Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g050830 Amaranthus hybridus HOM05D006548 ORTHO05D008064 9.9e-86 320.1 163 100.0
AUR62028648 Chenopodium quinoa HOM05D006548 ORTHO05D008064 1.0e-66 256.9 167 77.8
Potri.002G239000 Populus trichocarpa HOM05D006548 ORTHO05D008064 3.9e-58 228.4 164 73.2
HanXRQChr08g0231851 Helianthus annuus HOM05D006548 ORTHO05D008064 6.7e-58 227.6 163 73.0
MBI08_g14954_MAGBIO Magnolia biondii HOM05D006659 ORTHO05D008064 6.7e-58 227.6 162 74.7
Peaxi162Scf00372g00041 Petunia axillaris HOM05D006548 ORTHO05D008064 6.7e-58 227.6 163 74.2
Rhsim13G0053600 Rhododendron simsii HOM05D006548 ORTHO05D008064 6.7e-58 227.6 163 74.2
Hma1.2p1_0161F.1_g071510 Hydrangea macrophylla HOM05D006548 ORTHO05D008064 8.8e-58 227.3 164 71.3
Sabra14G0135300 Salix brachista HOM05D006548 ORTHO05D008064 2.0e-57 226.1 163 73.0
Lj2P1115T39 Lonicera japonica HOM05D006548 ORTHO05D008064 3.3e-57 225.3 164 70.7
Nitab4.5_0011925g0010 Nicotiana tabacum HOM05D006548 ORTHO05D008064 3.3e-57 225.3 164 71.3
PGR083G0463 Punica granatum HOM05D006548 ORTHO05D008064 3.3e-57 225.3 163 71.8
Manes.13G055300 Manihot esculenta HOM05D006548 ORTHO05D008064 4.4e-57 224.9 164 72.6
PSO017G5831 Papaver somniferum HOM05D006548 ORTHO05D008064 4.4e-57 224.9 163 74.2
PSO675G8742 Papaver somniferum HOM05D006548 ORTHO05D008064 4.4e-57 224.9 163 73.6
Manes.12G059600 Manihot esculenta HOM05D006548 ORTHO05D008064 5.7e-57 224.6 165 72.7
HPP92_002744 Vanilla planifolia HOM05D006548 ORTHO05D008064 1.3e-56 223.4 163 70.6
Nitab4.5_0002311g0090 Nicotiana tabacum HOM05D006548 ORTHO05D008064 1.7e-56 223.0 164 72.0
TAR362G1118 Trochodendron aralioides HOM05D006548 ORTHO05D008064 3.7e-56 221.9 169 69.8
MSTRG.17967 Avicennia marina HOM05D006548 ORTHO05D008064 4.8e-56 221.5 163 71.2
CSS0021481 Camellia sinensis var. sinensis HOM05D006548 ORTHO05D008064 4.8e-56 221.5 164 70.7
Potri.014G177100 Populus trichocarpa HOM05D006548 ORTHO05D008064 4.8e-56 221.5 164 72.0
Sabra02G0182000 Salix brachista HOM05D006548 ORTHO05D008064 4.8e-56 221.5 164 73.2
DCAR_030798 Daucus carota HOM05D006548 ORTHO05D008064 1.1e-55 220.3 163 71.2
Sed0004612 Sechium edule HOM05D006548 ORTHO05D008064 1.1e-55 220.3 163 69.3
PGSC0003DMG400027686 Solanum tuberosum HOM05D006548 ORTHO05D008064 1.4e-55 219.9 163 71.8
Cc01_g16030 Coffea canephora HOM05D006548 ORTHO05D008064 1.8e-55 219.5 165 70.3
Nitab4.5_0001348g0010 Nicotiana tabacum HOM05D006548 ORTHO05D008064 1.8e-55 219.5 168 71.4
Nitab4.5_0007144g0040 Nicotiana tabacum HOM05D006548 ORTHO05D008064 1.8e-55 219.5 168 71.4
Sopen06g034400 Solanum pennellii HOM05D006548 ORTHO05D008064 2.4e-55 219.2 163 71.8
