Quercus lobata HOM05D004954 ORTHO05D006267 4.1e-284 981.1 644 78.1
MD10G1152500 Malus domestica HOM05D004954 ORTHO05D006267 1.2e-283 979.5 644 77.3
Gohir.A07G159500 Gossypium hirsutum HOM05D004954 ORTHO05D006267 2.0e-283 978.8 645 77.8
CANSAT01G1324 Cannabis sativa HOM05D004954 ORTHO05D006267 4.5e-283 977.6 645 77.2
Eucgr.H00730 Eucalyptus grandis HOM05D004954 ORTHO05D006267 4.5e-283 977.6 644 77.3
CsaV3_7G026900 Cucumis sativus L. HOM05D004954 ORTHO05D006267 5.9e-283 977.2 642 77.4
Sed0007567 Sechium edule HOM05D004954 ORTHO05D006267 7.7e-283 976.9 644 77.2
CiPaw.13G054900 Carya illinoinensis HOM05D004954 ORTHO05D006267 1.0e-282 976.5 645 77.7
Actinidia34548 Actinidia chinensis HOM05D004954 ORTHO05D006267 5.0e-282 974.2 644 77.2
MELO3C012723.2 Cucumis melo HOM05D004954 ORTHO05D006267 1.1e-281 973.0 644 76.7
Rhsim13G0052400 Rhododendron simsii HOM05D004954 ORTHO05D006267 1.6e-280 969.1 668 75.0
Dinv28815 Davidia involucrata HOM05D004954 ORTHO05D006267 2.1e-280 968.8 645 77.4
RcHm_v2.0_Chr6g0282881 Rosa chinensis HOM05D004954 ORTHO05D006267 1.2e-278 963.0 644 75.8
Lj1C100T5 Lonicera japonica HOM05D004954 ORTHO05D006267 1.5e-278 962.6 642 77.7
TWI18G0293 Tripterygium wilfordii HOM05D004954 ORTHO05D006267 1.5e-278 962.6 645 76.0
Potri.014G191100 Populus trichocarpa HOM05D004954 ORTHO05D006267 4.4e-278 961.1 644 76.2
Atru.chr5.2285 Acer truncatum HOM05D004954 ORTHO05D006267 9.8e-278 959.9 645 76.4
FAN24G2804 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.3e-277 959.5 651 75.0
ClCG09G008140 Citrullus lanatus HOM05D004954 ORTHO05D006267 2.8e-277 958.4 644 76.4
HanXRQChr01g0007231 Helianthus annuus HOM05D004954 ORTHO05D006267 5.4e-276 954.1 645 76.0
SalBow6G4493 Salvia bowleyana HOM05D004954 ORTHO05D006267 7.0e-276 953.7 644 75.5
FAN27G0710 Fragaria x ananassa HOM05D004954 ORTHO05D006267 5.9e-275 950.7 655 74.2
CSS0003762 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 7.8e-275 950.3 646 76.8
Ciclev10004559m.g Citrus clementina HOM05D004954 ORTHO05D006267 7.8e-275 950.3 645 75.2
Actinidia23789 Actinidia chinensis HOM05D004954 ORTHO05D006267 2.3e-274 948.7 683 73.1
ECA248G3210 Erigeron canadensis HOM05D004954 ORTHO05D006267 2.9e-274 948.3 645 75.8
THA.LOC104818994 Tarenaya hassleriana HOM05D004954 ORTHO05D006267 6.6e-274 947.2 644 74.7
Lalb_Chr19g0124251 Lupinus albus HOM05D004954 ORTHO05D006267 5.2e-271 937.6 644 74.4
DCAR_012691 Daucus carota HOM05D004954 ORTHO05D006267 3.4e-270 934.9 648 74.4
MSTRG.21308 Avicennia marina HOM05D004954 ORTHO05D006267 5.7e-270 934.1 645 74.1
Phvul.003G003500 Phaseolus vulgaris HOM05D004954 ORTHO05D006267 9.8e-270 933.3 645 74.4
C07p39210 Brassica napus HOM05D004954 ORTHO05D006267 3.7e-269 931.4 643 73.4
Oeu003633.1 Olea europaea HOM05D004954 ORTHO05D006267 4.9e-269 931.0 644 73.8
VMungo0251G2039 Vigna mungo HOM05D004954 ORTHO05D006267 4.9e-269 931.0 645 74.3
