Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g049650 Amaranthus hybridus HOM05D003973 ORTHO05D004679 0.0e+00 1800.4 891 100.0
EL10Ac5g10415 Beta vulgaris HOM05D003973 ORTHO05D004679 0.0e+00 1358.2 948 73.3
AUR62024730 Chenopodium quinoa HOM05D003973 ORTHO05D004679 0.0e+00 1251.9 907 71.8
AUR62011889 Chenopodium quinoa HOM05D003973 ORTHO05D004679 0.0e+00 1241.1 905 71.5
Ciclev10018809m.g Citrus clementina HOM05D003973 ORTHO05D004679 0.0e+00 1169.5 900 66.2
Thecc.01G260300 Theobroma cacao HOM05D003973 ORTHO05D004679 0.0e+00 1164.1 894 66.6
Actinidia12891 Actinidia chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1154.0 886 66.3
Hma1.2p1_0621F.1_g190820 Hydrangea macrophylla HOM05D003973 ORTHO05D004679 0.0e+00 1149.0 886 66.4
COL.COLO4_05173 Corchorus olitorius HOM05D003973 ORTHO05D004679 0.0e+00 1141.3 891 65.7
Hund09596 Selenicereus undatus HOM05D003973 ORTHO05D004679 0.0e+00 1139.8 891 68.4
Manes.12G031400 Manihot esculenta HOM05D003973 ORTHO05D004679 0.0e+00 1139.4 881 65.0
Potri.002G039900 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1137.5 891 66.3
Nn4g22928 Nelumbo nucifera HOM05D003973 ORTHO05D004679 0.0e+00 1135.9 886 64.2
CiPaw.03G262600 Carya illinoinensis HOM05D003973 ORTHO05D004679 0.0e+00 1132.5 866 65.9
Gohir.D11G135600 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1130.9 889 65.5
Gohir.A11G129900 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1130.2 885 65.8
Gorai.007G145200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1129.8 890 65.6
Cpa.g.sc50.33 Carica papaya HOM05D003973 ORTHO05D004679 0.0e+00 1127.9 887 64.6
Atru.chr5.1648 Acer truncatum HOM05D003973 ORTHO05D004679 0.0e+00 1127.5 910 63.3
Gorai.004G072800 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1126.7 887 65.8
Sabra02G0032000 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1125.2 885 65.8
TWI12G0927 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1124.8 883 64.8
CSS0019197 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 0.0e+00 1122.1 891 64.8
Dinv34610 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1120.9 893 66.1
Haze_24609 Corylus avellana HOM05D003973 ORTHO05D004679 0.0e+00 1117.4 919 62.7
TWI75G1776 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1116.7 857 66.0
TAR362G0234 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1116.7 886 64.6
MD05G1199600 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1113.2 896 64.7
Sabra05G0171500 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1113.2 892 64.8
arahy.Tifrunner.gnm1.ann1.M1CRL2 Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1109.4 905 63.3
TWI18G0068 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1109.4 879 64.7
TAR633G0700 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1108.6 883 64.6
Potri.005G222800 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1105.1 873 65.4
Lj1g0003934 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1100.5 883 65.0