CiPaw.13G058400 Carya illinoinensis HOM05D006548 ORTHO05D008064 3.1e-55 218.8 158 74.1
A05p40730 Brassica napus HOM05D006548 ORTHO05D008064 4.1e-55 218.4 158 72.8
BraA05t22804Z Brassica rapa HOM05D006548 ORTHO05D008064 4.1e-55 218.4 158 72.8
BolC5t34638H Brassica oleracea HOM05D006548 ORTHO05D008064 5.3e-55 218.0 159 73.6
AL3G18800 Arabidopsis lyrata HOM05D006548 ORTHO05D008064 1.5e-54 216.5 159 69.8
AT3G07480 Arabidopsis thaliana HOM05D006548 ORTHO05D008064 1.5e-54 216.5 159 69.8
vmacro02826 Vaccinium macrocarpon HOM05D006548 ORTHO05D008064 1.5e-54 216.5 166 70.5
Sp3g06390 Schrenkiella parvula HOM05D006548 ORTHO05D008064 2.0e-54 216.1 163 69.9
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 2.6e-54 215.7 161 69.6
C05p59840 Brassica napus HOM05D006548 ORTHO05D008064 3.5e-54 215.3 159 72.3
Carub.0003s0703 Capsella rubella HOM05D006548 ORTHO05D008064 3.5e-54 215.3 159 70.4
COL.COLO4_06931 Corchorus olitorius HOM05D006548 ORTHO05D008064 3.5e-54 215.3 164 68.9
Oeu051515.1 Olea europaea HOM05D006548 ORTHO05D008064 4.5e-54 214.9 163 69.9
SGA_v2.0_scaffold95G28706 Striga asiatica HOM05D006548 ORTHO05D008064 4.5e-54 214.9 164 67.7
BcaC05g29539 Brassica carinata HOM05D006548 ORTHO05D008064 5.9e-54 214.5 160 71.9
CAN.G874.34 Capsicum annuum HOM05D006548 ORTHO05D008064 7.7e-54 214.2 166 70.5
Gohir.D07G202600 Gossypium hirsutum HOM05D006548 ORTHO05D008064 7.7e-54 214.2 163 68.7
Gorai.001G228000 Gossypium raimondii HOM05D006548 ORTHO05D008064 7.7e-54 214.2 163 68.7
Nn3g18599 Nelumbo nucifera HOM05D006548 ORTHO05D008064 1.0e-53 213.8 164 69.5
VMungo1383G2587 Vigna mungo HOM05D006548 ORTHO05D008064 1.0e-53 213.8 162 69.1
Migut.N00670 Erythranthe guttata HOM05D006548 ORTHO05D008064 1.3e-53 213.4 164 65.2
Gorai.007G160300 Gossypium raimondii HOM05D006548 ORTHO05D008064 1.3e-53 213.4 163 68.7
Gohir.A11G143200 Gossypium hirsutum HOM05D006548 ORTHO05D008064 1.7e-53 213.0 163 68.7
ClCG09G007890 Citrullus lanatus HOM05D006548 ORTHO05D008064 2.2e-53 212.6 166 69.9
Ciclev10017030m.g Citrus clementina HOM05D006548 ORTHO05D008064 2.2e-53 212.6 163 68.1
Aqoxy2G04054 Aquilegia oxysepala HOM05D006548 ORTHO05D008064 2.9e-53 212.2 161 70.8
ECA247G0922 Erigeron canadensis HOM05D006548 ORTHO05D008064 5.0e-53 211.5 163 69.3
Thhalv10021677m.g Eutrema salsugineum HOM05D006548 ORTHO05D008064 5.0e-53 211.5 159 69.8
Solyc06g007630.1 Solanum lycopersicum HOM05D006548 ORTHO05D008064 8.5e-53 210.7 163 68.7
Sopen06g002520 Solanum pennellii HOM05D006548 ORTHO05D008064 8.5e-53 210.7 163 68.7
THA.LOC104819003 Tarenaya hassleriana HOM05D006548 ORTHO05D008064 8.5e-53 210.7 165 67.9
PGSC0003DMG400020639 Solanum tuberosum HOM05D006548 ORTHO05D008064 1.1e-52 210.3 163 69.3
