Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g050110 Amaranthus hybridus HOM05D003827 ORTHO05D004518 8.2e-27 122.9 57 100.0
AUR62011961 Chenopodium quinoa HOM05D003827 ORTHO05D004518 3.5e-22 107.5 52 92.3
AUR62032274 Chenopodium quinoa HOM05D003827 ORTHO05D004518 3.5e-22 107.5 52 92.3
EL10Ac5g10483 Beta vulgaris HOM05D003827 ORTHO05D004518 1.3e-21 105.5 53 88.7
Ah.02g111340 Amaranthus hybridus HOM05D003827 ORTHO05D004518 2.5e-20 101.3 51 92.2
Rhsim13G0030000 Rhododendron simsii HOM05D003827 ORTHO05D004518 1.3e-11 72.4 50 76.0
vmacro02620 Vaccinium macrocarpon HOM05D003827 ORTHO05D004518 1.7e-11 72.0 50 76.0
CSS0001059 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 2.2e-11 71.6 49 75.5
Rhsim01G0271400 Rhododendron simsii HOM05D003827 ORTHO05D004518 2.2e-11 71.6 50 72.0
Migut.D00347 Erythranthe guttata HOM05D003827 ORTHO05D004518 4.8e-11 70.5 54 68.5
GSVIVG01003137001 Vitis vinifera HOM05D003827 ORTHO05D004518 8.2e-11 69.7 49 73.5
Sc05g0001120 Simmondsia chinensis HOM05D003827 ORTHO05D004518 1.1e-10 69.3 56 66.1
TAR362G1025 Trochodendron aralioides HOM05D003827 ORTHO05D004518 1.1e-10 69.3 49 73.5
PGR119G2143 Punica granatum HOM05D003827 ORTHO05D004518 1.4e-10 68.9 48 68.8
Psat6g058320 Pisum sativum HOM05D003827 ORTHO05D004518 1.8e-10 68.6 54 63.0
Ciclev10018911m.g Citrus clementina HOM05D003827 ORTHO05D004518 3.1e-10 67.8 52 67.3
Nn1g02509 Nelumbo nucifera HOM05D003827 ORTHO05D004518 4.1e-10 67.4 49 75.5
MD11G1277100 Malus domestica HOM05D003827 ORTHO05D004518 5.3e-10 67.0 49 69.4
ClCG07G000540 Citrullus lanatus HOM05D003827 ORTHO05D004518 1.2e-09 65.9 49 69.4
MELO3C014319.2 Cucumis melo HOM05D003827 ORTHO05D004518 1.2e-09 65.9 49 69.4
CsaV3_2G013800 Cucumis sativus L. HOM05D003827 ORTHO05D004518 1.2e-09 65.9 49 69.4
Nn3g19462 Nelumbo nucifera HOM05D003827 ORTHO05D004518 1.2e-09 65.9 49 71.4
Sed0018560 Sechium edule HOM05D003827 ORTHO05D004518 1.5e-09 65.5 54 63.0
Actinidia24929 Actinidia chinensis HOM05D003827 ORTHO05D004518 3.4e-09 64.3 49 67.3
Eucgr.B01477 Eucalyptus grandis HOM05D003827 ORTHO05D004518 3.4e-09 64.3 48 66.7
Glyma.02G143400 Glycine max HOM05D003827 ORTHO05D004518 4.5e-09 63.9 49 65.3
Gohir.A11G126200 Gossypium hirsutum HOM05D003827 ORTHO05D004518 4.5e-09 63.9 48 68.8
Gohir.D11G131801 Gossypium hirsutum HOM05D003827 ORTHO05D004518 4.5e-09 63.9 48 68.8
Gorai.007G140900 Gossypium raimondii HOM05D003827 ORTHO05D004518 4.5e-09 63.9 48 68.8
