Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g051030 Amaranthus hybridus HOM05D004226 ORTHO05D004842 1.9e-78 295.8 156 100.0
EL10Ac5g10626 Beta vulgaris HOM05D004226 ORTHO05D004842 1.9e-54 216.1 162 74.1
Hund09468 Selenicereus undatus HOM05D004226 ORTHO05D004842 3.2e-49 198.7 166 65.7
AUR62028700 Chenopodium quinoa HOM05D004226 ORTHO05D004842 7.1e-49 197.6 150 70.7
AUR62008122 Chenopodium quinoa HOM05D004226 ORTHO05D004842 7.9e-48 194.1 151 68.9
Hund02794 Selenicereus undatus HOM05D004226 ORTHO05D004842 1.1e-46 190.3 147 66.7
Sc17g0001670 Simmondsia chinensis HOM05D004226 ORTHO05D004842 1.3e-42 176.8 151 61.6
TAR365G1191 Trochodendron aralioides HOM05D004226 ORTHO05D004842 1.4e-41 173.3 145 62.8
Duzib138G1045 Durio zibethinus HOM05D004226 ORTHO05D004842 1.9e-41 172.9 160 58.8
CiPaw.13G055300 Carya illinoinensis HOM05D004226 ORTHO05D004842 3.2e-41 172.2 154 63.0
TAR362G0792 Trochodendron aralioides HOM05D004226 ORTHO05D004842 5.5e-41 171.4 145 63.4
Actinidia23795 Actinidia chinensis HOM05D004226 ORTHO05D004842 7.1e-41 171.0 165 61.2
Haze_03501 Corylus avellana HOM05D004226 ORTHO05D004842 1.2e-40 170.2 158 61.4
vmacro02815 Vaccinium macrocarpon HOM05D004226 ORTHO05D004842 1.2e-40 170.2 155 61.9
Cfa010569 Carpinus fangiana HOM05D004226 ORTHO05D004842 2.7e-40 169.1 158 60.1
Dinv28812 Davidia involucrata HOM05D004226 ORTHO05D004842 2.7e-40 169.1 166 60.2
Gohir.A11G142500 Gossypium hirsutum HOM05D004226 ORTHO05D004842 1.0e-39 167.2 157 58.0
Lsat_1_v5_gn_8_98041 Lactuca sativa HOM05D004226 ORTHO05D004842 1.3e-39 166.8 147 61.9
Cpa.g.sc8.73 Carica papaya HOM05D004226 ORTHO05D004842 1.8e-39 166.4 159 56.6
Manes.12G054100 Manihot esculenta HOM05D004226 ORTHO05D004842 1.8e-39 166.4 162 57.4
Gohir.D11G148800 Gossypium hirsutum HOM05D004226 ORTHO05D004842 2.3e-39 166.0 157 57.3
THA.LOC104802646 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 2.3e-39 166.0 159 57.9
TAR633G1997 Trochodendron aralioides HOM05D004226 ORTHO05D004842 5.1e-39 164.9 141 62.4
Duzib133G0243 Durio zibethinus HOM05D004226 ORTHO05D004842 6.7e-39 164.5 140 60.7
VMungo1383G2422 Vigna mungo HOM05D004226 ORTHO05D004842 8.7e-39 164.1 151 59.6
MSTRG.18494 Avicennia marina HOM05D004226 ORTHO05D004842 1.1e-38 163.7 157 61.8
ECA236G1737 Erigeron canadensis HOM05D004226 ORTHO05D004842 1.5e-38 163.3 162 56.8
Phvul.008G136900 Phaseolus vulgaris HOM05D004226 ORTHO05D004842 1.9e-38 162.9 151 58.9
Dinv10439 Davidia involucrata HOM05D004226 ORTHO05D004842 2.5e-38 162.5 155 59.4
TPR.G26804 Trifolium pratense HOM05D004226 ORTHO05D004842 2.5e-38 162.5 159 59.1
Gorai.007G159600 Gossypium raimondii HOM05D004226 ORTHO05D004842 4.3e-38 161.8 158 57.0
Eucgr.H00726 Eucalyptus grandis HOM05D004226 ORTHO05D004842 5.7e-38 161.4 155 58.1
HanXRQChr08g0231431 Helianthus annuus HOM05D004226 ORTHO05D004842 9.7e-38 160.6 166 57.8
