Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g050680 Amaranthus hybridus HOM05D005879 ORTHO05D007432 2.3e-193 678.7 347 100.0
EL10Ac5g10569 Beta vulgaris HOM05D005879 ORTHO05D007432 6.2e-154 547.7 348 78.7
AUR62028624 Chenopodium quinoa HOM05D005879 ORTHO05D007432 6.9e-153 544.3 347 79.5
AUR62008049 Chenopodium quinoa HOM05D005879 ORTHO05D007432 2.5e-150 535.8 348 77.9
Sc05g0001510 Simmondsia chinensis HOM05D005879 ORTHO05D007432 8.2e-130 467.6 334 67.4
TWI77G0137 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 4.0e-108 395.6 354 56.5
Dinv21896 Davidia involucrata HOM05D005879 ORTHO05D007432 1.7e-106 390.2 342 58.5
Lalb_Chr06g0163471 Lupinus albus HOM05D005879 ORTHO05D007432 1.7e-106 390.2 331 58.9
RcHm_v2.0_Chr2g0113151 Rosa chinensis HOM05D005879 ORTHO05D007432 3.7e-106 389.0 340 59.1
Cfa017077 Carpinus fangiana HOM05D005879 ORTHO05D007432 4.8e-106 388.7 339 57.8
Haze_24910 Corylus avellana HOM05D005879 ORTHO05D007432 4.1e-105 385.6 327 59.6
Haze_24914 Corylus avellana HOM05D005879 ORTHO05D007432 4.1e-105 385.6 327 59.6
MD05G1043000 Malus domestica HOM05D005879 ORTHO05D007432 5.4e-105 385.2 354 57.3
Lj4g0026645 Lotus japonicus HOM05D005879 ORTHO05D007432 1.6e-104 383.6 352 58.5
FvH4_1g20700 Fragaria vesca HOM05D005879 ORTHO05D007432 2.0e-104 383.3 351 57.3
Prupe.6G188100 Prunus persica HOM05D005879 ORTHO05D007432 5.9e-104 381.7 356 55.9
FAN26G1261 Fragaria x ananassa HOM05D005879 ORTHO05D007432 1.3e-103 380.6 351 55.6
CARHR246770 Cardamine hirsuta HOM05D005879 ORTHO05D007432 2.9e-103 379.4 342 58.2
QL06p049237 Quercus lobata HOM05D005879 ORTHO05D007432 2.9e-103 379.4 350 56.0
Nn2g14007 Nelumbo nucifera HOM05D005879 ORTHO05D007432 1.1e-102 377.5 344 55.8
Carub.0007s0187 Capsella rubella HOM05D005879 ORTHO05D007432 1.5e-102 377.1 349 57.9
TWI81G0999 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 7.2e-102 374.8 341 56.3
THA.LOC104807688 Tarenaya hassleriana HOM05D005879 ORTHO05D007432 9.5e-102 374.4 341 57.2
TAR381G0927 Trochodendron aralioides HOM05D005879 ORTHO05D007432 2.1e-101 373.2 334 56.6
CiPaw.03G142700 Carya illinoinensis HOM05D005879 ORTHO05D007432 2.8e-101 372.9 327 59.0
ClCG07G017360 Citrullus lanatus HOM05D005879 ORTHO05D007432 3.6e-101 372.5 346 56.4
CsaV3_4G004590 Cucumis sativus L. HOM05D005879 ORTHO05D007432 3.6e-101 372.5 357 54.9
CsaV3_UNG120970 Cucumis sativus L. HOM05D005879 ORTHO05D007432 3.6e-101 372.5 357 54.9
CsaV3_UNG160200 Cucumis sativus L. HOM05D005879 ORTHO05D007432 3.6e-101 372.5 357 54.9
CsaV3_UNG223580 Cucumis sativus L. HOM05D005879 ORTHO05D007432 3.6e-101 372.5 357 54.9
Gohir.A11G202400 Gossypium hirsutum HOM05D005879 ORTHO05D007432 6.1e-101 371.7 326 58.6
Solyc05g052840.1 Solanum lycopersicum HOM05D005879 ORTHO05D007432 1.0e-100 370.9 337 57.9
Sopen05g031350 Solanum pennellii HOM05D005879 ORTHO05D007432 2.3e-100 369.8 357 54.9