A06p39130 Brassica napus HOM05D004954 ORTHO05D006267 6.4e-269 930.6 643 73.4
BolC7t44441H Brassica oleracea HOM05D004954 ORTHO05D006267 5.4e-268 927.5 643 73.1
Glyma.17G145700 Glycine max HOM05D004954 ORTHO05D006267 7.0e-268 927.2 646 73.7
Haze_25215 Corylus avellana HOM05D004954 ORTHO05D006267 6.0e-267 924.1 711 69.2
Thhalv10003836m.g Eutrema salsugineum HOM05D004954 ORTHO05D006267 1.3e-266 922.9 643 72.6
PSO170G3087 Papaver somniferum HOM05D004954 ORTHO05D006267 1.3e-266 922.9 639 73.2
PSO063G7187 Papaver somniferum HOM05D004954 ORTHO05D006267 1.7e-266 922.5 639 73.2
AT5G48520 Arabidopsis thaliana HOM05D004954 ORTHO05D006267 9.5e-265 916.8 643 72.0
arahy.Tifrunner.gnm1.ann1.4YG7MF Arachis hypogaea HOM05D004954 ORTHO05D006267 9.5e-265 916.8 645 72.4
arahy.Tifrunner.gnm1.ann1.E22JQ7 Arachis hypogaea HOM05D004954 ORTHO05D006267 9.5e-265 916.8 645 72.4
CAN.G874.27 Capsicum annuum HOM05D004954 ORTHO05D006267 9.5e-265 916.8 644 72.2
Lj2g0006494 Lotus japonicus HOM05D004954 ORTHO05D006267 9.5e-265 916.8 644 73.1
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 1.6e-264 916.0 642 73.5
vmacro21304 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 2.1e-264 915.6 780 64.5
Carub.0008s0810 Capsella rubella HOM05D004954 ORTHO05D006267 6.2e-264 914.1 643 71.7
Sp2g18880 Schrenkiella parvula HOM05D004954 ORTHO05D006267 8.0e-264 913.7 643 71.9
TPR.G29775 Trifolium pratense HOM05D004954 ORTHO05D006267 5.2e-263 911.0 650 72.6
BraA06t26827Z Brassica rapa HOM05D004954 ORTHO05D006267 6.8e-263 910.6 676 69.8
Migut.D00727 Erythranthe guttata HOM05D004954 ORTHO05D006267 6.8e-263 910.6 642 72.7
Sopen06g034480 Solanum pennellii HOM05D004954 ORTHO05D006267 2.9e-261 905.2 642 71.7
Medtr1g038570 Medicago truncatula HOM05D004954 ORTHO05D006267 3.7e-261 904.8 649 72.0
Solyc06g083090.4 Solanum lycopersicum HOM05D004954 ORTHO05D006267 1.1e-260 903.3 642 71.3
BcaC06g30786 Brassica carinata HOM05D004954 ORTHO05D006267 6.0e-259 897.5 643 71.4
Aqoxy7G02924 Aquilegia oxysepala HOM05D004954 ORTHO05D006267 8.6e-258 893.6 640 71.9
MBI18_g30537_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 5.2e-255 884.4 655 69.5
unitig_37.g12142 Utricularia gibba HOM05D004954 ORTHO05D006267 5.2e-255 884.4 644 70.7
SGA_v2.0_scaffold29G12103 Striga asiatica HOM05D004954 ORTHO05D006267 2.0e-254 882.5 601 74.7
Manes.13G054100 Manihot esculenta HOM05D004954 ORTHO05D006267 2.6e-254 882.1 568 78.9
DCAR_018627 Daucus carota HOM05D004954 ORTHO05D006267 2.9e-253 878.6 645 70.9
Nitab4.5_0011983g0020 Nicotiana tabacum HOM05D004954 ORTHO05D006267 3.5e-251 871.7 641 70.0
Peaxi162Scf01242g00120 Petunia axillaris HOM05D004954 ORTHO05D006267 6.6e-250 867.5 644 69.3
Nitab4.5_0002463g0060 Nicotiana tabacum HOM05D004954 ORTHO05D006267 2.5e-249 865.5 643 69.5
Sopen06g034490 Solanum pennellii HOM05D004954 ORTHO05D006267 1.8e-247 859.4 626 70.0
