Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g051020 Amaranthus hybridus HOM05D006407 ORTHO05D008079 1.6e-219 765.8 391 100.0
AUR62008121 Chenopodium quinoa HOM05D006407 ORTHO05D008079 1.6e-174 616.3 414 79.7
EL10Ac5g10625 Beta vulgaris HOM05D006407 ORTHO05D008079 2.3e-165 585.9 376 80.9
Sc17g0001660 Simmondsia chinensis HOM05D006407 ORTHO05D008079 2.9e-163 578.9 347 84.4
Hund02795 Selenicereus undatus HOM05D006407 ORTHO05D008079 1.3e-160 570.1 391 77.2
CiPaw.14G043600 Carya illinoinensis HOM05D006407 ORTHO05D008079 5.2e-157 558.1 362 79.6
Gorai.N003300 Gossypium raimondii HOM05D006407 ORTHO05D008079 1.5e-156 556.6 383 76.5
Dinv28811 Davidia involucrata HOM05D006407 ORTHO05D008079 7.5e-156 554.3 406 73.2
Haze_03500 Corylus avellana HOM05D006407 ORTHO05D008079 1.7e-155 553.1 386 75.4
Eucgr.H00725 Eucalyptus grandis HOM05D006407 ORTHO05D008079 2.9e-155 552.4 393 74.3
THA.LOC104802645 Tarenaya hassleriana HOM05D006407 ORTHO05D008079 1.1e-154 550.4 389 75.1
Manes.12G054200 Manihot esculenta HOM05D006407 ORTHO05D008079 1.4e-154 550.1 390 74.1
QL09p046404 Quercus lobata HOM05D006407 ORTHO05D008079 1.4e-154 550.1 401 73.8
Gohir.A07G159200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 2.4e-154 549.3 382 75.7
CARHR183610 Cardamine hirsuta HOM05D006407 ORTHO05D008079 1.2e-153 547.0 385 73.8
Thecc.01G211000 Theobroma cacao HOM05D006407 ORTHO05D008079 1.2e-153 547.0 346 81.2
Cfa010568 Carpinus fangiana HOM05D006407 ORTHO05D008079 1.6e-153 546.6 392 73.7
CsaV3_7G026830 Cucumis sativus L. HOM05D006407 ORTHO05D008079 6.0e-153 544.7 375 74.1
TAR636G1997 Trochodendron aralioides HOM05D006407 ORTHO05D008079 7.8e-153 544.3 394 73.6
Peaxi162Scf00335g00087 Petunia axillaris HOM05D006407 ORTHO05D008079 1.0e-152 543.9 381 74.5
ClCG09G008210 Citrullus lanatus HOM05D006407 ORTHO05D008079 1.7e-152 543.1 375 74.1
Cpa.g.sc8.72 Carica papaya HOM05D006407 ORTHO05D008079 2.3e-152 542.7 393 74.0
Carub.0008s0805 Capsella rubella HOM05D006407 ORTHO05D008079 3.9e-152 542.0 394 72.3
BcaB04g19579 Brassica carinata HOM05D006407 ORTHO05D008079 6.6e-152 541.2 370 74.6
AL8G21320 Arabidopsis lyrata HOM05D006407 ORTHO05D008079 1.1e-151 540.4 383 73.4
A09p04530 Brassica napus HOM05D006407 ORTHO05D008079 1.1e-151 540.4 370 74.3
BraA09t36088Z Brassica rapa HOM05D006407 ORTHO05D008079 1.9e-151 539.7 370 74.3
Prupe.8G190300 Prunus persica HOM05D006407 ORTHO05D008079 1.9e-151 539.7 390 72.6
C09p04840 Brassica napus HOM05D006407 ORTHO05D008079 2.5e-151 539.3 370 74.3
AT5G48470 Arabidopsis thaliana HOM05D006407 ORTHO05D008079 4.3e-151 538.5 383 72.8
Aa31sc527G10 Aethionema arabicum HOM05D006407 ORTHO05D008079 5.6e-151 538.1 383 72.6
