Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g050020 Amaranthus hybridus HOM05D005370 ORTHO05D006659 1.2e-130 469.9 252 100.0
AUR62032263 Chenopodium quinoa HOM05D005370 ORTHO05D006659 1.9e-99 366.3 252 77.8
AUR62011949 Chenopodium quinoa HOM05D005370 ORTHO05D006659 5.1e-97 358.2 252 76.2
EL10Ac5g10469 Beta vulgaris HOM05D005370 ORTHO05D006659 6.9e-94 347.8 252 74.6
GSVIVG01018102001 Vitis vinifera HOM05D005370 ORTHO05D006659 4.7e-66 255.4 248 60.5
Sabra02G0036500 Salix brachista HOM05D005370 ORTHO05D006659 5.1e-65 251.9 253 58.5
CSS0021022 Camellia sinensis var. sinensis HOM05D005370 ORTHO05D006659 1.1e-64 250.8 252 57.9
COL.COLO4_15774 Corchorus olitorius HOM05D005370 ORTHO05D006659 1.5e-64 250.4 249 56.2
Prupe.1G175900 Prunus persica HOM05D005370 ORTHO05D006659 4.4e-64 248.8 249 54.6
Thecc.04G244800 Theobroma cacao HOM05D005370 ORTHO05D006659 5.7e-64 248.4 249 56.6
Phvul.007G177000 Phaseolus vulgaris HOM05D005370 ORTHO05D006659 7.4e-64 248.1 252 56.3
Sopen04g034560 Solanum pennellii HOM05D005370 ORTHO05D006659 9.7e-64 247.7 260 57.7
TWI18G0973 Tripterygium wilfordii HOM05D005370 ORTHO05D006659 9.7e-64 247.7 252 56.7
Hund02875 Selenicereus undatus HOM05D005370 ORTHO05D006659 2.8e-63 246.1 243 58.8
RcHm_v2.0_Chr4g0389631 Rosa chinensis HOM05D005370 ORTHO05D006659 6.3e-63 245.0 250 54.0
FAN22G1699 Fragaria x ananassa HOM05D005370 ORTHO05D006659 8.2e-63 244.6 250 54.0
Potri.002G045500 Populus trichocarpa HOM05D005370 ORTHO05D006659 8.2e-63 244.6 251 57.8
TWI12G0023 Tripterygium wilfordii HOM05D005370 ORTHO05D006659 8.2e-63 244.6 252 56.0
Gohir.A02G035301 Gossypium hirsutum HOM05D005370 ORTHO05D006659 1.1e-62 244.2 250 56.4
Nn3g19501 Nelumbo nucifera HOM05D005370 ORTHO05D006659 1.1e-62 244.2 257 57.2
Solyc04g080950.3 Solanum lycopersicum HOM05D005370 ORTHO05D006659 1.1e-62 244.2 258 57.4
Gorai.005G046600 Gossypium raimondii HOM05D005370 ORTHO05D006659 1.8e-62 243.4 249 55.8
FAN17G2982 Fragaria x ananassa HOM05D005370 ORTHO05D006659 3.1e-62 242.7 250 53.6
Gohir.D02G042266 Gossypium hirsutum HOM05D005370 ORTHO05D006659 3.1e-62 242.7 250 55.6
QL06p015215 Quercus lobata HOM05D005370 ORTHO05D006659 4.1e-62 242.3 249 54.2
CiPaw.02G117200 Carya illinoinensis HOM05D005370 ORTHO05D006659 5.3e-62 241.9 250 55.6
Manes.01G202000 Manihot esculenta HOM05D005370 ORTHO05D006659 5.3e-62 241.9 251 56.6
Peaxi162Scf00434g00622 Petunia axillaris HOM05D005370 ORTHO05D006659 9.1e-62 241.1 252 56.7
VMungo0720G0865 Vigna mungo HOM05D005370 ORTHO05D006659 1.2e-61 240.7 252 57.5
Sed0023556 Sechium edule HOM05D005370 ORTHO05D006659 4.5e-61 238.8 253 55.7
Cfa018256 Carpinus fangiana HOM05D005370 ORTHO05D006659 1.0e-60 237.7 267 51.3
FvH4_4g02310 Fragaria vesca HOM05D005370 ORTHO05D006659 1.3e-60 237.3 250 54.0
Lj5g0014373 Lotus japonicus HOM05D005370 ORTHO05D006659 2.2e-60 236.5 248 58.5
MBI15_g19756_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 2.2e-60 236.5 248 57.7