ATR0824G007 Amborella trichopoda HOM05D004954 ORTHO05D006267 4.0e-247 858.2 642 68.2
Solyc06g083100.2 Solanum lycopersicum HOM05D004954 ORTHO05D006267 2.2e-245 852.4 628 69.6
HPP92_017515 Vanilla planifolia HOM05D004954 ORTHO05D006267 1.9e-244 849.4 642 67.8
Aa31sc420G20 Aethionema arabicum HOM05D004954 ORTHO05D006267 3.2e-244 848.6 601 71.7
TAR375G0531 Trochodendron aralioides HOM05D004954 ORTHO05D006267 7.6e-238 827.4 666 65.8
Cfa002884 Carpinus fangiana HOM05D004954 ORTHO05D006267 4.2e-236 821.6 543 76.4
FvH4_2g17860 Fragaria vesca HOM05D004954 ORTHO05D006267 9.3e-236 820.5 543 75.9
Psat6g025280 Pisum sativum HOM05D004954 ORTHO05D006267 2.5e-233 812.4 609 70.6
CDE04G1241 Ceratophyllum demersum HOM05D004954 ORTHO05D006267 8.1e-232 807.4 642 66.4
Sc17g0001680 Simmondsia chinensis HOM05D004954 ORTHO05D006267 9.9e-230 800.4 495 81.8
Ca_12404_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 1.4e-228 796.6 650 65.8
Os06g0186500 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 2.1e-227 792.7 643 63.3
Sabra14G0144200 Salix brachista HOM05D004954 ORTHO05D006267 2.3e-226 789.3 540 75.9
Pp3c20_5680 Physcomitrium patens HOM05D004954 ORTHO05D006267 2.8e-208 729.2 642 56.7
Atru.chr12.963 Acer truncatum HOM05D004954 ORTHO05D006267 1.3e-205 720.3 473 78.2
Lsat_1_v5_gn_5_178381 Lactuca sativa HOM05D004954 ORTHO05D006267 9.7e-201 704.1 593 64.6
SMO367G0402 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 5.3e-199 698.4 647 55.0
FAN15G2379 Fragaria x ananassa HOM05D004954 ORTHO05D006267 5.9e-198 694.9 584 64.2
Mapoly0098s0023 Marchantia polymorpha HOM05D004954 ORTHO05D006267 3.6e-187 659.1 642 53.9
AagrBONN_evm.TU.Sc2ySwM_344.252 Anthoceros agrestis HOM05D004954 ORTHO05D006267 7.5e-177 624.8 676 48.7
Cpa.g.sc8.76 Carica papaya HOM05D004954 ORTHO05D006267 1.4e-159 567.4 388 76.3
GSVIVG01006234001 Vitis vinifera HOM05D004954 ORTHO05D006267 3.1e-154 549.7 516 60.3
Os07g0185700 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 8.3e-152 541.6 643 45.9
COL.COLO4_03294 Corchorus olitorius HOM05D004954 ORTHO05D006267 1.6e-150 537.3 369 77.2
CARHR183510 Cardamine hirsuta HOM05D004954 ORTHO05D006267 4.3e-148 529.3 387 72.1
Zm00001eb301770 Zea mays HOM05D004954 ORTHO05D006267 6.2e-147 525.4 643 44.9
Zm00001eb278340 Zea mays HOM05D004954 ORTHO05D006267 6.2e-139 498.8 364 67.6
arahy.Tifrunner.gnm1.ann1.R4R8P3 Arachis hypogaea HOM05D004954 ORTHO05D006267 2.4e-135 486.9 419 63.5
CBR_g32699 Chara braunii HOM05D004954 ORTHO05D006267 1.6e-118 431.0 549 43.0
SMO302G0009 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 3.6e-115 419.9 621 41.5
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 8.1e-107 392.1 395 57.5
vmacro21300 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 7.9e-102 375.6 309 67.0
MD05G1161600 Malus domestica HOM05D004954 ORTHO05D006267 2.0e-97 360.9 484 47.9
GSVIVG01002254001 Vitis vinifera HOM05D004954 ORTHO05D006267 2.0e-73 281.2 175 79.4