Hma1.2p1_0781F.1_g216920 Hydrangea macrophylla HOM05D004226 ORTHO05D004842 1.3e-37 160.2 176 55.7
Aqoxy2G03959 Aquilegia oxysepala HOM05D004226 ORTHO05D004842 2.2e-37 159.5 152 55.9
Glyma.18G152900 Glycine max HOM05D004226 ORTHO05D004842 2.2e-37 159.5 162 56.2
Migut.N00664 Erythranthe guttata HOM05D004226 ORTHO05D004842 6.3e-37 157.9 146 61.0
Rhsim13G0052600 Rhododendron simsii HOM05D004226 ORTHO05D004842 6.3e-37 157.9 144 59.7
Thecc.01G211100 Theobroma cacao HOM05D004226 ORTHO05D004842 1.8e-36 156.4 150 56.7
Actinidia34543 Actinidia chinensis HOM05D004226 ORTHO05D004842 3.1e-36 155.6 165 57.0
Lalb_Chr03g0041091 Lupinus albus HOM05D004226 ORTHO05D004842 4.1e-36 155.2 162 54.3
Actinidia30018 Actinidia chinensis HOM05D004226 ORTHO05D004842 5.3e-36 154.8 155 57.4
Lalb_Chr01g0021991 Lupinus albus HOM05D004226 ORTHO05D004842 9.0e-36 154.1 153 53.6
Psat3g151000 Pisum sativum HOM05D004226 ORTHO05D004842 9.0e-36 154.1 148 58.1
Potri.002G251200 Populus trichocarpa HOM05D004226 ORTHO05D004842 9.0e-36 154.1 162 54.9
HanXRQChr16g0507911 Helianthus annuus HOM05D004226 ORTHO05D004842 1.5e-35 153.3 156 55.8
Cc01_g16140 Coffea canephora HOM05D004226 ORTHO05D004842 2.0e-35 152.9 158 56.3
Nn1g08255 Nelumbo nucifera HOM05D004226 ORTHO05D004842 2.0e-35 152.9 161 52.8
Nitab4.5_0000038g0150 Nicotiana tabacum HOM05D004226 ORTHO05D004842 2.0e-35 152.9 158 55.1
PGR083G1064 Punica granatum HOM05D004226 ORTHO05D004842 2.6e-35 152.5 162 53.7
DCAR_004767 Daucus carota HOM05D004226 ORTHO05D004842 3.4e-35 152.1 138 57.2
DCAR_018624 Daucus carota HOM05D004226 ORTHO05D004842 4.5e-35 151.8 162 55.6
DCAR_012646 Daucus carota HOM05D004226 ORTHO05D004842 5.9e-35 151.4 158 58.2
Nitab4.5_0009151g0020 Nicotiana tabacum HOM05D004226 ORTHO05D004842 5.9e-35 151.4 158 53.8
QL09p046251 Quercus lobata HOM05D004226 ORTHO05D004842 1.0e-34 150.6 149 57.7
Lj2A1117T18 Lonicera japonica HOM05D004226 ORTHO05D004842 1.3e-34 150.2 155 56.1
HanXRQChr09g0257641 Helianthus annuus HOM05D004226 ORTHO05D004842 1.7e-34 149.8 155 56.1
Oeu003656.1 Olea europaea HOM05D004226 ORTHO05D004842 1.7e-34 149.8 148 57.4
Rhsim01G0248500 Rhododendron simsii HOM05D004226 ORTHO05D004842 2.9e-34 149.1 145 57.2
CANSAT01G0104 Cannabis sativa HOM05D004226 ORTHO05D004842 5.0e-34 148.3 159 56.6
vmacro14692 Vaccinium macrocarpon HOM05D004226 ORTHO05D004842 1.4e-33 146.7 147 57.1
Aa31sc186G10 Aethionema arabicum HOM05D004226 ORTHO05D004842 9.4e-33 144.1 135 54.1
Glyma.08G344200 Glycine max HOM05D004226 ORTHO05D004842 1.2e-32 143.7 164 50.6
PSO017G4362 Papaver somniferum HOM05D004226 ORTHO05D004842 3.6e-32 142.1 140 52.9
CSS0019192 Camellia sinensis var. sinensis HOM05D004226 ORTHO05D004842 4.6e-32 141.7 128 62.5
COL.COLO4_26572 Corchorus olitorius HOM05D004226 ORTHO05D004842 4.6e-32 141.7 157 51.6
PSO675G4654 Papaver somniferum HOM05D004226 ORTHO05D004842 4.6e-32 141.7 140 52.9