TWI18G0256 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 5.6e-151 538.1 390 72.8
BcaC04g23774 Brassica carinata HOM05D006407 ORTHO05D008079 7.3e-151 537.7 370 74.1
BolC9t53411H Brassica oleracea HOM05D006407 ORTHO05D008079 7.3e-151 537.7 370 74.1
Sed0008140 Sechium edule HOM05D006407 ORTHO05D008079 7.3e-151 537.7 393 72.0
Actinidia30017 Actinidia chinensis HOM05D006407 ORTHO05D008079 9.5e-151 537.3 349 78.8
CSS0030734 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 2.1e-150 536.2 396 72.2
TWI36G1400 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 6.2e-150 534.6 358 77.9
Ciclev10015489m.g Citrus clementina HOM05D006407 ORTHO05D008079 1.1e-149 533.9 352 77.6
Thhalv10004357m.g Eutrema salsugineum HOM05D006407 ORTHO05D008079 1.1e-149 533.9 369 74.8
PGR083G0415 Punica granatum HOM05D006407 ORTHO05D008079 1.8e-149 533.1 406 71.9
Aqoxy2G03962 Aquilegia oxysepala HOM05D006407 ORTHO05D008079 6.8e-149 531.2 401 72.8
Hma1.2p1_0161F.1_g071410 Hydrangea macrophylla HOM05D006407 ORTHO05D008079 6.8e-149 531.2 351 78.3
CSS0036527 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 3.4e-148 528.9 396 71.7
GSVIVG01006226001 Vitis vinifera HOM05D006407 ORTHO05D008079 1.3e-147 526.9 347 78.4
FAN15G1719 Fragaria x ananassa HOM05D006407 ORTHO05D008079 2.2e-147 526.2 347 77.8
CANSAT01G1280 Cannabis sativa HOM05D006407 ORTHO05D008079 2.9e-147 525.8 389 72.8
Oeu057833.1 Olea europaea HOM05D006407 ORTHO05D008079 2.9e-147 525.8 394 71.6
RcHm_v2.0_Chr6g0282821 Rosa chinensis HOM05D006407 ORTHO05D008079 2.9e-147 525.8 406 70.4
FvH4_2g17800 Fragaria vesca HOM05D006407 ORTHO05D008079 3.7e-147 525.4 393 71.8
FAN24G2889 Fragaria x ananassa HOM05D006407 ORTHO05D008079 1.1e-146 523.9 393 71.5
FAN27G2095 Fragaria x ananassa HOM05D006407 ORTHO05D008079 1.1e-146 523.9 348 77.6
FAN27G3088 Fragaria x ananassa HOM05D006407 ORTHO05D008079 1.1e-146 523.9 348 77.6
PSO017G7241 Papaver somniferum HOM05D006407 ORTHO05D008079 1.4e-146 523.5 397 72.3
Sopen09g019480 Solanum pennellii HOM05D006407 ORTHO05D008079 3.2e-146 522.3 379 73.4
Sp2g18840 Schrenkiella parvula HOM05D006407 ORTHO05D008079 4.1e-146 521.9 318 83.3
MSTRG.18495 Avicennia marina HOM05D006407 ORTHO05D008079 9.2e-146 520.8 399 71.4
MD10G1151900 Malus domestica HOM05D006407 ORTHO05D008079 1.6e-145 520.0 345 76.5
Potri.002G251400 Populus trichocarpa HOM05D006407 ORTHO05D008079 1.6e-145 520.0 346 76.3
PGSC0003DMG400013943 Solanum tuberosum HOM05D006407 ORTHO05D008079 1.6e-145 520.0 379 72.8
vmacro02816 Vaccinium macrocarpon HOM05D006407 ORTHO05D008079 2.7e-145 519.2 397 69.0
PSO675G1275 Papaver somniferum HOM05D006407 ORTHO05D008079 4.6e-145 518.5 398 72.4
