Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g050230 Amaranthus hybridus HOM05D000179 ORTHO05D000107 2.7e-215 751.9 428 100.0
Ah.02g111300 Amaranthus hybridus HOM05D000179 ORTHO05D000064 2.1e-71 273.9 526 46.6
AUR62011972 Chenopodium quinoa HOM05D000179 ORTHO05D000107 6.3e-63 245.7 344 52.9
EL10Ac5g10493 Beta vulgaris HOM05D000179 ORTHO05D000107 7.4e-56 222.2 550 42.9
Peaxi162Scf00259g00513 Petunia axillaris HOM05D000179 ORTHO05D000107 5.9e-21 106.3 359 34.0
Hund09546 Selenicereus undatus HOM05D000179 ORTHO05D000107 1.7e-20 104.8 473 34.0
TWI12G1078 Tripterygium wilfordii HOM05D000179 ORTHO05D000107 1.5e-19 101.7 334 33.2
Dinv32885 Davidia involucrata HOM05D000179 ORTHO05D000107 1.9e-19 101.3 331 38.1
Manes.05G081800 Manihot esculenta HOM05D000179 ORTHO05D000107 7.2e-19 99.4 346 34.7
Prupe.8G234800 Prunus persica HOM05D000179 ORTHO05D000107 4.7e-18 96.7 340 33.5
Eucgr.B01471 Eucalyptus grandis HOM05D000179 ORTHO05D000107 1.4e-17 95.1 326 34.0
Manes.01G204100 Manihot esculenta HOM05D000179 ORTHO05D000107 2.3e-17 94.4 344 31.7
TPR.G34885 Trifolium pratense HOM05D000179 ORTHO05D000107 2.3e-17 94.4 343 32.1
TAR365G0388 Trochodendron aralioides HOM05D000179 ORTHO05D000107 4.0e-17 93.6 347 34.3
Dinv22503 Davidia involucrata HOM05D000179 ORTHO05D000107 5.2e-17 93.2 311 34.4
TAR636G0240 Trochodendron aralioides HOM05D000179 ORTHO05D000107 6.8e-17 92.8 308 35.7
Nn1g02458 Nelumbo nucifera HOM05D000179 ORTHO05D000107 1.2e-16 92.0 318 34.3
Potri.005G215100 Populus trichocarpa HOM05D000179 ORTHO05D000107 1.2e-16 92.0 361 32.4
Actinidia24923 Actinidia chinensis HOM05D000179 ORTHO05D000107 1.5e-16 91.7 339 32.2
Duzib211G0150 Durio zibethinus HOM05D000179 ORTHO05D000107 1.5e-16 91.7 350 33.4
Sabra02G0039200 Salix brachista HOM05D000179 ORTHO05D000107 2.0e-16 91.3 553 30.4
Sabra05G0164400 Salix brachista HOM05D000179 ORTHO05D000107 3.4e-16 90.5 354 31.9
Ciclev10019959m.g Citrus clementina HOM05D000179 ORTHO05D000107 4.4e-16 90.1 349 33.0
Cfa006201 Carpinus fangiana HOM05D000179 ORTHO05D000107 1.3e-15 88.6 328 33.5
Gohir.D11G130800 Gossypium hirsutum HOM05D000179 ORTHO05D000107 1.3e-15 88.6 337 31.5
Gorai.007G139800 Gossypium raimondii HOM05D000179 ORTHO05D000107 1.7e-15 88.2 336 31.2
Hma1.2p1_0172F.1_g076010 Hydrangea macrophylla HOM05D000179 ORTHO05D000107 2.2e-15 87.8 294 33.3
Gohir.A11G125500 Gossypium hirsutum HOM05D000179 ORTHO05D000107 2.9e-15 87.4 345 31.6
Potri.002G048000 Populus trichocarpa HOM05D000179 ORTHO05D000107 2.9e-15 87.4 545 30.1
Phvul.007G174900 Phaseolus vulgaris HOM05D000179 ORTHO05D000107 6.3e-15 86.3 338 30.8
CiPaw.08G109700 Carya illinoinensis HOM05D000179 ORTHO05D000107 1.8e-14 84.7 355 30.4
DCAR_002702 Daucus carota HOM05D000179 ORTHO05D000107 1.8e-14 84.7 306 31.0
MD03G1258200 Malus domestica HOM05D000179 ORTHO05D000107 1.8e-14 84.7 348 33.6
CSS0000745 Camellia sinensis var. sinensis HOM05D000179 ORTHO05D000107 2.4e-14 84.3 331 30.2
Actinidia21142 Actinidia chinensis HOM05D000179 ORTHO05D000107 4.1e-14 83.6 162 44.4