Migut.D00735 Erythranthe guttata HOM05D004226 ORTHO05D004842 6.1e-32 141.4 152 50.7
Lj1g0015941 Lotus japonicus HOM05D004226 ORTHO05D004842 6.1e-32 141.4 155 54.2
PGSC0003DMG400027348 Solanum tuberosum HOM05D004226 ORTHO05D004842 7.9e-32 141.0 166 52.4
SGA_v2.0_scaffold8G04494 Striga asiatica HOM05D004226 ORTHO05D004842 1.4e-31 140.2 155 54.8
Ciclev10016998m.g Citrus clementina HOM05D004226 ORTHO05D004842 1.8e-31 139.8 163 50.9
SGA_v2.0_scaffold624G53238 Striga asiatica HOM05D004226 ORTHO05D004842 3.0e-31 139.0 153 54.9
THA.LOC104822467 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 5.1e-31 138.3 162 52.5
ATR0686G035 Amborella trichopoda HOM05D004226 ORTHO05D004842 6.7e-31 137.9 151 53.0
MSTRG.21303 Avicennia marina HOM05D004226 ORTHO05D004842 8.8e-31 137.5 157 51.6
ClCG05G015470 Citrullus lanatus HOM05D004226 ORTHO05D004842 8.8e-31 137.5 149 51.0
Medtr7g052690 Medicago truncatula HOM05D004226 ORTHO05D004842 1.1e-30 137.1 160 51.2
Peaxi162Scf00372g00004 Petunia axillaris HOM05D004226 ORTHO05D004842 1.5e-30 136.7 156 54.5
Sopen11g003480 Solanum pennellii HOM05D004226 ORTHO05D004842 1.5e-30 136.7 166 51.2
ECA247G2547 Erigeron canadensis HOM05D004226 ORTHO05D004842 2.0e-30 136.3 152 49.3
Sabra02G0191000 Salix brachista HOM05D004226 ORTHO05D004842 2.0e-30 136.3 188 44.1
TWI36G1598 Tripterygium wilfordii HOM05D004226 ORTHO05D004842 2.0e-30 136.3 163 51.5
Sopen06g002500 Solanum pennellii HOM05D004226 ORTHO05D004842 3.3e-30 135.6 164 50.0
SGA_v2.0_scaffold29G12070 Striga asiatica HOM05D004226 ORTHO05D004842 3.3e-30 135.6 185 47.0
Oeu057834.2 Olea europaea HOM05D000039 ORTHO05D005440 5.7e-30 134.8 136 54.4
Thhalv10005050m.g Eutrema salsugineum HOM05D004226 ORTHO05D004842 1.3e-29 133.7 143 51.7
Solyc06g007610.2 Solanum lycopersicum HOM05D004226 ORTHO05D004842 2.8e-29 132.5 154 50.6
CsaV3_3G046080 Cucumis sativus L. HOM05D004226 ORTHO05D004842 3.7e-29 132.1 151 47.0
Prupe.8G190400 Prunus persica HOM05D004226 ORTHO05D004842 3.7e-29 132.1 163 52.8
PGSC0003DMG400020653 Solanum tuberosum HOM05D004226 ORTHO05D004842 4.8e-29 131.7 163 50.9
MELO3C003732.2 Cucumis melo HOM05D004226 ORTHO05D004842 6.3e-29 131.3 152 47.4
Nitab4.5_0002311g0050 Nicotiana tabacum HOM05D004226 ORTHO05D004842 8.2e-29 131.0 150 52.7
TWI18G1341 Tripterygium wilfordii HOM05D004226 ORTHO05D004842 8.2e-29 131.0 144 52.1
Migut.D00732 Erythranthe guttata HOM05D004226 ORTHO05D004842 1.1e-28 130.6 154 49.4
SEGI_00481 Sequoiadendron giganteum HOM05D004226 ORTHO05D004842 1.1e-28 130.6 156 47.4
CDE05G1161 Ceratophyllum demersum HOM05D004226 ORTHO05D004842 1.4e-28 130.2 140 52.9
Gohir.D07G094900 Gossypium hirsutum HOM05D004226 ORTHO05D004842 1.8e-28 129.8 138 55.1
Lj3g0009756 Lotus japonicus HOM05D004226 ORTHO05D004842 9.1e-28 127.5 139 49.6
Gohir.A07G090200 Gossypium hirsutum HOM05D004226 ORTHO05D004842 1.2e-27 127.1 138 53.6