COL.COLO4_03295 Corchorus olitorius HOM05D004954 ORTHO05D006267 1.9e-71 274.6 171 78.9
SEGI_36119 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 2.4e-66 257.7 186 66.7
FAN15G2507 Fragaria x ananassa HOM05D004954 ORTHO05D006267 2.1e-54 218.0 161 69.6
FAN15G2003 Fragaria x ananassa HOM05D004954 ORTHO05D006267 4.0e-53 213.8 152 73.7
Sc17g0001690 Simmondsia chinensis HOM05D004954 ORTHO05D006267 8.8e-53 212.6 144 77.8
Cpa.g.sc8.77 Carica papaya HOM05D004954 ORTHO05D006267 2.4e-50 204.5 117 82.9
Atru.chr12.964 Acer truncatum HOM05D004954 ORTHO05D006267 3.6e-46 190.7 150 64.7
MD05G1161700 Malus domestica HOM05D004954 ORTHO05D006267 1.4e-45 188.7 122 76.2
MBI18_g37244_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 5.4e-42 176.8 105 76.2
Sabra14G0144300 Salix brachista HOM05D004954 ORTHO05D006267 1.7e-40 171.8 106 76.4
SEGI_30399 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 2.3e-40 171.4 135 65.2
VMungo0647G2582 Vigna mungo HOM05D004954 ORTHO05D006267 4.7e-38 163.7 105 80.0
Ca_12408_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 4.1e-34 150.6 178 49.4
MD05G1160200 Malus domestica HOM05D004954 ORTHO05D006267 1.3e-32 145.6 86 84.9
CBR_g49514 Chara braunii HOM05D000019 ORTHO05D001702 1.9e-26 125.2 107 53.3
VMungo0647G1109 Vigna mungo HOM05D004954 ORTHO05D006267 5.4e-26 123.6 127 57.5
Ca_12409_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 2.5e-23 114.8 73 78.1
SEGI_32998 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 6.2e-22 110.2 84 67.9
PGSC0003DMG400008807 Solanum tuberosum HOM05D004954 ORTHO05D006267 1.8e-21 108.6 59 79.7
PGSC0003DMG400020114 Solanum tuberosum HOM05D004954 ORTHO05D006267 1.8e-21 108.6 59 79.7
MD05G1162200 Malus domestica HOM05D004954 ORTHO05D006267 4.4e-20 104.0 58 77.6
VMungo0464G0043 Vigna mungo HOM05D004954 ORTHO05D006267 1.3e-19 102.4 59 76.3
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 1.3e-19 102.4 59 76.3
QL09p053445 Quercus lobata HOM05D004954 ORTHO05D030058 1.1e-18 99.4 130 53.1
Ciclev10018232m.g Citrus clementina HOM05D004954 ORTHO05D006267 6.0e-17 93.6 76 63.2
Glyma.09G284100 Glycine max HOM05D004954 ORTHO05D006267 1.6e-14 85.5 50 74.0
Hma1.2p1_0066F.1_g035760 Hydrangea macrophylla HOM05D004954 ORTHO05D006267 4.7e-14 84.0 56 64.3
Cfa002883 Carpinus fangiana HOM05D020463 ORTHO05D022255 6.2e-14 83.6 54 68.5
Medtr3g114845 Medicago truncatula HOM05D004954 ORTHO05D006267 1.1e-10 72.8 44 63.6
CSS0000571 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D014145 1.9e-10 72.0 48 77.1
SEGI_31941 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 6.0e-09 67.0 44 63.6
TAR375G0464 Trochodendron aralioides HOM05D004954 ORTHO05D006267 1.0e-08 66.2 42 71.4
MD05G1162500 Malus domestica HOM05D004954 ORTHO05D006267 2.1e-06 58.5 107 36.4


User provided reference genes

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