Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g050730 Amaranthus hybridus HOM05D000359 ORTHO05D000251 1.9e-225 786.2 618 100.0
EL10Ac5g10578 Beta vulgaris HOM05D000359 ORTHO05D000251 1.3e-106 391.3 586 63.7
AUR62028632 Chenopodium quinoa HOM05D000359 ORTHO05D000251 7.3e-97 359.0 563 53.3
AUR62008056 Chenopodium quinoa HOM05D000359 ORTHO05D000251 4.0e-71 273.5 601 44.3
Hund02812 Selenicereus undatus HOM05D000359 ORTHO05D000251 8.2e-64 249.2 536 48.9
Hund09490 Selenicereus undatus HOM05D000359 ORTHO05D000251 9.7e-57 225.7 532 43.8
Sc17g0001510 Simmondsia chinensis HOM05D000359 ORTHO05D000251 4.1e-47 193.7 595 43.0
Peaxi162Scf00235g00010 Petunia axillaris HOM05D000359 ORTHO05D000251 1.7e-24 118.6 298 38.3
Manes.12G054400 Manihot esculenta HOM05D000359 ORTHO05D000251 1.1e-23 115.9 312 41.7
TWI75G1067 Tripterygium wilfordii HOM05D000359 ORTHO05D000251 4.1e-23 114.0 316 38.3
Sopen06g034270 Solanum pennellii HOM05D000359 ORTHO05D000251 9.1e-23 112.8 324 37.0
Lsat_1_v5_gn_5_176380 Lactuca sativa HOM05D000359 ORTHO05D000251 2.0e-22 111.7 323 35.9
Solyc06g082910.3 Solanum lycopersicum HOM05D000359 ORTHO05D000251 1.7e-21 108.6 317 36.9
Lsat_1_v5_gn_9_17041 Lactuca sativa HOM05D000359 ORTHO05D000251 2.3e-21 108.2 431 32.5
Nitab4.5_0001177g0060 Nicotiana tabacum HOM05D000359 ORTHO05D000251 2.3e-21 108.2 330 42.7
CiPaw.13G057100 Carya illinoinensis HOM05D000359 ORTHO05D000251 2.9e-21 107.8 311 37.3
Cpa.g.sc8.30 Carica papaya HOM05D000359 ORTHO05D000251 3.8e-21 107.5 360 34.2
Duzib211G0020 Durio zibethinus HOM05D000359 ORTHO05D000251 5.0e-21 107.1 290 35.2
Dinv33226 Davidia involucrata HOM05D000359 ORTHO05D000251 8.6e-21 106.3 420 37.6
Dinv18307 Davidia involucrata HOM05D000359 ORTHO05D000251 3.3e-20 104.4 321 38.6
CANSAT25G1392 Cannabis sativa HOM05D000359 ORTHO05D000251 4.2e-20 104.0 328 37.2
CANSAT25G3895 Cannabis sativa HOM05D000359 ORTHO05D000251 4.2e-20 104.0 328 37.2
PGSC0003DMG400027669 Solanum tuberosum HOM05D000359 ORTHO05D000251 4.2e-20 104.0 298 37.2
MBI07_g36450_MAGBIO Magnolia biondii HOM05D000359 ORTHO05D000251 5.5e-20 103.6 308 39.6
Sopen09g015730 Solanum pennellii HOM05D000359 ORTHO05D000251 9.5e-20 102.8 289 36.3
Nn1g09516 Nelumbo nucifera HOM05D000359 ORTHO05D000251 1.2e-19 102.4 312 35.9
Nn1g09518 Nelumbo nucifera HOM05D000359 ORTHO05D000251 1.2e-19 102.4 312 35.9
Solyc09g042740.4 Solanum lycopersicum HOM05D000359 ORTHO05D000251 2.8e-19 101.3 281 36.7
CAN.G253.10 Capsicum annuum HOM05D000359 ORTHO05D000251 6.1e-19 100.1 308 45.5
Nitab4.5_0001348g0100 Nicotiana tabacum HOM05D000359 ORTHO05D000251 1.8e-18 98.6 314 34.1
CSS0021992 Camellia sinensis var. sinensis HOM05D000359 ORTHO05D000251 4.0e-18 97.4 324 40.4
TAR636G3141 Trochodendron aralioides HOM05D000359 ORTHO05D000251 4.0e-18 97.4 312 41.3
