Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g050690 Amaranthus hybridus HOM05D007122 ORTHO05D008918 4.0e-142 508.1 252 100.0
AUR62028625 Chenopodium quinoa HOM05D007122 ORTHO05D008918 2.1e-98 362.8 280 68.6
EL10Ac5g10570 Beta vulgaris HOM05D007122 ORTHO05D008918 1.7e-92 343.2 280 66.1
AUR62008050 Chenopodium quinoa HOM05D007122 ORTHO05D008918 9.6e-88 327.4 280 64.6
Hund02816 Selenicereus undatus HOM05D007122 ORTHO05D008918 1.2e-77 293.9 300 55.7
TAR629G1569 Trochodendron aralioides HOM05D007122 ORTHO05D008918 1.1e-72 277.3 252 58.3
PSO782G5442 Papaver somniferum HOM05D007122 ORTHO05D008918 3.3e-72 275.8 277 56.0
BcaC02g12634 Brassica carinata HOM05D007122 ORTHO05D008918 1.1e-70 270.8 249 57.4
CARHR142260 Cardamine hirsuta HOM05D007122 ORTHO05D008918 1.8e-70 270.0 265 55.5
QL05p084392 Quercus lobata HOM05D007122 ORTHO05D008918 1.8e-70 270.0 246 59.8
Thhalv10001577m.g Eutrema salsugineum HOM05D007122 ORTHO05D008918 4.1e-70 268.9 253 56.1
Aa31LG1G28270 Aethionema arabicum HOM05D007122 ORTHO05D008918 6.9e-70 268.1 243 58.4
A05p00930 Brassica napus HOM05D007122 ORTHO05D008918 9.1e-70 267.7 246 58.5
Sp4g28930 Schrenkiella parvula HOM05D007122 ORTHO05D008918 9.1e-70 267.7 253 56.1
CiPaw.01G090900 Carya illinoinensis HOM05D007122 ORTHO05D008918 1.2e-69 267.3 240 59.6
Sopen08g022350 Solanum pennellii HOM05D007122 ORTHO05D008918 1.2e-69 267.3 263 53.2
AT2G46910 Arabidopsis thaliana HOM05D007122 ORTHO05D008918 1.5e-69 266.9 254 55.9
CAN.G21.48 Capsicum annuum HOM05D007122 ORTHO05D008918 2.0e-69 266.5 261 55.2
Potri.002G183700 Populus trichocarpa HOM05D007122 ORTHO05D008918 3.4e-69 265.8 260 55.8
C04p01080 Brassica napus HOM05D006867 ORTHO05D008676 4.5e-69 265.4 250 57.2
Carub.0004s2963 Capsella rubella HOM05D007122 ORTHO05D008918 4.5e-69 265.4 246 56.9
TWI59G0863 Tripterygium wilfordii HOM05D007122 ORTHO05D008918 4.5e-69 265.4 233 59.7
Dinv25395 Davidia involucrata HOM05D007122 ORTHO05D008918 5.9e-69 265.0 249 59.8
Lj3g0016159 Lotus japonicus HOM05D007122 ORTHO05D008918 7.7e-69 264.6 228 61.0
Solyc08g068590.4 Solanum lycopersicum HOM05D007122 ORTHO05D008918 7.7e-69 264.6 263 52.5
THA.LOC104802109 Tarenaya hassleriana HOM05D007122 ORTHO05D008918 7.7e-69 264.6 275 53.1
Nn1g00501 Nelumbo nucifera HOM05D007122 ORTHO05D008918 1.7e-68 263.5 243 57.2
Peaxi162Scf00822g00313 Petunia axillaris HOM05D007122 ORTHO05D008918 1.7e-68 263.5 257 54.9
BraA05t19094Z Brassica rapa HOM05D007122 ORTHO05D008918 2.2e-68 263.1 247 58.3
Hma1.2p1_0074F.1_g038925 Hydrangea macrophylla HOM05D007122 ORTHO05D008918 2.9e-68 262.7 243 59.3
FAN14G1589 Fragaria x ananassa HOM05D007122 ORTHO05D008918 3.8e-68 262.3 248 58.1
MBI12_g33188_MAGBIO Magnolia biondii HOM05D007122 ORTHO05D008918 3.8e-68 262.3 249 57.8
Cc02_g30330 Coffea canephora HOM05D007122 ORTHO05D008918 5.0e-68 261.9 282 52.8
FvH4_6g36990 Fragaria vesca HOM05D007122 ORTHO05D008918 6.5e-68 261.5 248 57.7
RcHm_v2.0_Chr2g0149531 Rosa chinensis HOM05D007122 ORTHO05D008918 6.5e-68 261.5 233 58.4
CANSAT01G1971 Cannabis sativa HOM05D007122 ORTHO05D008918 8.5e-68 261.2 229 61.1
FAN05G3936 Fragaria x ananassa HOM05D007122 ORTHO05D008918 1.4e-67 260.4 248 57.7
arahy.Tifrunner.gnm1.ann1.KLKB5C Arachis hypogaea HOM05D007122 ORTHO05D008918 3.2e-67 259.2 274 51.8