SalBow6G3195 Salvia bowleyana HOM05D003827 ORTHO05D004518 4.5e-09 63.9 53 58.5
MSTRG.17468 Avicennia marina HOM05D003827 ORTHO05D004518 5.9e-09 63.5 49 67.3
COL.COLO4_06099 Corchorus olitorius HOM05D003827 ORTHO05D004518 5.9e-09 63.5 49 67.3
Duzib138G1561 Durio zibethinus HOM05D003827 ORTHO05D004518 1.0e-08 62.8 53 60.4
Atru.chr5.1540 Acer truncatum HOM05D003827 ORTHO05D004518 1.3e-08 62.4 49 65.3
CSS0010046 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 1.3e-08 62.4 47 70.2
Lj1A56T63 Lonicera japonica HOM05D003827 ORTHO05D004518 1.3e-08 62.4 47 68.1
Phvul.007G175800 Phaseolus vulgaris HOM05D003827 ORTHO05D004518 1.3e-08 62.4 52 57.7
Ca_09721_v3 Cicer arietinum L. HOM05D003827 ORTHO05D004518 1.7e-08 62.0 45 64.4
Lsat_1_v5_gn_5_184780 Lactuca sativa HOM05D003827 ORTHO05D004518 2.2e-08 61.6 49 65.3
Prupe.8G233400 Prunus persica HOM05D003827 ORTHO05D004518 2.2e-08 61.6 48 68.8
Cpa.g.c31397 Carica papaya HOM05D003827 ORTHO05D004518 2.9e-08 61.2 49 65.3
CDE07G1346 Ceratophyllum demersum HOM05D003827 ORTHO05D004518 2.9e-08 61.2 41 68.3
Migut.N02178 Erythranthe guttata HOM05D003827 ORTHO05D004518 2.9e-08 61.2 50 62.0
Aqoxy5G00378 Aquilegia oxysepala HOM05D003827 ORTHO05D004518 3.8e-08 60.8 47 63.8
Oeu002272.1 Olea europaea HOM05D003827 ORTHO05D004518 3.8e-08 60.8 45 64.4
Medtr1g071070 Medicago truncatula HOM05D003827 ORTHO05D004518 5.0e-08 60.5 44 65.9
Cc00_g27210 Coffea canephora HOM05D003827 ORTHO05D004518 6.5e-08 60.1 44 65.9
Manes.05G082700 Manihot esculenta HOM05D003827 ORTHO05D004518 6.5e-08 60.1 44 61.4
Glyma.10G031000 Glycine max HOM05D003827 ORTHO05D004518 8.5e-08 59.7 51 54.9
HanXRQChr01g0006931 Helianthus annuus HOM05D003827 ORTHO05D004518 8.5e-08 59.7 47 66.0
ATR0665G375 Amborella trichopoda HOM05D003827 ORTHO05D004518 1.4e-07 58.9 38 65.8
CANSAT25G1147 Cannabis sativa HOM05D003827 ORTHO05D004518 1.4e-07 58.9 52 59.6
MBI04_g36520_MAGBIO Magnolia biondii HOM05D003827 ORTHO05D004518 1.4e-07 58.9 42 71.4
BcaC07g40810 Brassica carinata HOM05D003827 ORTHO05D004518 1.9e-07 58.5 42 66.7
C08p38040 Brassica napus HOM05D003827 ORTHO05D004518 1.9e-07 58.5 42 66.7
Lj5g0023922 Lotus japonicus HOM05D003827 ORTHO05D004518 1.9e-07 58.5 53 58.5
arahy.Tifrunner.gnm1.ann1.S69P4W Arachis hypogaea HOM05D003827 ORTHO05D004518 2.5e-07 58.2 49 57.1
arahy.Tifrunner.gnm1.ann1.X14VTN Arachis hypogaea HOM05D003827 ORTHO05D004518 2.5e-07 58.2 49 57.1