PGSC0003DMG400027189 Solanum tuberosum HOM05D005879 ORTHO05D007432 2.3e-100 369.8 356 54.5
AL7G12180 Arabidopsis lyrata HOM05D005879 ORTHO05D007432 4.0e-100 369.0 341 57.5
HanXRQChr17g0554861 Helianthus annuus HOM05D005879 ORTHO05D007432 8.9e-100 367.9 348 54.0
Hma1.2p1_0308F.1_g120270 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 1.2e-99 367.5 352 56.0
arahy.Tifrunner.gnm1.ann1.Y76I0L Arachis hypogaea HOM05D005879 ORTHO05D007432 2.0e-99 366.7 333 56.2
Cpa.g.sc615.1 Carica papaya HOM05D005879 ORTHO05D007432 9.8e-99 364.4 333 55.9
MELO3C017607.2 Cucumis melo HOM05D005879 ORTHO05D007432 1.7e-98 363.6 357 54.3
Gohir.D11G220800 Gossypium hirsutum HOM05D005879 ORTHO05D007432 1.7e-98 363.6 331 56.8
Aqoxy3G00238 Aquilegia oxysepala HOM05D005879 ORTHO05D007432 2.8e-98 362.8 361 53.2
Ciclev10020973m.g Citrus clementina HOM05D005879 ORTHO05D007432 4.9e-98 362.1 319 57.7
Gorai.007G237000 Gossypium raimondii HOM05D005879 ORTHO05D007432 4.9e-98 362.1 331 56.5
arahy.Tifrunner.gnm1.ann1.F9QSZL Arachis hypogaea HOM05D005879 ORTHO05D007432 8.3e-98 361.3 333 55.0
PSO339G2019 Papaver somniferum HOM05D005879 ORTHO05D007432 1.1e-97 360.9 350 52.0
Sed0022481 Sechium edule HOM05D005879 ORTHO05D007432 1.1e-97 360.9 340 55.6
PSO801G0022 Papaver somniferum HOM05D005879 ORTHO05D007432 1.8e-97 360.1 350 53.4
Aa31LG6G15340 Aethionema arabicum HOM05D005879 ORTHO05D007432 4.1e-97 359.0 336 55.1
Nitab4.5_0009581g0010 Nicotiana tabacum HOM05D005879 ORTHO05D007432 4.1e-97 359.0 359 53.2
Potri.005G074700 Populus trichocarpa HOM05D005879 ORTHO05D007432 7.0e-97 358.2 345 53.9
Eucgr.B03900 Eucalyptus grandis HOM05D005879 ORTHO05D007432 3.5e-96 355.9 339 55.5
Atru.chr7.1487 Acer truncatum HOM05D005879 ORTHO05D007432 4.5e-96 355.5 329 55.3
AT4G39920 Arabidopsis thaliana HOM05D005879 ORTHO05D007432 7.8e-96 354.8 335 55.8
Cc07_g15080 Coffea canephora HOM05D005879 ORTHO05D007432 1.0e-95 354.4 343 55.7
TPR.G6200 Trifolium pratense HOM05D005879 ORTHO05D007432 1.0e-95 354.4 377 50.4
Peaxi162Scf00054g00186 Petunia axillaris HOM05D005879 ORTHO05D007432 1.3e-95 354.0 343 56.0
Thhalv10025595m.g Eutrema salsugineum HOM05D005879 ORTHO05D007432 1.7e-95 353.6 353 54.7
Sabra05G0061500 Salix brachista HOM05D005879 ORTHO05D007432 2.3e-95 353.2 332 54.2
Sp7g35960 Schrenkiella parvula HOM05D005879 ORTHO05D007432 2.3e-95 353.2 340 54.7
vmacro12962 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 2.3e-95 353.2 381 51.4
Manes.12G134100 Manihot esculenta HOM05D005879 ORTHO05D007432 2.9e-95 352.8 341 53.1
ECA233G0618 Erigeron canadensis HOM05D005879 ORTHO05D007432 3.9e-95 352.4 352 52.0
Ca_17743_v3 Cicer arietinum L. HOM05D005879 ORTHO05D007432 5.0e-95 352.1 354 52.5
BolC7t46692H Brassica oleracea HOM05D005879 ORTHO05D007432 8.6e-95 351.3 338 53.3
Medtr8g090180 Medicago truncatula HOM05D005879 ORTHO05D007432 8.6e-95 351.3 349 53.6
BraA03t15633Z Brassica rapa HOM05D005879 ORTHO05D007432 1.1e-94 350.9 332 54.2