Sabra02G0183000 Salix brachista HOM05D000359 ORTHO05D000251 6.8e-18 96.7 299 37.8
Nn7g37502 Nelumbo nucifera HOM05D000359 ORTHO05D000251 8.9e-18 96.3 351 38.7
Potri.002G240232 Populus trichocarpa HOM05D000359 ORTHO05D000251 3.4e-17 94.4 311 37.3
FAN27G2587 Fragaria x ananassa HOM05D000359 ORTHO05D000251 4.4e-17 94.0 294 43.2
SGA_v2.0_scaffold158G37523 Striga asiatica HOM05D000359 ORTHO05D000251 4.4e-17 94.0 334 36.8
Actinidia18407 Actinidia chinensis HOM05D000359 ORTHO05D000251 5.7e-17 93.6 257 40.1
FAN15G1932 Fragaria x ananassa HOM05D000359 ORTHO05D000251 5.7e-17 93.6 212 49.1
Cc01_g15790 Coffea canephora HOM05D000359 ORTHO05D000251 7.5e-17 93.2 474 33.8
Glyma.16G027400 Glycine max HOM05D000359 ORTHO05D000251 7.5e-17 93.2 307 34.9
MBI10_g10332_MAGBIO Magnolia biondii HOM05D000359 ORTHO05D000251 7.5e-17 93.2 325 39.1
Dinv28785 Davidia involucrata HOM05D000359 ORTHO05D000251 1.7e-16 92.0 447 38.5
ClCG07G002460 Citrullus lanatus HOM05D000359 ORTHO05D000251 6.3e-16 90.1 296 37.5
Prupe.8G185400 Prunus persica HOM05D000359 ORTHO05D000251 6.3e-16 90.1 327 44.0
Cc03_g15040 Coffea canephora HOM05D000359 ORTHO05D000251 1.1e-15 89.4 209 42.1
GSVIVG01038194001 Vitis vinifera HOM05D000359 ORTHO05D000251 1.1e-15 89.4 294 37.4
Phvul.008G050300 Phaseolus vulgaris HOM05D000359 ORTHO05D000251 1.4e-15 89.0 324 34.6
arahy.Tifrunner.gnm1.ann1.CYZ0T8 Arachis hypogaea HOM05D000359 ORTHO05D000251 1.8e-15 88.6 324 44.8
Sabra14G0133800 Salix brachista HOM05D000359 ORTHO05D000251 1.8e-15 88.6 239 38.9
MELO3C022738.2 Cucumis melo HOM05D000359 ORTHO05D000251 2.4e-15 88.2 312 39.7
DCAR_012708 Daucus carota HOM05D000359 ORTHO05D000251 2.4e-15 88.2 296 43.9
TAR633G0737 Trochodendron aralioides HOM05D000359 ORTHO05D000251 2.4e-15 88.2 213 43.7
VMungo1383G2126 Vigna mungo HOM05D000359 ORTHO05D000251 3.2e-15 87.8 314 32.8
TWI18G0409 Tripterygium wilfordii HOM05D000359 ORTHO05D000251 4.1e-15 87.4 317 36.9
unitig_60.g25696 Utricularia gibba HOM05D000359 ORTHO05D000251 4.1e-15 87.4 310 33.5
HanXRQChr01g0014191 Helianthus annuus HOM05D000359 ORTHO05D000251 5.4e-15 87.0 304 34.9
Manes.01G017600 Manihot esculenta HOM05D000359 ORTHO05D000251 5.4e-15 87.0 256 35.5
CsaV3_3G030240 Cucumis sativus L. HOM05D000359 ORTHO05D000251 7.0e-15 86.7 283 38.2
arahy.Tifrunner.gnm1.ann1.U9FET0 Arachis hypogaea HOM05D000359 ORTHO05D000251 1.2e-14 85.9 324 44.1
vmacro14680 Vaccinium macrocarpon HOM05D000359 ORTHO05D000251 1.2e-14 85.9 310 38.4
THA.LOC104826645 Tarenaya hassleriana HOM05D000359 ORTHO05D000251 2.0e-14 85.1 309 35.9
Duzib138G1072 Durio zibethinus HOM05D000359 ORTHO05D000251 2.7e-14 84.7 424 37.0
Manes.05G132200 Manihot esculenta HOM05D000359 ORTHO05D000251 2.7e-14 84.7 256 35.5