Sc24g0004270 Simmondsia chinensis HOM05D005370 ORTHO05D006659 6.5e-60 235.0 223 61.4
Cc01_g08030 Coffea canephora HOM05D005370 ORTHO05D006659 8.5e-60 234.6 252 56.0
Migut.D00369 Erythranthe guttata HOM05D005370 ORTHO05D006659 1.1e-59 234.2 254 55.5
CANSAT11G0223 Cannabis sativa HOM05D005370 ORTHO05D006659 2.5e-59 233.0 249 57.4
Ciclev10006717m.g Citrus clementina HOM05D005370 ORTHO05D006659 2.5e-59 233.0 252 55.2
ECA236G0510 Erigeron canadensis HOM05D005370 ORTHO05D006659 4.2e-59 232.3 255 55.3
SalBow4G0733 Salvia bowleyana HOM05D005370 ORTHO05D006659 4.2e-59 232.3 251 55.8
CsaV3_5G004690 Cucumis sativus L. HOM05D005370 ORTHO05D006659 5.5e-59 231.9 262 53.8
CAN.G851.23 Capsicum annuum HOM05D005370 ORTHO05D006659 1.2e-58 230.7 260 54.2
Aqoxy3G04193 Aquilegia oxysepala HOM05D005370 ORTHO05D006659 1.6e-58 230.3 252 56.0
Ca_14753_v3 Cicer arietinum L. HOM05D005370 ORTHO05D006659 1.6e-58 230.3 249 56.6
Ca_24537_v3 Cicer arietinum L. HOM05D005370 ORTHO05D006659 4.7e-58 228.8 249 56.6
MELO3C005475.2 Cucumis melo HOM05D005370 ORTHO05D006659 4.7e-58 228.8 254 55.5
PGSC0003DMG400003760 Solanum tuberosum HOM05D005370 ORTHO05D006659 6.1e-58 228.4 250 56.4
Lalb_Chr02g0142451 Lupinus albus HOM05D005370 ORTHO05D006659 1.8e-57 226.9 249 54.2
Lsat_1_v5_gn_8_94841 Lactuca sativa HOM05D005370 ORTHO05D006659 2.3e-57 226.5 248 53.2
TAR362G0430 Trochodendron aralioides HOM05D005370 ORTHO05D006659 2.3e-57 226.5 241 56.8
CANSAT11G2293 Cannabis sativa HOM05D005370 ORTHO05D006659 3.0e-57 226.1 249 55.8
Duzib052G0322 Durio zibethinus HOM05D005370 ORTHO05D006659 6.7e-57 224.9 295 49.5
HanXRQChr02g0032381 Helianthus annuus HOM05D005370 ORTHO05D006659 2.0e-56 223.4 250 53.2
SGA_v2.0_scaffold580G53040 Striga asiatica HOM05D005370 ORTHO05D006659 3.3e-56 222.6 256 55.1
SGA_v2.0_scaffold3169G54286 Striga asiatica HOM05D005370 ORTHO05D006659 1.3e-55 220.7 257 54.5
DCAR_023471 Daucus carota HOM05D005370 ORTHO05D006659 1.1e-54 217.6 252 50.8
Glyma.10G031500 Glycine max HOM05D005370 ORTHO05D006659 2.4e-54 216.5 248 54.0
Medtr1g070900 Medicago truncatula HOM05D005370 ORTHO05D006659 3.1e-54 216.1 250 56.0
HPP92_015262 Vanilla planifolia HOM05D005370 ORTHO05D006659 7.0e-54 214.9 254 52.0
PSO238G0055 Papaver somniferum HOM05D005370 ORTHO05D006659 4.5e-53 212.2 248 53.6
DCAR_028371 Daucus carota HOM05D005370 ORTHO05D006659 5.9e-53 211.8 264 48.5
PSO210G0029 Papaver somniferum HOM05D005370 ORTHO05D006659 7.7e-53 211.5 248 52.8
Prupe.2G050700 Prunus persica HOM05D005370 ORTHO05D006659 1.3e-52 210.7 249 49.0
FAN12G2588 Fragaria x ananassa HOM05D005370 ORTHO05D006659 5.0e-52 208.8 238 50.8
Actinidia27521 Actinidia chinensis HOM05D005370 ORTHO05D006659 8.5e-52 208.0 259 52.9
ATR0665G285 Amborella trichopoda HOM05D005370 ORTHO05D006659 5.5e-51 205.3 255 51.8
Oeu025788.2 Olea europaea HOM05D005370 ORTHO05D006659 1.8e-49 200.3 217 55.8