Duzib138G0375 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1099.3 885 64.2
MD10G1185900 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1096.6 889 64.5
CAN.G194.11 Capsicum annuum HOM05D003973 ORTHO05D004679 0.0e+00 1096.3 897 63.5
arahy.Tifrunner.gnm1.ann1.0L9E2L Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1094.7 928 61.6
Lj5g0017930 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1093.6 875 64.3
Cc11_g02590 Coffea canephora HOM05D003973 ORTHO05D004679 0.0e+00 1092.8 890 63.1
Medtr1g070160 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1092.0 876 63.9
Nitab4.5_0001419g0010 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1091.6 892 63.7
QL09p038243 Quercus lobata HOM05D003973 ORTHO05D004679 0.0e+00 1091.3 896 63.1
CANSAT01G0525 Cannabis sativa HOM05D003973 ORTHO05D004679 0.0e+00 1090.9 910 61.1
Prupe.8G225400 Prunus persica HOM05D003973 ORTHO05D004679 0.0e+00 1090.5 865 65.1
Lalb_Chr06g0170381 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1090.1 879 63.7
GSVIVG01028304001 Vitis vinifera HOM05D003973 ORTHO05D004679 0.0e+00 1086.6 887 64.3
Nitab4.5_0000129g0340 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1086.2 892 63.5
RcHm_v2.0_Chr6g0288391 Rosa chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1085.5 906 61.9
Glyma.10G035800 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1084.7 880 63.2
PGSC0003DMG400031378 Solanum tuberosum HOM05D003973 ORTHO05D004679 0.0e+00 1083.9 901 62.2
Lalb_Chr02g0152311 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1083.2 881 63.2
Glyma.13G122200 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1082.8 880 63.3
Gohir.D08G207800 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1082.4 891 63.1
Ca_09689_v3 Cicer arietinum L. HOM05D003973 ORTHO05D004679 0.0e+00 1081.2 886 64.8
Phvul.001G159900 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 0.0e+00 1081.2 885 63.4
PGR044G1639 Punica granatum HOM05D003973 ORTHO05D004679 0.0e+00 1081.2 912 61.7
MBI17_g07970_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 0.0e+00 1077.4 888 62.4
Glyma.03G162100 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1076.6 902 63.6
Duzib133G1136 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1075.8 883 63.1
Eucgr.B01536 Eucalyptus grandis HOM05D003973 ORTHO05D004679 0.0e+00 1075.8 878 63.8
FvH4_2g21710 Fragaria vesca HOM05D003973 ORTHO05D004679 1.8e-311 1072.4 888 63.1
Solyc04g008630.3 Solanum lycopersicum HOM05D003973 ORTHO05D004679 1.8e-311 1072.4 915 62.4
Sopen04g003790 Solanum pennellii HOM05D003973 ORTHO05D004679 9.1e-311 1070.1 915 62.3
VMungo1383G0117 Vigna mungo HOM05D003973 ORTHO05D004679 1.2e-310 1069.7 886 63.8
FAN15G1892 Fragaria x ananassa HOM05D003973 ORTHO05D004679 3.5e-310 1068.1 905 62.0
Peaxi162Scf00329g00811 Petunia axillaris HOM05D003973 ORTHO05D004679 4.6e-310 1067.8 914 62.5
ECA247G3763 Erigeron canadensis HOM05D003973 ORTHO05D004679 6.0e-310 1067.4 884 63.7
FAN24G2194 Fragaria x ananassa HOM05D003973 ORTHO05D004679 1.3e-309 1066.2 904 62.2