Duzib133G0638 Durio zibethinus HOM05D000179 ORTHO05D000107 4.1e-14 83.6 341 32.8
Rhsim01G0272100 Rhododendron simsii HOM05D000179 ORTHO05D000064 4.1e-14 83.6 341 29.6
Duzib138G1256 Durio zibethinus HOM05D000179 ORTHO05D000107 5.4e-14 83.2 294 31.3
Gohir.A12G002800 Gossypium hirsutum HOM05D000179 ORTHO05D000107 7.0e-14 82.8 338 31.7
Sc05g0001290 Simmondsia chinensis HOM05D000179 ORTHO05D000107 7.0e-14 82.8 537 29.6
TWI18G1044 Tripterygium wilfordii HOM05D000179 ORTHO05D000107 7.0e-14 82.8 292 32.9
Cpa.g.sc52.117 Carica papaya HOM05D000179 ORTHO05D000107 9.2e-14 82.4 331 30.5
Gohir.D12G002500 Gossypium hirsutum HOM05D000179 ORTHO05D000107 9.2e-14 82.4 524 28.4
Gorai.008G002200 Gossypium raimondii HOM05D000179 ORTHO05D000107 1.2e-13 82.0 334 31.4
CiPaw.07G086900 Carya illinoinensis HOM05D000179 ORTHO05D000107 2.7e-13 80.9 317 31.5
Lalb_Chr06g0162791 Lupinus albus HOM05D000179 ORTHO05D000107 7.8e-13 79.3 348 29.9
Lalb_Chr21g0306341 Lupinus albus HOM05D000179 ORTHO05D000107 1.0e-12 79.0 540 28.5
PSO339G5190 Papaver somniferum HOM05D000179 ORTHO05D000107 1.0e-12 79.0 346 31.8
vmacro14888 Vaccinium macrocarpon HOM05D000179 ORTHO05D000107 1.0e-12 79.0 367 29.7
VMungo0720G1299 Vigna mungo HOM05D000179 ORTHO05D000107 1.3e-12 78.6 343 31.8
Nitab4.5_0000459g0080 Nicotiana tabacum HOM05D000179 ORTHO05D000107 2.3e-12 77.8 363 28.4
Psat6g058520 Pisum sativum HOM05D000179 ORTHO05D000107 3.9e-12 77.0 331 29.3
Nitab4.5_0004115g0010 Nicotiana tabacum HOM05D000179 ORTHO05D000107 5.0e-12 76.6 358 30.2
HanXRQChr01g0005621 Helianthus annuus HOM05D000179 ORTHO05D000107 6.6e-12 76.3 318 31.8
Lj5g0021439 Lotus japonicus HOM05D000179 ORTHO05D000107 1.1e-11 75.5 340 31.2
RcHm_v2.0_Chr6g0289921 Rosa chinensis HOM05D000179 ORTHO05D000107 1.1e-11 75.5 348 30.2
GSVIVG01003119001 Vitis vinifera HOM05D000179 ORTHO05D000107 1.1e-11 75.5 289 31.5
Glyma.19G159600 Glycine max HOM05D000179 ORTHO05D000107 1.5e-11 75.1 321 30.2
MD11G1278800 Malus domestica HOM05D000179 ORTHO05D000107 1.9e-11 74.7 182 42.9
FvH4_2g22950 Fragaria vesca HOM05D000179 ORTHO05D000107 2.5e-11 74.3 352 31.2
VMungo1383G2029 Vigna mungo HOM05D000179 ORTHO05D000107 2.5e-11 74.3 346 29.2
Thecc.01G271700 Theobroma cacao HOM05D000179 ORTHO05D000107 3.3e-11 73.9 165 43.0
FAN24G3243 Fragaria x ananassa HOM05D000179 ORTHO05D000107 4.3e-11 73.6 352 31.2
Aqoxy2G03463 Aquilegia oxysepala HOM05D000179 ORTHO05D000107 5.6e-11 73.2 295 30.8
Glyma.03G157432 Glycine max HOM05D000179 ORTHO05D000107 7.3e-11 72.8 334 29.9
Sed0017240 Sechium edule HOM05D000179 ORTHO05D000107 1.2e-10 72.0 329 30.1
CANSAT25G0389 Cannabis sativa HOM05D000179 ORTHO05D000107 1.6e-10 71.6 302 32.8
COL.COLO4_09188 Corchorus olitorius HOM05D000179 ORTHO05D000107 1.6e-10 71.6 343 31.2
PSO384G3854 Papaver somniferum HOM05D000179 ORTHO05D000107 1.6e-10 71.6 346 30.6
Lj2A1165G50 Lonicera japonica HOM05D000179 ORTHO05D000107 2.8e-10 70.9 261 31.8
FAN20G1262 Fragaria x ananassa HOM05D000179 ORTHO05D000107 4.7e-10 70.1 352 30.7
Phvul.001G154800 Phaseolus vulgaris HOM05D000179 ORTHO05D000107 6.2e-10 69.7 341 28.7