arahy.Tifrunner.gnm1.ann1.T9F7M4 Arachis hypogaea HOM05D005370 ORTHO05D006659 2.3e-49 199.9 238 52.1
arahy.Tifrunner.gnm1.ann1.XNPI4G Arachis hypogaea HOM05D005370 ORTHO05D006659 8.8e-49 198.0 250 50.4
Haze_11274 Corylus avellana HOM05D005370 ORTHO05D006659 2.2e-47 193.4 224 51.3
Nn1g02548 Nelumbo nucifera HOM05D005370 ORTHO05D000069 2.2e-47 193.4 218 56.9
MD04G1026200 Malus domestica HOM05D005370 ORTHO05D006659 4.8e-47 192.2 216 52.3
CDE07G1268 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 5.3e-46 188.7 251 45.8
ClCG01G004480 Citrullus lanatus HOM05D005370 ORTHO05D006659 7.0e-46 188.3 232 52.6
arahy.Tifrunner.gnm1.ann1.7J2YFM Arachis hypogaea HOM05D005370 ORTHO05D006659 9.1e-46 188.0 250 48.4
Dinv22486 Davidia involucrata HOM05D005370 ORTHO05D006659 5.9e-45 185.3 213 50.7
Sp2g08480 Schrenkiella parvula HOM05D005370 ORTHO05D006659 8.0e-42 174.9 247 44.9
Cpa.g.sc58.39 Carica papaya HOM05D005370 ORTHO05D006659 1.4e-41 174.1 214 52.8
BcaC06g34636 Brassica carinata HOM05D005370 ORTHO05D006659 2.3e-41 173.3 247 46.6
C07p26250 Brassica napus HOM05D005370 ORTHO05D006659 2.3e-41 173.3 247 46.6
BolC7t43153H Brassica oleracea HOM05D005370 ORTHO05D006659 2.3e-41 173.3 247 46.6
BcaC06g31683 Brassica carinata HOM05D005370 ORTHO05D006659 3.0e-41 172.9 247 46.6
BraA06t27643Z Brassica rapa HOM05D005370 ORTHO05D006659 8.8e-41 171.4 247 44.9
CARHR179930 Cardamine hirsuta HOM05D005370 ORTHO05D006659 2.0e-40 170.2 247 44.1
A06p47750 Brassica napus HOM05D005370 ORTHO05D006659 7.5e-40 168.3 247 45.3
Zm00001eb201750 Zea mays HOM05D005370 ORTHO05D006659 2.8e-39 166.4 268 41.4
Nitab4.5_0001423g0070 Nicotiana tabacum HOM05D005370 ORTHO05D006659 4.8e-39 165.6 277 43.3
AL8G16570 Arabidopsis lyrata HOM05D005370 ORTHO05D006659 6.3e-39 165.2 247 44.9
Thhalv10017901m.g Eutrema salsugineum HOM05D005370 ORTHO05D006659 1.8e-38 163.7 248 45.6
MSTRG.18281 Avicennia marina HOM05D005370 ORTHO05D006659 2.4e-38 163.3 98 83.7
AT5G43680 Arabidopsis thaliana HOM05D005370 ORTHO05D006659 9.1e-38 161.4 247 44.1
Nitab4.5_0001840g0120 Nicotiana tabacum HOM05D005370 ORTHO05D006659 9.1e-38 161.4 125 68.8
Nitab4.5_0002156g0030 Nicotiana tabacum HOM05D005370 ORTHO05D006659 1.2e-37 161.0 125 68.8
Glyma.02G142900 Glycine max HOM05D005370 ORTHO05D006659 1.6e-37 160.6 101 82.2
SGA_v2.0_scaffold138G35287 Striga asiatica HOM05D005370 ORTHO05D006659 1.6e-37 160.6 98 82.7
Prupe.1G027700 Prunus persica HOM05D005370 ORTHO05D006659 4.5e-37 159.1 196 50.5
Carub.0008s0497 Capsella rubella HOM05D005370 ORTHO05D006659 7.7e-37 158.3 247 44.1
Haze_21184 Corylus avellana HOM05D005370 ORTHO05D006659 1.0e-36 157.9 305 37.4
TPR.G39035 Trifolium pratense HOM05D005370 ORTHO05D000069 1.1e-35 154.5 225 48.0
PGSC0003DMG400017885 Solanum tuberosum HOM05D005370 ORTHO05D006659 9.5e-35 151.4 125 66.4
Eucgr.G02606 Eucalyptus grandis HOM05D005370 ORTHO05D006659 2.1e-34 150.2 197 47.7
Nitab4.5_0001903g0040 Nicotiana tabacum HOM05D005370 ORTHO05D006659 2.1e-34 150.2 95 77.9