FAN27G0583 Fragaria x ananassa HOM05D003973 ORTHO05D004679 1.3e-309 1066.2 888 62.7
TPR.G3551 Trifolium pratense HOM05D003973 ORTHO05D004679 1.3e-309 1066.2 891 62.2
Medtr7g096680 Medicago truncatula HOM05D003973 ORTHO05D004679 2.3e-309 1065.4 912 61.5
Glyma.19G163500 Glycine max HOM05D003973 ORTHO05D004679 5.1e-309 1064.3 899 62.8
MSTRG.18316 Avicennia marina HOM05D003973 ORTHO05D004679 1.5e-308 1062.8 890 61.9
Lsat_1_v5_gn_9_8721 Lactuca sativa HOM05D003973 ORTHO05D004679 4.3e-308 1061.2 882 62.8
Oeu026512.1 Olea europaea HOM05D003973 ORTHO05D004679 3.7e-307 1058.1 887 61.7
FAN20G1573 Fragaria x ananassa HOM05D003973 ORTHO05D004679 6.2e-307 1057.4 888 62.6
TPR.G16308 Trifolium pratense HOM05D003973 ORTHO05D004679 6.2e-307 1057.4 887 62.7
Ah.02g111890 Amaranthus hybridus HOM05D003973 ORTHO05D004679 4.0e-306 1054.7 983 60.0
Dinv22416 Davidia involucrata HOM05D003973 ORTHO05D004679 4.0e-306 1054.7 881 63.1
Rhsim13G0034000 Rhododendron simsii HOM05D003973 ORTHO05D004679 5.3e-306 1054.3 899 62.2
Psat3g058480 Pisum sativum HOM05D003973 ORTHO05D004679 5.8e-305 1050.8 811 65.7
Aqoxy1G00848 Aquilegia oxysepala HOM05D003973 ORTHO05D004679 3.8e-304 1048.1 894 59.7
HanXRQChr10g0281061 Helianthus annuus HOM05D003973 ORTHO05D004679 7.9e-302 1040.4 875 62.6
ClCG07G000970 Citrullus lanatus HOM05D003973 ORTHO05D004679 2.5e-300 1035.4 892 59.8
SalBow4G2825 Salvia bowleyana HOM05D003973 ORTHO05D004679 2.5e-300 1035.4 918 60.7
DCAR_000939 Daucus carota HOM05D003973 ORTHO05D004679 1.2e-297 1026.5 810 65.1
Duzib211G0218 Durio zibethinus HOM05D003973 ORTHO05D004679 1.3e-296 1023.1 892 61.0
HanXRQChr15g0467921 Helianthus annuus HOM05D003973 ORTHO05D004679 1.3e-296 1023.1 881 60.8
THA.LOC104826212 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 8.4e-296 1020.4 902 60.5
PSO063G1318 Papaver somniferum HOM05D003973 ORTHO05D004679 8.7e-293 1010.4 889 58.4
Migut.D00414 Erythranthe guttata HOM05D003973 ORTHO05D004679 1.1e-292 1010.0 887 60.7
arahy.Tifrunner.gnm1.ann1.61T5XF Arachis hypogaea HOM05D003973 ORTHO05D004679 2.5e-292 1008.8 874 60.6
Gohir.A08G060000 Gossypium hirsutum HOM05D003973 ORTHO05D004679 5.7e-292 1007.7 880 60.9
DCAR_005697 Daucus carota HOM05D003973 ORTHO05D004679 7.4e-292 1007.3 889 60.1
Carub.0004s1253 Capsella rubella HOM05D003973 ORTHO05D004679 1.6e-291 1006.1 898 60.7
Gorai.004G220200 Gossypium raimondii HOM05D003973 ORTHO05D004679 2.2e-291 1005.7 749 67.6
THA.LOC104800875 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 8.2e-291 1003.8 905 59.7
MELO3C012904.2 Cucumis melo HOM05D003973 ORTHO05D004679 1.4e-290 1003.0 890 58.0
arahy.Tifrunner.gnm1.ann1.B4WKJK Arachis hypogaea HOM05D003973 ORTHO05D004679 2.4e-290 1002.3 874 60.5
Thhalv10016226m.g Eutrema salsugineum HOM05D003973 ORTHO05D004679 3.1e-290 1001.9 900 60.2
AL4G26480 Arabidopsis lyrata HOM05D003973 ORTHO05D004679 6.9e-290 1000.7 898 60.8
PSO782G1372 Papaver somniferum HOM05D003973 ORTHO05D004679 1.5e-289 999.6 899 57.3