QL09p045625 Quercus lobata HOM05D000359 ORTHO05D000251 2.7e-14 84.7 303 38.3
Rhsim01G0246900 Rhododendron simsii HOM05D000359 ORTHO05D000251 3.5e-14 84.3 229 35.4
Thecc.01G206000 Theobroma cacao HOM05D000359 ORTHO05D000251 3.5e-14 84.3 300 41.7
Gohir.D02G007300 Gossypium hirsutum HOM05D000359 ORTHO05D000251 5.9e-14 83.6 324 29.3
unitig_0.g224 Utricularia gibba HOM05D000359 ORTHO05D000251 5.9e-14 83.6 416 33.7
Gohir.A02G007500 Gossypium hirsutum HOM05D000359 ORTHO05D000251 1.3e-13 82.4 321 29.6
FvH4_2g17360 Fragaria vesca HOM05D000359 ORTHO05D000251 1.7e-13 82.0 460 37.4
Peaxi162Scf01242g00032 Petunia axillaris HOM05D000359 ORTHO05D000251 1.7e-13 82.0 207 45.4
RcHm_v2.0_Chr6g0281991 Rosa chinensis HOM05D000359 ORTHO05D000251 1.7e-13 82.0 449 43.9
Sed0007364 Sechium edule HOM05D000359 ORTHO05D000251 1.7e-13 82.0 284 37.3
FAN24G3315 Fragaria x ananassa HOM05D000359 ORTHO05D000251 2.3e-13 81.6 315 41.0
Haze_03534 Corylus avellana HOM05D000359 ORTHO05D000251 2.9e-13 81.3 423 31.0
Haze_03539 Corylus avellana HOM05D000359 ORTHO05D000251 2.9e-13 81.3 423 31.0
Ca_08036_v3 Cicer arietinum L. HOM05D000359 ORTHO05D000251 3.9e-13 80.9 317 29.7
MD05G1152500 Malus domestica HOM05D000359 ORTHO05D000251 5.0e-13 80.5 319 37.9
Gorai.005G008700 Gossypium raimondii HOM05D000359 ORTHO05D000251 6.6e-13 80.1 321 29.0
PSO017G6286 Papaver somniferum HOM05D000359 ORTHO05D000251 1.1e-12 79.3 327 33.0
CSS0006580 Camellia sinensis var. sinensis HOM05D000359 ORTHO05D000251 1.5e-12 79.0 229 38.0
HanXRQChr08g0231521 Helianthus annuus HOM05D000359 ORTHO05D000251 1.5e-12 79.0 249 40.2
Glyma.09G246200 Glycine max HOM05D000359 ORTHO05D000251 2.5e-12 78.2 262 36.6
PSO675G8501 Papaver somniferum HOM05D000359 ORTHO05D000251 2.5e-12 78.2 328 33.5
Phvul.010G110900 Phaseolus vulgaris HOM05D000359 ORTHO05D000251 2.5e-12 78.2 510 31.4
CiPaw.14G044500 Carya illinoinensis HOM05D000359 ORTHO05D000251 3.3e-12 77.8 321 36.4
Gorai.001G100900 Gossypium raimondii HOM05D000359 ORTHO05D000251 4.3e-12 77.4 295 38.6
Nitab4.5_0004982g0020 Nicotiana tabacum HOM05D000359 ORTHO05D000251 4.3e-12 77.4 314 34.1
Sopen12g009770 Solanum pennellii HOM05D000359 ORTHO05D000251 5.6e-12 77.0 354 32.8
MD10G1147000 Malus domestica HOM05D000359 ORTHO05D000251 7.3e-12 76.6 250 44.0
Lalb_Chr10g0100251 Lupinus albus HOM05D000359 ORTHO05D000251 1.2e-11 75.9 318 39.9
TAR362G0283 Trochodendron aralioides HOM05D000359 ORTHO05D000251 1.2e-11 75.9 221 33.9
TAR365G0084 Trochodendron aralioides HOM05D000359 ORTHO05D000251 1.2e-11 75.9 281 32.7
Gorai.007G161600 Gossypium raimondii HOM05D000359 ORTHO05D000251 1.6e-11 75.5 323 40.2
CiPaw.01G198900 Carya illinoinensis HOM05D000359 ORTHO05D000251 2.8e-11 74.7 308 35.1
Ca_26628_v3 Cicer arietinum L. HOM05D000359 ORTHO05D000251 2.8e-11 74.7 321 34.3