Duzib138G0849 Durio zibethinus HOM05D006548 ORTHO05D008064 1.5e-52 209.9 163 69.3
CSS0032607 Camellia sinensis var. sinensis HOM05D006548 ORTHO05D008064 1.9e-52 209.5 166 68.7
Gohir.D11G149500 Gossypium hirsutum HOM05D006548 ORTHO05D008064 1.9e-52 209.5 163 68.7
Cfa010631 Carpinus fangiana HOM05D006548 ORTHO05D008064 2.5e-52 209.1 163 69.9
Lj1g0008534 Lotus japonicus HOM05D006548 ORTHO05D008064 2.5e-52 209.1 163 68.7
Glyma.08G343100 Glycine max HOM05D006548 ORTHO05D008064 3.2e-52 208.8 161 64.6
Atru.chr6.3534 Acer truncatum HOM05D006548 ORTHO05D008064 5.5e-52 208.0 165 67.3
Lalb_Chr01g0021941 Lupinus albus HOM05D006548 ORTHO05D008064 5.5e-52 208.0 162 67.9
EL10Ac5g10597 Beta vulgaris HOM05D006548 ORTHO05D008064 7.2e-52 207.6 151 72.2
Aa31LG5G18040 Aethionema arabicum HOM05D006548 ORTHO05D008064 9.4e-52 207.2 162 67.3
arahy.Tifrunner.gnm1.ann1.I0E60T Arachis hypogaea HOM05D006548 ORTHO05D008064 9.4e-52 207.2 164 69.5
Nn4g25121 Nelumbo nucifera HOM05D006548 ORTHO05D008064 9.4e-52 207.2 163 67.5
Phvul.008G137800 Phaseolus vulgaris HOM05D006548 ORTHO05D008064 9.4e-52 207.2 167 65.3
CARHR082130 Cardamine hirsuta HOM05D006548 ORTHO05D008064 2.1e-51 206.1 162 66.0
BcaB03g14699 Brassica carinata HOM05D006548 ORTHO05D008064 2.7e-51 205.7 155 65.2
Psat3g151760 Pisum sativum HOM05D006548 ORTHO05D008064 2.7e-51 205.7 162 69.1
Sc05g0001680 Simmondsia chinensis HOM05D006548 ORTHO05D008064 6.1e-51 204.5 147 76.9
RcHm_v2.0_Chr6g0282621 Rosa chinensis HOM05D006548 ORTHO05D008064 8.0e-51 204.1 167 65.9
Lalb_Chr03g0040981 Lupinus albus HOM05D006548 ORTHO05D008064 1.0e-50 203.8 161 66.5
Haze_03573 Corylus avellana HOM05D006548 ORTHO05D008064 1.4e-50 203.4 165 67.3
arahy.Tifrunner.gnm1.ann1.C7NXRU Arachis hypogaea HOM05D006548 ORTHO05D008064 1.8e-50 203.0 164 68.3
Ca_07442_v3 Cicer arietinum L. HOM05D006548 ORTHO05D008064 2.3e-50 202.6 161 65.2
TPR.G26806 Trifolium pratense HOM05D006548 ORTHO05D008064 2.3e-50 202.6 161 65.2
Prupe.8G188900 Prunus persica HOM05D006548 ORTHO05D008064 3.9e-50 201.8 164 65.9
FAN27G0042 Fragaria x ananassa HOM05D006548 ORTHO05D008064 6.7e-50 201.1 141 70.9
FAN27G0390 Fragaria x ananassa HOM05D006548 ORTHO05D008064 6.7e-50 201.1 141 70.9
MELO3C015717.2 Cucumis melo HOM05D006548 ORTHO05D008064 8.8e-50 200.7 166 63.9
FAN24G3284 Fragaria x ananassa HOM05D006548 ORTHO05D008064 8.8e-50 200.7 140 70.7
Duzib211G0675 Durio zibethinus HOM05D006548 ORTHO05D008064 1.1e-49 200.3 164 65.2
Glyma.18G153900 Glycine max HOM05D006548 ORTHO05D008064 1.1e-49 200.3 161 64.6
FvH4_2g17650 Fragaria vesca HOM05D006548 ORTHO05D008064 2.0e-49 199.5 141 70.2
Medtr7g051230 Medicago truncatula HOM05D006548 ORTHO05D008064 7.4e-49 197.6 161 64.6