Gorai.001G102200 Gossypium raimondii HOM05D004226 ORTHO05D004842 1.2e-27 127.1 138 54.3
Nitab4.5_0002167g0150 Nicotiana tabacum HOM05D004226 ORTHO05D004842 2.0e-27 126.3 143 52.4
Sp2g18850 Schrenkiella parvula HOM05D004226 ORTHO05D004842 3.4e-27 125.6 150 48.7
HPP92_024259 Vanilla planifolia HOM05D004226 ORTHO05D004842 3.4e-27 125.6 138 50.7
A09p04540 Brassica napus HOM05D004226 ORTHO05D004842 4.5e-27 125.2 162 46.9
BraA09t36089Z Brassica rapa HOM05D004226 ORTHO05D004842 4.5e-27 125.2 162 46.9
C09p04850 Brassica napus HOM05D004226 ORTHO05D004842 5.9e-27 124.8 152 46.7
BolC2t11714H Brassica oleracea HOM05D004226 ORTHO05D004842 7.7e-27 124.4 135 47.4
BcaC03g17654 Brassica carinata HOM05D004226 ORTHO05D004842 1.0e-26 124.0 135 47.4
THA.LOC104818997 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 1.0e-26 124.0 148 48.0
C02p56560 Brassica napus HOM05D004226 ORTHO05D004842 1.3e-26 123.6 135 47.4
Carub.0008s0806 Capsella rubella HOM05D004226 ORTHO05D004842 1.7e-26 123.2 139 51.1
A06p39150 Brassica napus HOM05D004226 ORTHO05D004842 2.9e-26 122.5 153 47.7
AT5G48480 Arabidopsis thaliana HOM05D004226 ORTHO05D004842 5.0e-26 121.7 157 47.1
BraA06t26830Z Brassica rapa HOM05D004226 ORTHO05D004842 1.1e-25 120.6 153 47.1
CAN.G181.39 Capsicum annuum HOM05D004226 ORTHO05D004842 1.1e-25 120.6 145 49.0
BcaC06g30793 Brassica carinata HOM05D004226 ORTHO05D004842 1.4e-25 120.2 146 45.2
Duzib168G0485 Durio zibethinus HOM05D004226 ORTHO05D004842 1.9e-25 119.8 126 51.6
BcaC04g23773 Brassica carinata HOM05D004226 ORTHO05D004842 2.5e-25 119.4 158 45.6
BolC9t53412H Brassica oleracea HOM05D004226 ORTHO05D004842 2.5e-25 119.4 158 45.6
BolC7t44438H Brassica oleracea HOM05D004226 ORTHO05D004842 3.2e-25 119.0 145 45.5
Sed0006210 Sechium edule HOM05D004226 ORTHO05D004842 5.5e-25 118.2 149 47.0
BraA02t08736Z Brassica rapa HOM05D004226 ORTHO05D004842 9.4e-25 117.5 144 47.2
A02p37490 Brassica napus HOM05D004226 ORTHO05D004842 4.7e-24 115.2 136 47.1
C07p39180 Brassica napus HOM05D004226 ORTHO05D004842 1.0e-23 114.0 147 44.9
CDE05G0628 Ceratophyllum demersum HOM05D004226 ORTHO05D004842 8.8e-23 110.9 109 56.0
Lj3g0001126 Lotus japonicus HOM05D004226 ORTHO05D004842 2.0e-22 109.8 143 45.5
Duzib138G0271 Durio zibethinus HOM05D004226 ORTHO05D004842 2.6e-22 109.4 128 47.7
SHI10249 Sapria himalayana HOM05D004226 ORTHO05D004842 3.3e-22 109.0 134 43.3
Duzib205G0826 Durio zibethinus HOM05D004226 ORTHO05D004842 4.4e-22 108.6 142 45.1
AL8G21330 Arabidopsis lyrata HOM05D004226 ORTHO05D004842 1.3e-21 107.1 154 44.8
CARHR183600 Cardamine hirsuta HOM05D004226 ORTHO05D004842 1.3e-21 107.1 147 43.5
Duzib170G0075 Durio zibethinus HOM05D004226 ORTHO05D004842 1.7e-21 106.7 128 50.8
Duzib211G0475 Durio zibethinus HOM05D004226 ORTHO05D004842 1.7e-21 106.7 128 46.9
SMO146G0354 Selaginella moellendorffii HOM05D004226 ORTHO05D004842 1.1e-20 104.0 126 43.7