COL.COLO4_34291 Corchorus olitorius HOM05D000359 ORTHO05D000251 2.8e-11 74.7 310 43.9
Cfa022630 Carpinus fangiana HOM05D000359 ORTHO05D000251 6.1e-11 73.6 293 37.5
Solyc12g019480.3 Solanum lycopersicum HOM05D000359 ORTHO05D000251 8.0e-11 73.2 354 32.8
Actinidia34527 Actinidia chinensis HOM05D000359 ORTHO05D000251 1.0e-10 72.8 322 33.2
CAN.G415.7 Capsicum annuum HOM05D000359 ORTHO05D000251 1.4e-10 72.4 231 35.5
Eucgr.H00282 Eucalyptus grandis HOM05D000359 ORTHO05D000251 1.4e-10 72.4 267 37.5
Lalb_Chr04g0254551 Lupinus albus HOM05D000359 ORTHO05D000251 1.4e-10 72.4 289 37.4
TPR.G28105 Trifolium pratense HOM05D000359 ORTHO05D000251 2.3e-10 71.6 346 33.8
Duzib133G0488 Durio zibethinus HOM05D000359 ORTHO05D000251 3.1e-10 71.2 290 42.8
Gohir.A07G089300 Gossypium hirsutum HOM05D000359 ORTHO05D000251 3.1e-10 71.2 308 35.1
Medtr8g027995 Medicago truncatula HOM05D000359 ORTHO05D000251 5.2e-10 70.5 306 34.3
VMungo0331G1242 Vigna mungo HOM05D000359 ORTHO05D000251 8.9e-10 69.7 552 32.4
CSS0045338 Camellia sinensis var. sinensis HOM05D000359 ORTHO05D000251 1.2e-09 69.3 109 49.5
Glyma.18G246800 Glycine max HOM05D000359 ORTHO05D000251 1.2e-09 69.3 257 42.4
Gohir.D07G094100 Gossypium hirsutum HOM05D000359 ORTHO05D000251 1.2e-09 69.3 295 38.0
Oeu013517.1 Olea europaea HOM05D000359 ORTHO05D000251 1.5e-09 68.9 340 37.4
vmacro00711 Vaccinium macrocarpon HOM05D000359 ORTHO05D000251 1.5e-09 68.9 227 36.1
Lj1g0024364 Lotus japonicus HOM05D000359 ORTHO05D000251 2.0e-09 68.6 360 32.5
Lj3g0015251 Lotus japonicus HOM05D000359 ORTHO05D000251 2.0e-09 68.6 297 32.0
ATR0743G020 Amborella trichopoda HOM05D000359 ORTHO05D000251 2.6e-09 68.2 298 41.3
ClCG11G000890 Citrullus lanatus HOM05D005536 ORTHO05D006999 2.6e-09 68.2 297 35.7
Potri.007G140200 Populus trichocarpa HOM05D000359 ORTHO05D000251 2.6e-09 68.2 220 34.1
arahy.Tifrunner.gnm1.ann1.6I3V5I Arachis hypogaea HOM05D000359 ORTHO05D000251 3.4e-09 67.8 348 37.9
arahy.Tifrunner.gnm1.ann1.NJEE4A Arachis hypogaea HOM05D000359 ORTHO05D000251 3.4e-09 67.8 349 39.8
Peaxi162Scf00483g00027 Petunia axillaris HOM05D000359 ORTHO05D000251 4.4e-09 67.4 141 41.1
Potri.014G174700 Populus trichocarpa HOM05D000359 ORTHO05D000251 4.4e-09 67.4 238 39.1
Thecc.04G162000 Theobroma cacao HOM05D000359 ORTHO05D000251 5.8e-09 67.0 314 34.4
TWI38G1734 Tripterygium wilfordii HOM05D000359 ORTHO05D000251 5.8e-09 67.0 253 32.4
Ciclev10014120m.g Citrus clementina HOM05D000359 ORTHO05D000251 7.5e-09 66.6 265 36.6
Dinv07633 Davidia involucrata HOM05D000359 ORTHO05D000251 7.5e-09 66.6 323 37.2
Aqoxy2G04167 Aquilegia oxysepala HOM05D000359 ORTHO05D000251 9.8e-09 66.2 226 40.7
BcaB06g26748 Brassica carinata HOM05D000359 ORTHO05D000251 9.8e-09 66.2 439 30.3