Glyma.08G134800 Glycine max HOM05D005879 ORTHO05D007432 1.1e-94 350.9 333 54.7
DCAR_003483 Daucus carota HOM05D005879 ORTHO05D007432 1.9e-94 350.1 334 54.5
A03p65800 Brassica napus HOM05D005879 ORTHO05D007432 2.5e-94 349.7 332 53.9
Lsat_1_v5_gn_8_137181 Lactuca sativa HOM05D005879 ORTHO05D007432 4.3e-94 349.0 322 54.3
VMungo0251G0721 Vigna mungo HOM05D005879 ORTHO05D007432 4.3e-94 349.0 325 55.7
COL.COLO4_27255 Corchorus olitorius HOM05D005879 ORTHO05D007432 1.2e-93 347.4 308 57.8
CAN.G151.26 Capsicum annuum HOM05D005879 ORTHO05D007432 6.1e-93 345.1 344 54.1
C07p62780 Brassica napus HOM05D005879 ORTHO05D007432 8.0e-93 344.7 338 53.0
SGA_v2.0_scaffold115G32189 Striga asiatica HOM05D005879 ORTHO05D007432 3.1e-92 342.8 338 54.4
MSTRG.3773 Avicennia marina HOM05D005879 ORTHO05D007432 4.0e-92 342.4 334 55.1
ATR0584G053 Amborella trichopoda HOM05D005879 ORTHO05D007432 8.9e-92 341.3 330 52.4
SGA_v2.0_scaffold334G49051 Striga asiatica HOM05D005879 ORTHO05D007432 1.2e-91 340.9 332 55.1
PSO170G2230 Papaver somniferum HOM05D005879 ORTHO05D007432 2.6e-91 339.7 347 53.3
MBI05_g37046_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 1.1e-89 334.3 367 50.7
Rhsim01G0133800 Rhododendron simsii HOM05D005879 ORTHO05D007432 1.1e-89 334.3 365 51.0
RhsimUnG0233600 Rhododendron simsii HOM05D005879 ORTHO05D007432 1.1e-89 334.3 365 51.0
Glyma.05G177800 Glycine max HOM05D005879 ORTHO05D007432 1.4e-89 334.0 329 54.7
Phvul.002G256800 Phaseolus vulgaris HOM05D005879 ORTHO05D007432 4.1e-89 332.4 325 54.2
unitig_32.g10701 Utricularia gibba HOM05D005879 ORTHO05D007432 4.1e-89 332.4 352 51.1
Oeu032409.1 Olea europaea HOM05D005879 ORTHO05D007432 3.5e-88 329.3 337 53.4
Duzib147G1529 Durio zibethinus HOM05D005879 ORTHO05D007432 6.0e-88 328.6 272 59.6
Migut.L00135 Erythranthe guttata HOM05D005879 ORTHO05D007432 5.0e-87 325.5 333 52.0
SalBow7G4497 Salvia bowleyana HOM05D005879 ORTHO05D007432 6.2e-85 318.5 326 53.1
FAN19G0980 Fragaria x ananassa HOM05D005879 ORTHO05D007432 5.2e-84 315.5 315 53.0
PGR102G2441 Punica granatum HOM05D005879 ORTHO05D007432 1.2e-83 314.3 330 51.2
Thecc.01G100600 Theobroma cacao HOM05D005879 ORTHO05D007432 2.2e-82 310.1 334 49.4
vmacro17311 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 6.4e-82 308.5 328 51.5
CDE04G0616 Ceratophyllum demersum HOM05D005879 ORTHO05D007432 1.4e-81 307.4 339 48.7
Zm00001eb243870 Zea mays HOM05D005879 ORTHO05D007432 2.0e-75 287.0 327 47.7
HPP92_013925 Vanilla planifolia HOM05D005879 ORTHO05D007432 3.7e-74 282.7 357 45.9
Os02g0557000 Oryza sativa ssp. japonica HOM05D005879 ORTHO05D007432 2.8e-69 266.5 321 45.2
Hma1.2p1_0308F.1_g120280 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 4.4e-67 259.2 182 66.5
Pp3c13_2250 Physcomitrium patens HOM05D005879 ORTHO05D007432 1.3e-63 247.7 338 40.8
arahy.Tifrunner.gnm1.ann1.DH96WI Arachis hypogaea HOM05D005879 ORTHO05D007432 1.7e-63 247.3 305 44.6