TWI75G1339 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 9.7e-49 197.2 163 65.0
QL09p047049 Quercus lobata HOM05D006548 ORTHO05D008064 1.3e-48 196.8 122 74.6
Zm00001eb102720 Zea mays HOM05D006548 ORTHO05D008064 1.7e-48 196.4 165 63.6
MD10G1150500 Malus domestica HOM05D006548 ORTHO05D008064 2.2e-48 196.1 163 66.3
Lsat_1_v5_gn_9_16480 Lactuca sativa HOM05D006548 ORTHO05D008064 2.8e-48 195.7 168 64.3
TWI18G0731 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 4.8e-48 194.9 163 65.6
ATR0824G029 Amborella trichopoda HOM05D006548 ORTHO05D008064 6.3e-48 194.5 149 64.4
TWI36G0698 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 1.4e-47 193.4 163 64.4
Os09g0514600 Oryza sativa ssp. japonica HOM05D006548 ORTHO05D008064 1.8e-47 193.0 165 64.2
GSVIVG01003797001 Vitis vinifera HOM05D006548 ORTHO05D008064 5.3e-47 191.4 119 71.4
unitig_61.g26345 Utricularia gibba HOM05D006548 ORTHO05D008064 2.0e-46 189.5 164 59.1
Thecc.01G209700 Theobroma cacao HOM05D006548 ORTHO05D008064 2.9e-45 185.7 148 69.6
CANSAT01G2941 Cannabis sativa HOM05D006548 ORTHO05D008064 6.5e-45 184.5 167 58.7
Zm00001eb318350 Zea mays HOM05D006548 ORTHO05D008064 3.2e-44 182.2 171 60.2
CsaV3_7G027180 Cucumis sativus L. HOM05D006548 ORTHO05D008064 1.8e-42 176.4 148 64.2
Gohir.A07G196200 Gossypium hirsutum HOM05D006548 ORTHO05D008064 1.6e-35 153.3 91 80.2
Pp3c2_31000 Physcomitrium patens HOM05D006548 ORTHO05D008064 8.3e-32 141.0 122 54.1
CDE12G0850 Ceratophyllum demersum HOM05D006548 ORTHO05D008064 3.8e-29 132.1 77 74.0
BcaC05g29538 Brassica carinata HOM05D006548 ORTHO05D008064 1.5e-28 130.2 106 69.8
AagrBONN_evm.TU.Sc2ySwM_362.984 Anthoceros agrestis HOM05D006548 ORTHO05D008064 1.2e-27 127.1 161 41.6
Ciclev10013747m.g Citrus clementina HOM05D006548 ORTHO05D008064 8.0e-27 124.4 82 75.6
Mapoly0085s0036 Marchantia polymorpha HOM05D006548 ORTHO05D008064 1.3e-24 117.1 130 46.2
C03p67920 Brassica napus HOM05D006548 ORTHO05D008064 2.2e-24 116.3 89 66.3
BcaC01g02172 Brassica carinata HOM05D006548 ORTHO05D008064 1.4e-23 113.6 89 65.2
SEGI_16405 Sequoiadendron giganteum HOM05D002489 ORTHO05D002653 9.8e-17 90.9 79 60.8
Actinidia30005 Actinidia chinensis HOM05D006548 ORTHO05D008064 2.3e-13 79.7 170 43.5
CBR_g34314 Chara braunii HOM05D006548 ORTHO05D008064 8.6e-13 77.8 151 33.1
BolC3t19017H Brassica oleracea HOM05D006548 ORTHO05D008064 1.1e-12 77.4 47 72.3
BraA03t13759Z Brassica rapa HOM05D006548 ORTHO05D008064 1.2e-11 73.9 47 72.3
Mapoly0113s0043 Marchantia polymorpha HOM05D006548 ORTHO05D008064 1.4e-10 70.5 131 34.4
SMO119G0279 Selaginella moellendorffii HOM05D006548 ORTHO05D008064 1.8e-10 70.1 118 33.9


User provided reference genes

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