SalBow3G0751 Salvia bowleyana HOM05D000359 ORTHO05D000251 9.8e-09 66.2 237 39.2
CiPaw.02G123400 Carya illinoinensis HOM05D000359 ORTHO05D000251 1.7e-08 65.5 247 36.0
Duzib268G0735 Durio zibethinus HOM05D000359 ORTHO05D000251 1.7e-08 65.5 251 35.5
FAN27G1744 Fragaria x ananassa HOM05D000359 ORTHO05D000251 2.2e-08 65.1 129 41.1
Sp3g23010 Schrenkiella parvula HOM05D000359 ORTHO05D000251 2.2e-08 65.1 311 39.9
THA.LOC104802337 Tarenaya hassleriana HOM05D000359 ORTHO05D000251 2.2e-08 65.1 344 36.3
BolC3t17746H Brassica oleracea HOM05D000359 ORTHO05D000251 2.9e-08 64.7 319 39.2
Thhalv10002383m.g Eutrema salsugineum HOM05D000359 ORTHO05D000251 2.9e-08 64.7 310 40.3
BcaC01g03222 Brassica carinata HOM05D000359 ORTHO05D000251 3.7e-08 64.3 318 39.3
C03p54590 Brassica napus HOM05D000359 ORTHO05D000251 3.7e-08 64.3 318 39.3
Cfa010609 Carpinus fangiana HOM05D000359 ORTHO05D000251 3.7e-08 64.3 327 32.1
Potri.017G009900 Populus trichocarpa HOM05D000359 ORTHO05D000251 3.7e-08 64.3 231 38.1
Lj2A1110T52 Lonicera japonica HOM05D000359 ORTHO05D000251 4.9e-08 63.9 138 37.7
Sed0005388 Sechium edule HOM05D000359 ORTHO05D000251 4.9e-08 63.9 283 33.9
TWI15G0173 Tripterygium wilfordii HOM05D000359 ORTHO05D000251 8.3e-08 63.2 252 36.5
THA.LOC104808818 Tarenaya hassleriana HOM05D000359 ORTHO05D000251 1.4e-07 62.4 313 40.6
Atru.chr3.1858 Acer truncatum HOM05D000359 ORTHO05D000251 1.9e-07 62.0 329 32.8
HPP92_007066 Vanilla planifolia HOM05D000359 ORTHO05D000251 3.2e-07 61.2 202 36.1
CsaV3_5G012860 Cucumis sativus L. HOM05D000359 ORTHO05D000251 4.1e-07 60.8 325 33.2
PGSC0003DMG400005365 Solanum tuberosum HOM05D000359 ORTHO05D000251 5.4e-07 60.5 185 33.0
MSTRG.17954 Avicennia marina HOM05D000359 ORTHO05D000251 7.0e-07 60.1 368 29.6
Duzib151G0295 Durio zibethinus HOM05D000359 ORTHO05D000251 7.0e-07 60.1 255 33.3
vmacro02842 Vaccinium macrocarpon HOM05D000359 ORTHO05D000251 7.0e-07 60.1 217 41.5
Rhsim13G0055100 Rhododendron simsii HOM05D000359 ORTHO05D000251 9.2e-07 59.7 237 35.4
MELO3C022610.2 Cucumis melo HOM05D000359 ORTHO05D000251 1.2e-06 59.3 249 34.5
Oeu003679.3 Olea europaea HOM05D000359 ORTHO05D000251 2.0e-06 58.5 285 27.4
SGA_v2.0_scaffold95G28695 Striga asiatica HOM05D000359 ORTHO05D000251 2.0e-06 58.5 455 29.5
CARHR101810 Cardamine hirsuta HOM05D000359 ORTHO05D000251 3.5e-06 57.8 431 34.6
Actinidia33397 Actinidia chinensis HOM05D000359 ORTHO05D000251 4.6e-06 57.4 73 47.9
Migut.N00682 Erythranthe guttata HOM05D000359 ORTHO05D000251 4.6e-06 57.4 131 33.6
Hund22546 Selenicereus undatus HOM05D000359 ORTHO05D000251 4.6e-06 57.4 232 36.6
THA.LOC104803092 Tarenaya hassleriana HOM05D000359 ORTHO05D000251 4.6e-06 57.4 271 31.4
BraA03t13550Z Brassica rapa HOM05D000359 ORTHO05D000251 7.8e-06 56.6 319 38.2


User provided reference genes

Program Settings