MD17G1162500 Malus domestica HOM05D007122 ORTHO05D008918 7.2e-67 258.1 247 57.9
Oeu050289.1 Olea europaea HOM05D007122 ORTHO05D008918 9.4e-67 257.7 242 56.6
Phvul.010G164100 Phaseolus vulgaris HOM05D007122 ORTHO05D008918 9.4e-67 257.7 246 56.1
Atru.chr5.816 Acer truncatum HOM05D007122 ORTHO05D008918 1.2e-66 257.3 262 54.2
arahy.Tifrunner.gnm1.ann1.XK7RJX Arachis hypogaea HOM05D007122 ORTHO05D008918 2.1e-66 256.5 273 51.3
Cpa.g.sc57.60 Carica papaya HOM05D007122 ORTHO05D008918 4.7e-66 255.4 242 57.0
Prupe.3G022800 Prunus persica HOM05D007122 ORTHO05D008918 4.7e-66 255.4 231 58.9
Ca_20970_v3 Cicer arietinum L. HOM05D007122 ORTHO05D008918 6.1e-66 255.0 245 55.9
CsaV3_3G030490 Cucumis sativus L. HOM05D007122 ORTHO05D008918 1.4e-65 253.8 268 53.7
MSTRG.12208 Avicennia marina HOM05D007122 ORTHO05D008918 1.8e-65 253.4 223 59.2
Ciclev10021604m.g Citrus clementina HOM05D007122 ORTHO05D008918 1.8e-65 253.4 224 59.4
COL.COLO4_23084 Corchorus olitorius HOM05D007122 ORTHO05D008918 3.0e-65 252.7 223 61.4
Nitab4.5_0006202g0020 Nicotiana tabacum HOM05D007122 ORTHO05D008918 3.0e-65 252.7 258 54.3
ClCG07G014660 Citrullus lanatus HOM05D007122 ORTHO05D008918 3.9e-65 252.3 256 54.7
Medtr4g005390 Medicago truncatula HOM05D007122 ORTHO05D008918 3.9e-65 252.3 244 55.7
Os10g0509200 Oryza sativa ssp. japonica HOM05D007122 ORTHO05D008918 5.1e-65 251.9 247 54.7
Gohir.D11G107500 Gossypium hirsutum HOM05D007122 ORTHO05D008918 6.7e-65 251.5 223 60.1
Thecc.01G329100 Theobroma cacao HOM05D007122 ORTHO05D008918 6.7e-65 251.5 223 61.0
Lj9A610T61 Lonicera japonica HOM05D007122 ORTHO05D008918 8.8e-65 251.1 225 61.3
Gorai.007G115100 Gossypium raimondii HOM05D007122 ORTHO05D008918 2.0e-64 250.0 254 54.7
PGSC0003DMG400029047 Solanum tuberosum HOM05D007122 ORTHO05D008918 2.0e-64 250.0 293 47.1
GSVIVG01027487001 Vitis vinifera HOM05D007122 ORTHO05D008918 2.0e-64 250.0 252 56.0
Glyma.07G002100 Glycine max HOM05D007122 ORTHO05D008918 3.3e-64 249.2 233 58.8
TPR.G38811 Trifolium pratense HOM05D007122 ORTHO05D008918 5.7e-64 248.4 231 60.2
Lalb_Chr04g0264851 Lupinus albus HOM05D007122 ORTHO05D008918 1.3e-63 247.3 218 58.7
MELO3C026712.2 Cucumis melo HOM05D007122 ORTHO05D008918 2.2e-63 246.5 264 53.4
ATR0579G047 Amborella trichopoda HOM05D007122 ORTHO05D008918 2.8e-63 246.1 248 54.4
HanXRQChr16g0524441 Helianthus annuus HOM05D007122 ORTHO05D008918 1.1e-62 244.2 247 54.7
Zm00001eb220590 Zea mays HOM05D007122 ORTHO05D008918 3.1e-62 242.7 223 56.5
HPP92_007409 Vanilla planifolia HOM05D007122 ORTHO05D008918 4.1e-62 242.3 258 53.1
CDE02G4652 Ceratophyllum demersum HOM05D007122 ORTHO05D008918 5.0e-60 235.3 239 54.4
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 6.5e-60 235.0 225 56.0
Actinidia33027 Actinidia chinensis HOM05D007122 ORTHO05D008918 8.5e-60 234.6 261 52.5
Eucgr.E00013 Eucalyptus grandis HOM05D007122 ORTHO05D008918 4.2e-59 232.3 236 53.4
unitig_0.g1006 Utricularia gibba HOM05D007122 ORTHO05D003998 7.2e-59 231.5 218 54.1
vmacro08515 Vaccinium macrocarpon HOM05D007122 ORTHO05D008918 4.7e-58 228.8 230 53.9
Sc05g0001590 Simmondsia chinensis HOM05D007122 ORTHO05D008918 1.7e-55 220.3 150 72.7