Solyc09g056160.4 Solanum lycopersicum HOM05D006407 ORTHO05D008079 2.3e-144 516.2 379 73.1
ECA247G2281 Erigeron canadensis HOM05D006407 ORTHO05D008079 6.2e-142 508.1 396 69.9
Rhsim13G0052700 Rhododendron simsii HOM05D006407 ORTHO05D008079 8.1e-142 507.7 370 71.1
Cc01_g16130 Coffea canephora HOM05D006407 ORTHO05D008079 1.4e-141 506.9 347 75.2
Gohir.D07G167200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 4.0e-141 505.4 383 71.5
Psat6g036520 Pisum sativum HOM05D006407 ORTHO05D008079 4.0e-141 505.4 343 76.7
COL.COLO4_26571 Corchorus olitorius HOM05D006407 ORTHO05D008079 5.8e-140 501.5 347 75.8
Medtr1g007490 Medicago truncatula HOM05D006407 ORTHO05D008079 1.3e-139 500.4 343 76.4
Lalb_Chr07g0194511 Lupinus albus HOM05D006407 ORTHO05D008079 1.9e-138 496.5 387 70.0
Migut.D00736 Erythranthe guttata HOM05D006407 ORTHO05D008079 1.6e-137 493.4 378 72.2
Lj1C101T0 Lonicera japonica HOM05D006407 ORTHO05D008079 7.8e-137 491.1 349 74.8
Lsat_1_v5_gn_9_16300 Lactuca sativa HOM05D006407 ORTHO05D008079 1.0e-136 490.7 351 74.1
HanXRQChr08g0231421 Helianthus annuus HOM05D006407 ORTHO05D008079 1.7e-136 490.0 352 73.6
Glyma.03G089700 Glycine max HOM05D006407 ORTHO05D008079 5.1e-136 488.4 346 74.6
Lj1g0005258 Lotus japonicus HOM05D006407 ORTHO05D008079 8.6e-136 487.6 345 74.8
Glyma.16G083300 Glycine max HOM05D006407 ORTHO05D008079 1.5e-135 486.9 382 69.6
arahy.Tifrunner.gnm1.ann1.FHDW0K Arachis hypogaea HOM05D006407 ORTHO05D008079 1.8e-133 479.9 342 73.1
arahy.Tifrunner.gnm1.ann1.Q8L9VW Arachis hypogaea HOM05D006407 ORTHO05D008079 1.8e-133 479.9 342 73.1
ATR0686G167 Amborella trichopoda HOM05D006407 ORTHO05D008079 2.4e-133 479.6 350 70.3
Nitab4.5_0000038g0130 Nicotiana tabacum HOM05D006407 ORTHO05D008079 5.2e-133 478.4 399 65.9
Nitab4.5_0003859g0020 Nicotiana tabacum HOM05D001236 ORTHO05D001090 5.8e-132 474.9 348 72.4
Phvul.008G108300 Phaseolus vulgaris HOM05D006407 ORTHO05D008079 4.9e-131 471.9 342 71.1
HPP92_024258 Vanilla planifolia HOM05D006407 ORTHO05D008079 8.4e-131 471.1 377 67.6
Ca_12772_v3 Cicer arietinum L. HOM05D006407 ORTHO05D008079 1.0e-128 464.2 294 81.0
unitig_64.g29771 Utricularia gibba HOM05D006407 ORTHO05D008079 8.7e-128 461.1 316 74.7
Zm00001eb169280 Zea mays HOM05D006407 ORTHO05D008079 3.3e-127 459.1 318 71.7
SalBow6G2639 Salvia bowleyana HOM05D006407 ORTHO05D008079 2.6e-124 449.5 292 78.1
SGA_v2.0_scaffold29G12072 Striga asiatica HOM05D006407 ORTHO05D008079 2.3e-120 436.4 444 57.0
Sabra02G0191100 Salix brachista HOM05D006407 ORTHO05D008079 3.0e-120 436.0 315 71.4
Atru.chr6.3545 Acer truncatum HOM05D006407 ORTHO05D008079 5.1e-120 435.3 295 76.9
VMungo1383G2551 Vigna mungo HOM05D006407 ORTHO05D008079 8.7e-112 407.9 341 63.9