BolC8t51378H Brassica oleracea HOM05D003827 ORTHO05D004518 2.5e-07 58.2 36 72.2
Gohir.A07G207900 Gossypium hirsutum HOM05D003827 ORTHO05D004518 3.2e-07 57.8 49 61.2
Gorai.004G075700 Gossypium raimondii HOM05D003827 ORTHO05D004518 3.2e-07 57.8 47 55.3
arahy.Tifrunner.gnm1.ann1.735JS3 Arachis hypogaea HOM05D003827 ORTHO05D004518 4.2e-07 57.4 49 53.1
arahy.Tifrunner.gnm1.ann1.900HG3 Arachis hypogaea HOM05D003827 ORTHO05D004518 4.2e-07 57.4 49 53.1
A09p55100 Brassica napus HOM05D003827 ORTHO05D004518 4.2e-07 57.4 36 72.2
BraA09t40917Z Brassica rapa HOM05D003827 ORTHO05D004518 4.2e-07 57.4 36 72.2
CiPaw.07G086100 Carya illinoinensis HOM05D003827 ORTHO05D004518 5.5e-07 57.0 53 56.6
TAR633G1445 Trochodendron aralioides HOM05D003827 ORTHO05D004518 5.5e-07 57.0 43 67.4
Cfa006213 Carpinus fangiana HOM05D003827 ORTHO05D004518 1.2e-06 55.8 49 61.2
RcHm_v2.0_Chr6g0289731 Rosa chinensis HOM05D003827 ORTHO05D004518 1.2e-06 55.8 48 62.5
CARHR291540 Cardamine hirsuta HOM05D003827 ORTHO05D004518 1.6e-06 55.5 30 73.3
Duzib211G0278 Durio zibethinus HOM05D003827 ORTHO05D004518 1.6e-06 55.5 44 63.6
Potri.002G046700 Populus trichocarpa HOM05D003827 ORTHO05D004518 2.7e-06 54.7 43 58.1
MSTRG.21519 Avicennia marina HOM05D003827 ORTHO05D004518 3.6e-06 54.3 48 58.3
Manes.01G203100 Manihot esculenta HOM05D003827 ORTHO05D004518 3.6e-06 54.3 41 63.4
PSO210G6408 Papaver somniferum HOM05D003827 ORTHO05D004518 3.6e-06 54.3 40 65.0
PSO832G0360 Papaver somniferum HOM05D003827 ORTHO05D004518 3.6e-06 54.3 40 65.0
Sabra02G0037600 Salix brachista HOM05D003827 ORTHO05D004518 3.6e-06 54.3 43 55.8
Sabra05G0165800 Salix brachista HOM05D003827 ORTHO05D004518 3.6e-06 54.3 43 58.1
Haze_04629 Corylus avellana HOM05D003827 ORTHO05D004518 4.7e-06 53.9 49 59.2
MD03G1256300 Malus domestica HOM05D003827 ORTHO05D004518 4.7e-06 53.9 41 61.0
Sp5g00120 Schrenkiella parvula HOM05D003827 ORTHO05D004518 4.7e-06 53.9 30 73.3
MSTRG.12545 Avicennia marina HOM05D003827 ORTHO05D004518 6.1e-06 53.5 44 63.6
FAN15G1200 Fragaria x ananassa HOM05D003827 ORTHO05D004518 6.1e-06 53.5 48 58.3
FAN20G2722 Fragaria x ananassa HOM05D003827 ORTHO05D004518 6.1e-06 53.5 48 58.3
SEGI_41162 Sequoiadendron giganteum HOM05D001693 ORTHO05D001588 6.1e-06 53.5 40 67.5
Duzib133G0640 Durio zibethinus HOM05D003827 ORTHO05D004518 7.9e-06 53.1 49 59.2
Thecc.01G269500 Theobroma cacao HOM05D003827 ORTHO05D004518 7.9e-06 53.1 42 64.3


User provided reference genes

Program Settings