arahy.Tifrunner.gnm1.ann1.KA762Q Arachis hypogaea HOM05D000179 ORTHO05D000107 8.0e-10 69.3 370 30.0
FAN27G2274 Fragaria x ananassa HOM05D000179 ORTHO05D000107 8.0e-10 69.3 202 35.1
Oeu025765.1 Olea europaea HOM05D000179 ORTHO05D000107 1.0e-09 68.9 312 29.5
vmacro00137 Vaccinium macrocarpon HOM05D000179 ORTHO05D000107 1.0e-09 68.9 329 29.2
CAN.G433.5 Capsicum annuum HOM05D000179 ORTHO05D000107 1.4e-09 68.6 361 28.3
Glyma.07G009100 Glycine max HOM05D000179 ORTHO05D000107 1.4e-09 68.6 174 37.4
Lsat_1_v5_gn_5_185501 Lactuca sativa HOM05D000179 ORTHO05D000107 1.8e-09 68.2 343 27.7
Migut.D00357 Erythranthe guttata HOM05D000179 ORTHO05D000107 3.1e-09 67.4 283 30.4
Glyma.10G029700 Glycine max HOM05D000179 ORTHO05D000107 3.1e-09 67.4 351 29.9
QL12p042256 Quercus lobata HOM05D000179 ORTHO05D000107 3.1e-09 67.4 294 30.6
PGSC0003DMG400019342 Solanum tuberosum HOM05D000179 ORTHO05D000107 5.2e-09 66.6 210 32.9
ATR0789G058 Amborella trichopoda HOM05D000179 ORTHO05D000107 6.8e-09 66.2 261 30.3
Actinidia19961 Actinidia chinensis HOM05D000179 ORTHO05D000107 8.9e-09 65.9 348 30.2
FAN15G1122 Fragaria x ananassa HOM05D000179 ORTHO05D000107 8.9e-09 65.9 202 34.7
Gohir.A08G064000 Gossypium hirsutum HOM05D000179 ORTHO05D000107 8.9e-09 65.9 303 28.1
Nn6g34168 Nelumbo nucifera HOM05D000179 ORTHO05D000107 8.9e-09 65.9 296 30.1
C03p92260 Brassica napus HOM05D000179 ORTHO05D000107 1.2e-08 65.5 153 36.6
arahy.Tifrunner.gnm1.ann1.9KUV83 Arachis hypogaea HOM05D000179 ORTHO05D000107 1.5e-08 65.1 370 30.0
BolC3t21540H Brassica oleracea HOM05D000179 ORTHO05D000107 1.5e-08 65.1 153 37.9
TPR.G19279 Trifolium pratense HOM05D000179 ORTHO05D000107 2.0e-08 64.7 213 33.8
ClCG09G007400 Citrullus lanatus HOM05D000179 ORTHO05D000107 2.6e-08 64.3 337 31.2
BcaC01g01465 Brassica carinata HOM05D000179 ORTHO05D000107 3.4e-08 63.9 153 35.9
Cc01_g19010 Coffea canephora HOM05D000179 ORTHO05D000107 3.4e-08 63.9 361 29.6
BraA08t32150Z Brassica rapa HOM05D000179 ORTHO05D000107 5.8e-08 63.2 153 38.6
Lj1A55G20 Lonicera japonica HOM05D000179 ORTHO05D000107 5.8e-08 63.2 334 27.8
BcaB05g23653 Brassica carinata HOM05D000179 ORTHO05D000107 9.8e-08 62.4 299 27.8
A08p00950 Brassica napus HOM05D000179 ORTHO05D000107 1.3e-07 62.0 153 37.9
C02p39200 Brassica napus HOM05D000179 ORTHO05D000107 1.3e-07 62.0 298 27.2
BolC2t09932H Brassica oleracea HOM05D000179 ORTHO05D000107 1.3e-07 62.0 298 27.2
ClCG07G013780 Citrullus lanatus HOM05D000179 ORTHO05D000107 1.3e-07 62.0 178 37.1
Sopen09g027420 Solanum pennellii HOM05D000179 ORTHO05D000107 1.3e-07 62.0 206 31.6
BcaC01g01462 Brassica carinata HOM05D000179 ORTHO05D024114 1.7e-07 61.6 147 36.7
ECA248G0822 Erigeron canadensis HOM05D000179 ORTHO05D000107 1.7e-07 61.6 179 34.6
Oeu014739.1 Olea europaea HOM05D000179 ORTHO05D000107 1.7e-07 61.6 284 28.9
MSTRG.17462 Avicennia marina HOM05D000179 ORTHO05D000107 2.2e-07 61.2 165 37.6
A02p24910 Brassica napus HOM05D000179 ORTHO05D000107 2.2e-07 61.2 298 27.9
BraA02t07481Z Brassica rapa HOM05D000179 ORTHO05D000107 2.2e-07 61.2 298 27.9