Mapoly0001s0501 Marchantia polymorpha HOM05D004226 ORTHO05D004842 1.4e-20 103.6 138 42.0
BcaB07g30025 Brassica carinata HOM05D004226 ORTHO05D004842 5.9e-19 98.2 137 46.7
Ca_07469_v3 Cicer arietinum L. HOM05D004226 ORTHO05D004842 1.4e-17 93.6 85 58.8
Ca_30573_v3 Cicer arietinum L. HOM05D004226 ORTHO05D004842 1.4e-17 93.6 85 58.8
Duzib147G0221 Durio zibethinus HOM05D004226 ORTHO05D004842 3.2e-17 92.4 121 44.6
Sc19g0005500 Simmondsia chinensis HOM05D004226 ORTHO05D004842 4.7e-16 88.6 84 53.6
FvH4_2g17810 Fragaria vesca HOM05D004226 ORTHO05D004842 8.0e-16 87.8 152 44.1
Atru.chr6.3547 Acer truncatum HOM05D004226 ORTHO05D004842 1.0e-15 87.4 121 42.1
MD10G1152100 Malus domestica HOM05D004226 ORTHO05D004842 1.4e-15 87.0 147 40.8
FAN24G0678 Fragaria x ananassa HOM05D004226 ORTHO05D004842 1.8e-15 86.7 152 43.4
MD05G1159600 Malus domestica HOM05D004226 ORTHO05D004842 3.0e-15 85.9 171 36.8
BcaB07g30020 Brassica carinata HOM05D004226 ORTHO05D004842 2.6e-14 82.8 102 47.1
Lj2P1154T27 Lonicera japonica HOM05D004226 ORTHO05D004842 4.4e-14 82.0 77 55.8
FAN27G2858 Fragaria x ananassa HOM05D004226 ORTHO05D004842 9.7e-14 80.9 151 40.4
FAN27G3147 Fragaria x ananassa HOM05D004226 ORTHO05D004842 9.7e-14 80.9 151 40.4
FAN15G3314 Fragaria x ananassa HOM05D004226 ORTHO05D004842 1.3e-13 80.5 151 39.7
RcHm_v2.0_Chr6g0282841 Rosa chinensis HOM05D004226 ORTHO05D004842 1.7e-13 80.1 150 40.7
Cfa011865 Carpinus fangiana HOM05D004226 ORTHO05D004842 1.8e-12 76.6 87 51.7
Psat0s337g0040 Pisum sativum HOM05D004226 ORTHO05D004842 4.1e-12 75.5 87 49.4
unitig_0.g1219 Utricularia gibba HOM05D004226 ORTHO05D004842 2.0e-11 73.2 78 47.4
Glyma.14G148600 Glycine max HOM05D004226 ORTHO05D004842 1.0e-10 70.9 69 56.5
BcaC06g31007 Brassica carinata HOM05D004226 ORTHO05D004842 3.8e-10 68.9 147 36.1
Pp3c13_5750 Physcomitrium patens HOM05D004226 ORTHO05D004842 8.5e-10 67.8 140 32.1
SGA_v2.0_scaffold85G26613 Striga asiatica HOM05D005727 ORTHO05D007324 1.9e-09 66.6 64 54.7
SEGI_39221 Sequoiadendron giganteum HOM05D004226 ORTHO05D004842 2.7e-08 62.8 73 46.6
Nn4g25974 Nelumbo nucifera HOM05D066638 ORTHO05D004842 4.7e-08 62.0 52 55.8
SEGI_14551 Sequoiadendron giganteum HOM05D004226 ORTHO05D004842 4.7e-08 62.0 59 50.8
SEGI_24806 Sequoiadendron giganteum HOM05D004226 ORTHO05D004842 4.7e-08 62.0 59 50.8
Nn7g37876 Nelumbo nucifera HOM05D001231 ORTHO05D001012 5.2e-07 58.5 51 54.9
Ciclev10023033m.g Citrus clementina HOM05D004226 ORTHO05D004842 6.7e-07 58.2 56 53.6
Nn7g37465 Nelumbo nucifera HOM05D004226 ORTHO05D004842 8.8e-07 57.8 53 50.9
DCAR_023429 Daucus carota HOM05D057861 ORTHO05D004842 2.0e-06 56.6 151 28.5
FAN06G1571 Fragaria x ananassa HOM05D020336 ORTHO05D022570 2.0e-06 56.6 135 28.9
Rhsim06G0095600 Rhododendron simsii HOM05D003225 ORTHO05D338509 3.3e-06 55.8 64 54.7


User provided reference genes

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