Os11g0425300 Oryza sativa ssp. japonica HOM05D006407 ORTHO05D008079 2.0e-108 396.7 285 70.2
SEGI_39839 Sequoiadendron giganteum HOM05D006407 ORTHO05D008079 9.6e-103 377.9 335 60.9
CDE09G0438 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 8.4e-99 364.8 239 79.1
Nn1g08257 Nelumbo nucifera HOM05D006407 ORTHO05D008079 7.2e-82 308.5 225 73.8
Duzib138G1048 Durio zibethinus HOM05D006407 ORTHO05D008079 8.8e-80 301.6 376 49.5
Mapoly0125s0038 Marchantia polymorpha HOM05D006407 ORTHO05D008079 8.8e-80 301.6 325 48.0
BolC7t44437H Brassica oleracea HOM05D006407 ORTHO05D008079 5.7e-79 298.9 295 61.7
unitig_62.g23866 Utricularia gibba HOM05D006407 ORTHO05D008079 7.4e-79 298.5 282 59.6
HPP92_024262 Vanilla planifolia HOM05D006407 ORTHO05D008079 4.8e-78 295.8 199 74.9
SMO367G1011 Selaginella moellendorffii HOM05D006407 ORTHO05D008079 3.1e-77 293.1 315 49.8
C07p39170 Brassica napus HOM05D006407 ORTHO05D008079 5.0e-75 285.8 282 60.6
Pp3c19_21450 Physcomitrium patens HOM05D006407 ORTHO05D008079 5.0e-75 285.8 329 46.8
MBI11_g07407_MAGBIO Magnolia biondii HOM05D006407 ORTHO05D003073 2.2e-70 270.4 906 28.8
BcaC06g30794 Brassica carinata HOM05D006407 ORTHO05D008079 2.4e-69 266.9 503 38.8
AagrBONN_evm.TU.Sc2ySwM_368.2294 Anthoceros agrestis HOM05D006407 ORTHO05D008079 1.6e-68 264.2 236 55.1
AUR62028699 Chenopodium quinoa HOM05D006407 ORTHO05D008079 8.0e-65 251.9 141 87.9
Nn1g08232 Nelumbo nucifera HOM05D006407 ORTHO05D008079 6.3e-62 242.3 157 77.7
DCAR_004768 Daucus carota HOM05D006407 ORTHO05D008079 4.6e-44 183.0 157 64.3
BraA06t26831Z Brassica rapa HOM05D006407 ORTHO05D008079 3.9e-43 179.9 124 75.0
Migut.D00733 Erythranthe guttata HOM05D006407 ORTHO05D008079 1.2e-41 174.9 103 85.4
A06p39160 Brassica napus HOM05D006407 ORTHO05D008079 3.5e-36 156.8 177 52.5
CBR_g12604 Chara braunii HOM05D001724 ORTHO05D007284 3.1e-32 143.7 328 32.3
CDE02G0544 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 6.2e-25 119.4 82 73.2
Lsat_1_v5_gn_9_60420 Lactuca sativa HOM05D001780 ORTHO05D008079 6.4e-14 82.8 46 84.8
MCO11G451 Micromonas commoda HOM05D006407 ORTHO05D008079 1.4e-13 81.6 324 26.2
arahy.Tifrunner.gnm1.ann1.91BFZF Arachis hypogaea HOM05D006407 ORTHO05D008079 7.1e-13 79.3 79 55.7
Oeu032606.1 Olea europaea HOM05D006407 ORTHO05D008079 2.7e-12 77.4 48 75.0
MD05G1159200 Malus domestica HOM05D006407 ORTHO05D008079 3.5e-12 77.0 49 73.5
Cre09.g393800 Chlamydomonas reinhardtii HOM05D006407 ORTHO05D008079 8.7e-11 72.4 348 25.0
arahy.Tifrunner.gnm1.ann1.6HQ4SR Arachis hypogaea HOM05D006407 ORTHO05D008079 3.1e-08 63.9 72 52.8
MD05G1159400 Malus domestica HOM05D006407 ORTHO05D008079 4.5e-07 60.1 58 46.6


User provided reference genes

Program Settings