CARHR044700 Cardamine hirsuta HOM05D000179 ORTHO05D000107 2.2e-07 61.2 160 40.0
SGA_v2.0_scaffold20G09217 Striga asiatica HOM05D000179 ORTHO05D000107 2.9e-07 60.8 189 33.3
Glyma.02G144400 Glycine max HOM05D000179 ORTHO05D000107 3.7e-07 60.5 342 27.5
TAR633G1320 Trochodendron aralioides HOM05D000179 ORTHO05D000107 3.7e-07 60.5 323 29.4
Actinidia32152 Actinidia chinensis HOM05D000179 ORTHO05D000107 4.9e-07 60.1 156 38.5
CsaV3_1G012940 Cucumis sativus L. HOM05D000179 ORTHO05D000107 4.9e-07 60.1 180 36.7
BcaC03g16159 Brassica carinata HOM05D000179 ORTHO05D000107 6.4e-07 59.7 298 26.8
Glyma.08G192300 Glycine max HOM05D000179 ORTHO05D000107 6.4e-07 59.7 199 32.2
MBI01_g20334_MAGBIO Magnolia biondii HOM05D000179 ORTHO05D000107 6.4e-07 59.7 233 33.5
PGR044G2027 Punica granatum HOM05D000179 ORTHO05D000107 6.4e-07 59.7 191 34.0
Solyc09g065670.3 Solanum lycopersicum HOM05D000179 ORTHO05D000107 6.4e-07 59.7 208 30.8
AT4G02670 Arabidopsis thaliana HOM05D000179 ORTHO05D000107 8.3e-07 59.3 287 27.9
Nitab4.5_0014751g0010 Nicotiana tabacum HOM05D000179 ORTHO05D000107 8.3e-07 59.3 199 34.2
Sed0013448 Sechium edule HOM05D000179 ORTHO05D000107 8.3e-07 59.3 205 33.2
Actinidia21767 Actinidia chinensis HOM05D000179 ORTHO05D000107 1.1e-06 58.9 157 38.2
Sabra06G0176100 Salix brachista HOM05D000179 ORTHO05D000107 1.1e-06 58.9 213 31.5
Ciclev10001017m.g Citrus clementina HOM05D000179 ORTHO05D000107 1.9e-06 58.2 180 35.0
Gohir.D08G072500 Gossypium hirsutum HOM05D000179 ORTHO05D000107 1.9e-06 58.2 303 26.7
Gorai.004G076800 Gossypium raimondii HOM05D000179 ORTHO05D000107 1.9e-06 58.2 302 26.5
Sed0000186 Sechium edule HOM05D000179 ORTHO05D000107 1.9e-06 58.2 335 28.4
MELO3C005046.2 Cucumis melo HOM05D000179 ORTHO05D000107 2.4e-06 57.8 178 36.5
Gohir.A06G011000 Gossypium hirsutum HOM05D000179 ORTHO05D000107 2.4e-06 57.8 188 32.4
COL.COLO4_21072 Corchorus olitorius HOM05D001513 ORTHO05D001494 3.2e-06 57.4 195 32.3
Nn6g35502 Nelumbo nucifera HOM05D000179 ORTHO05D000107 3.2e-06 57.4 288 30.6
AL1G63110 Arabidopsis lyrata HOM05D000179 ORTHO05D000107 4.1e-06 57.0 158 37.3
CiPaw.08G163100 Carya illinoinensis HOM05D000179 ORTHO05D000107 4.1e-06 57.0 150 33.3
Dinv22886 Davidia involucrata HOM05D000179 ORTHO05D000107 4.1e-06 57.0 288 29.2
Lj1g0012149 Lotus japonicus HOM05D000179 ORTHO05D000107 4.1e-06 57.0 260 30.0
Duzib192G0314 Durio zibethinus HOM05D000179 ORTHO05D000107 5.4e-06 56.6 181 36.5
TPR.G13180 Trifolium pratense HOM05D000179 ORTHO05D000107 5.4e-06 56.6 152 35.5
CSS0013504 Camellia sinensis var. sinensis HOM05D000179 ORTHO05D000107 7.0e-06 56.2 196 33.7
Phvul.001G036500 Phaseolus vulgaris HOM05D000179 ORTHO05D000107 7.0e-06 56.2 162 38.3
Rhsim08G0234300 Rhododendron simsii HOM05D000179 ORTHO05D000107 7.0e-06 56.2 229 33.2
THA.LOC104810341 Tarenaya hassleriana HOM05D000179 ORTHO05D000107 7.0e-06 56.2 155 34.8
Migut.N00500 Erythranthe guttata HOM05D000179 ORTHO05D000107 9.2e-06 55.8 185 33.5


User provided reference genes

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