VMungo0540G1211 Vigna mungo HOM05D005879 ORTHO05D007432 2.3e-63 246.9 204 57.4
AagrBONN_evm.TU.Sc2ySwM_117.1918 Anthoceros agrestis HOM05D005879 ORTHO05D007432 5.6e-62 242.3 329 40.7
Mapoly0002s0046 Marchantia polymorpha HOM05D005879 ORTHO05D007432 9.6e-62 241.5 341 41.6
Atru.chr11.1549 Acer truncatum HOM05D005879 ORTHO05D007432 1.3e-61 241.1 163 65.6
SMO143G0283 Selaginella moellendorffii HOM05D005879 ORTHO05D007432 1.9e-57 227.3 314 38.2
FAN23G0004 Fragaria x ananassa HOM05D005879 ORTHO05D007432 1.9e-54 217.2 132 74.2
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 1.6e-53 214.2 363 38.3
Atru.chr7.1491 Acer truncatum HOM05D005879 ORTHO05D007432 2.4e-52 210.3 237 47.7
SEGI_25682 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 3.1e-52 209.9 195 51.8
Psat7g055120 Pisum sativum HOM05D005879 ORTHO05D007432 1.2e-51 208.0 334 40.4
Potri.007G093800 Populus trichocarpa HOM05D005879 ORTHO05D007432 1.6e-48 197.6 339 38.3
C03p78540 Brassica napus HOM05D005879 ORTHO05D007432 1.8e-47 194.1 314 39.5
MD01G1031400 Malus domestica HOM05D005879 ORTHO05D007432 4.3e-46 189.5 131 66.4
BolC3t20106H Brassica oleracea HOM05D005879 ORTHO05D007432 3.5e-40 169.9 314 35.4
MCO11G662 Micromonas commoda HOM05D005879 ORTHO05D007432 6.7e-39 165.6 375 32.8
BcaB03g12293 Brassica carinata HOM05D005879 ORTHO05D007432 1.1e-36 158.3 208 43.8
Actinidia28237 Actinidia chinensis HOM05D005879 ORTHO05D007432 1.4e-36 157.9 321 34.9
PRCOL_00003435 Prasinoderma coloniale HOM05D005879 ORTHO05D007432 5.3e-36 156.0 306 32.0
HPP92_014012 Vanilla planifolia HOM05D005879 ORTHO05D007432 1.0e-31 141.7 242 38.4
Cre03.g200150 Chlamydomonas reinhardtii HOM05D005879 ORTHO05D007432 3.1e-28 130.2 150 44.7
Migut.L00117 Erythranthe guttata HOM05D005879 ORTHO05D007432 1.0e-26 125.2 86 67.4
GSVIVG01004856001 Vitis vinifera HOM05D005879 ORTHO05D007432 2.2e-26 124.0 134 48.5
BcaNung02300 Brassica carinata HOM05D005879 ORTHO05D007432 2.7e-24 117.1 167 41.9
BraA08t34278Z Brassica rapa HOM05D005879 ORTHO05D007432 4.8e-21 106.3 87 62.1
MBI15_g14577_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 1.2e-19 101.7 69 62.3
SEGI_41531 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 7.7e-19 99.0 145 43.4
Hma1.2p1_0297F.1_g117050 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 3.8e-18 96.7 90 57.8
A08p23210 Brassica napus HOM05D005879 ORTHO05D007432 1.6e-16 91.3 70 62.9
PRCOL_00004923 Prasinoderma coloniale HOM05D005879 ORTHO05D034414 1.7e-13 81.3 132 28.8
Cfa025806 Carpinus fangiana HOM05D005879 ORTHO05D123935 6.5e-10 69.3 151 28.5
BcaC01g00330 Brassica carinata HOM05D005879 ORTHO05D007432 8.5e-10 68.9 155 35.5
Pp3c4_21480 Physcomitrium patens HOM05D005879 ORTHO05D007432 7.2e-09 65.9 62 53.2
Medtr1g108500 Medicago truncatula HOM05D011368 ORTHO05D000135 1.0e-07 62.0 99 34.3


User provided reference genes

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