Psat3g119240 Pisum sativum HOM05D005370 ORTHO05D006659 1.0e-33 147.9 237 43.9
Mapoly0029s0143 Marchantia polymorpha HOM05D005370 ORTHO05D006659 3.0e-33 146.4 263 39.2
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 2.0e-32 143.7 215 43.3
Psat5g092160 Pisum sativum HOM05D009633 ORTHO05D011907 1.3e-31 141.0 128 60.9
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 2.3e-28 130.2 87 74.7
Aa31LG5G3560 Aethionema arabicum HOM05D005370 ORTHO05D006659 5.0e-28 129.0 248 39.1
Sopen01g042090 Solanum pennellii HOM05D005370 ORTHO05D006659 1.1e-27 127.9 183 48.6
Pp3c17_23420 Physcomitrium patens HOM05D005370 ORTHO05D006659 3.3e-27 126.3 258 36.0
Nn8g40523 Nelumbo nucifera HOM05D005370 ORTHO05D006659 2.3e-25 120.2 105 61.0
Os11g0550900 Oryza sativa ssp. japonica HOM05D005370 ORTHO05D006659 5.2e-25 119.0 258 33.3
Psat1g083920 Pisum sativum HOM05D005370 ORTHO05D006659 7.0e-22 108.6 182 42.9
Psat0s8363g0040 Pisum sativum HOM05D005370 ORTHO05D006659 9.2e-22 108.2 182 42.9
CBR_g32014 Chara braunii HOM05D005370 ORTHO05D006659 1.3e-20 104.4 256 31.2
Actinidia19979 Actinidia chinensis HOM05D005370 ORTHO05D006659 8.6e-20 101.7 133 51.9
Nitab4.5_0004235g0010 Nicotiana tabacum HOM05D005370 ORTHO05D006659 3.3e-19 99.8 62 77.4
AagrBONN_evm.TU.Sc2ySwM_228.5248 Anthoceros agrestis HOM05D005370 ORTHO05D006659 3.6e-18 96.3 229 34.1
Cc01_g05510 Coffea canephora HOM05D005370 ORTHO05D006659 4.7e-18 95.9 58 81.0
Duzib212G0616 Durio zibethinus HOM05D005370 ORTHO05D006659 1.2e-16 91.3 189 37.6
MBI11_g15920_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 2.0e-16 90.5 151 44.4
SEGI_11901 Sequoiadendron giganteum HOM05D005370 ORTHO05D006659 1.3e-15 87.8 66 66.7
Cc01_g05520 Coffea canephora HOM05D005370 ORTHO05D006659 8.3e-15 85.1 103 50.5
Psat3g119360 Pisum sativum HOM05D005370 ORTHO05D006659 8.3e-15 85.1 53 77.4
MBI18_g19775_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 2.1e-13 80.5 179 35.2
MBI02_g40862_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 1.3e-12 77.8 163 36.8
MBI16_g44196_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 1.3e-12 77.8 163 38.7
Thhalv10003352m.g Eutrema salsugineum HOM05D005370 ORTHO05D006659 2.3e-12 77.0 157 41.4
Solyc01g098540.3 Solanum lycopersicum HOM05D005370 ORTHO05D006659 3.0e-12 76.6 62 67.7
Psat3g119160 Pisum sativum HOM05D005370 ORTHO05D006659 8.6e-12 75.1 163 36.8
SMO116G0410 Selaginella moellendorffii HOM05D005370 ORTHO05D006659 9.5e-11 71.6 224 31.2
Psat1g084080 Pisum sativum HOM05D005370 ORTHO05D006659 3.6e-10 69.7 147 38.8
MBI16_g45671_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 1.1e-09 68.2 193 32.6
SEGI_21191 Sequoiadendron giganteum HOM05D005370 ORTHO05D006659 4.0e-09 66.2 141 39.0
SEGI_37606 Sequoiadendron giganteum HOM05D005370 ORTHO05D006659 4.1e-06 56.2 54 51.9


User provided reference genes

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