Rhsim04G0175900 Rhododendron simsii HOM05D007122 ORTHO05D008918 2.2e-55 219.9 288 47.6
Sabra02G0131900 Salix brachista HOM05D007122 ORTHO05D008918 9.1e-54 214.5 340 41.8
Dinv32665 Davidia involucrata HOM05D007122 ORTHO05D008918 2.6e-53 213.0 186 61.8
Sed0017612 Sechium edule HOM05D007122 ORTHO05D008918 2.9e-52 209.5 193 57.0
VMungo0331G0463 Vigna mungo HOM05D000070 ORTHO05D003491 1.1e-51 207.6 141 73.0
Manes.01G237100 Manihot esculenta HOM05D007122 ORTHO05D008918 1.6e-50 203.8 175 62.3
Nitab4.5_0000406g0060 Nicotiana tabacum HOM05D006934 ORTHO05D008743 8.0e-50 201.4 177 57.6
Aqoxy5G04392 Aquilegia oxysepala HOM05D007122 ORTHO05D008918 1.4e-49 200.7 143 72.0
Duzib133G0914 Durio zibethinus HOM05D007122 ORTHO05D008918 1.4e-49 200.7 139 72.7
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 1.2e-48 197.6 163 63.2
Psat7g265240 Pisum sativum HOM05D007122 ORTHO05D008918 1.2e-48 197.6 160 63.1
PGR042G2951 Punica granatum HOM05D007122 ORTHO05D008918 3.4e-48 196.1 137 70.1
Gohir.A11G103000 Gossypium hirsutum HOM05D007122 ORTHO05D008918 5.7e-48 195.3 181 58.0
Migut.N02127 Erythranthe guttata HOM05D007122 ORTHO05D008918 4.8e-47 192.2 147 68.0
Mapoly0069s0014 Marchantia polymorpha HOM05D007122 ORTHO05D008918 4.5e-45 185.7 226 44.7
SMO232G0083 Selaginella moellendorffii HOM05D007122 ORTHO05D008918 3.8e-44 182.6 221 43.9
SGA_v2.0_scaffold104G30244 Striga asiatica HOM05D007122 ORTHO05D008918 1.2e-42 177.6 187 52.9
Pp3c11_15290 Physcomitrium patens HOM05D007122 ORTHO05D008918 1.4e-41 174.1 202 43.6
Glyma.14G134000 Glycine max HOM05D007122 ORTHO05D008918 5.2e-41 172.2 154 58.4
Glyma.08G224600 Glycine max HOM05D007122 ORTHO05D008918 3.1e-38 162.9 116 70.7
Pp3c2_10460 Physcomitrium patens HOM05D007122 ORTHO05D008918 1.3e-36 157.5 135 53.3
PSO063G7482 Papaver somniferum HOM05D007122 ORTHO05D008918 9.5e-35 151.4 143 55.9
Zm00001eb094490 Zea mays HOM05D007122 ORTHO05D008918 8.3e-31 138.3 97 69.1
FAN02G0509 Fragaria x ananassa HOM05D007122 ORTHO05D008918 6.6e-28 128.6 199 40.2
Haze_16258 Corylus avellana HOM05D007122 ORTHO05D008918 1.6e-26 124.0 92 65.2
QL05p083819 Quercus lobata HOM05D007122 ORTHO05D008918 2.2e-23 113.6 81 70.4
SGA_v2.0_scaffold159G37569 Striga asiatica HOM05D007122 ORTHO05D008918 4.6e-13 79.3 111 41.4
Hma1.2p1_0074F.1_g038930 Hydrangea macrophylla HOM05D007122 ORTHO05D008918 1.3e-12 77.8 46 80.4
MCO07G119 Micromonas commoda HOM05D007122 ORTHO05D008918 1.3e-12 77.8 272 27.9
Cre01.g039550 Chlamydomonas reinhardtii HOM05D007122 ORTHO05D008918 3.0e-12 76.6 284 26.8
FAN05G3242 Fragaria x ananassa HOM05D007122 ORTHO05D008918 9.5e-11 71.6 35 91.4
FAN14G0283 Fragaria x ananassa HOM05D007122 ORTHO05D008918 9.5e-11 71.6 35 91.4
FvH4_6g35960 Fragaria vesca HOM05D007122 ORTHO05D008918 4.7e-10 69.3 35 88.6
Psat7g265400 Pisum sativum HOM05D007122 ORTHO05D008918 4.0e-09 66.2 51 64.7
C04p72510 Brassica napus HOM05D000051 ORTHO05D000015 4.1e-06 56.2 75 40.0
BolC4t28739H Brassica oleracea HOM05D000051 ORTHO05D000015 4.1e-06 56.2 75 40.0
Thecc.02G039900 Theobroma cacao HOM05D003483 ORTHO05D004101 4.1e-06 56.2 237 22.8
Medtr2g007640 Medicago truncatula HOM05D003483 ORTHO05D004101 7.1e-06 55.5 187 23.0


User provided reference genes

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