CsaV3_3G022520 Cucumis sativus L. HOM05D003973 ORTHO05D004679 2.0e-289 999.2 898 57.7
Gohir.D08G069200 Gossypium hirsutum HOM05D003973 ORTHO05D004679 2.6e-289 998.8 880 60.3
Sed0015853 Sechium edule HOM05D003973 ORTHO05D004679 2.6e-289 998.8 888 57.5
Sed0025131 Sechium edule HOM05D003973 ORTHO05D004679 7.7e-289 997.3 888 57.9
AT2G31260 Arabidopsis thaliana HOM05D003973 ORTHO05D004679 5.0e-288 994.6 901 60.2
CARHR124850 Cardamine hirsuta HOM05D003973 ORTHO05D004679 6.1e-286 987.6 901 59.3
Sp4g13740 Schrenkiella parvula HOM05D003973 ORTHO05D004679 1.0e-285 986.9 896 59.3
Lj2A1153G48 Lonicera japonica HOM05D003973 ORTHO05D004679 1.4e-285 986.5 885 59.5
BolC4t27568H Brassica oleracea HOM05D003973 ORTHO05D004679 5.7e-284 981.1 897 59.3
A04p24090 Brassica napus HOM05D003973 ORTHO05D004679 1.7e-283 979.5 894 58.9
BcaB02g10369 Brassica carinata HOM05D003973 ORTHO05D004679 2.2e-283 979.2 901 59.5
C04p60770 Brassica napus HOM05D003973 ORTHO05D004679 6.3e-283 977.6 906 58.7
BcaB06g28520 Brassica carinata HOM05D003973 ORTHO05D004679 8.2e-283 977.2 897 59.1
Oeu039681.1 Olea europaea HOM05D003973 ORTHO05D004679 9.1e-282 973.8 887 58.4
BraA04t17928Z Brassica rapa HOM05D003973 ORTHO05D004679 2.0e-281 972.6 817 62.5
BcaB06g28436 Brassica carinata HOM05D003973 ORTHO05D004679 4.2e-279 964.9 825 61.9
Lj1A65T50 Lonicera japonica HOM05D003973 ORTHO05D004679 2.6e-276 955.7 863 58.6
Gohir.A08G189300 Gossypium hirsutum HOM05D003973 ORTHO05D004679 7.4e-276 954.1 891 57.5
Aa31LG5G5690 Aethionema arabicum HOM05D003973 ORTHO05D004679 9.7e-276 953.7 794 63.2
Sc17g0000740 Simmondsia chinensis HOM05D003973 ORTHO05D004679 4.1e-274 948.3 595 78.8
SGA_v2.0_scaffold138G35249 Striga asiatica HOM05D003973 ORTHO05D004679 2.9e-272 942.2 882 56.9
Phvul.007G194300 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 2.7e-270 935.6 887 56.5
HanXRQChr08g0217761 Helianthus annuus HOM05D003973 ORTHO05D004679 5.7e-268 927.9 888 56.3
Psat6g055320 Pisum sativum HOM05D003973 ORTHO05D004679 4.8e-267 924.9 905 55.7
Nn3g17035 Nelumbo nucifera HOM05D003973 ORTHO05D004679 2.9e-264 915.6 641 70.5
Oeu058816.4 Olea europaea HOM05D003973 ORTHO05D004679 6.7e-261 904.4 985 51.8
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 9.8e-252 874.0 888 55.2
vmacro02653 Vaccinium macrocarpon HOM05D003973 ORTHO05D004679 2.2e-251 872.8 855 56.5
ATR0680G230 Amborella trichopoda HOM05D003973 ORTHO05D004679 7.7e-249 864.4 814 56.1
Os03g0248000 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 2.0e-241 839.7 880 51.0
ECA236G2624 Erigeron canadensis HOM05D003973 ORTHO05D004679 2.8e-238 829.3 877 51.9
ATR0559G363 Amborella trichopoda HOM05D003973 ORTHO05D004679 9.8e-236 820.8 848 52.0
SHI09836 Sapria himalayana HOM05D003973 ORTHO05D004679 3.0e-232 809.3 935 49.9
HPP92_008425 Vanilla planifolia HOM05D003973 ORTHO05D004679 3.9e-232 808.9 848 52.6
Os10g0163100 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 1.9e-231 806.6 819 50.7
Zm00001eb010620 Zea mays HOM05D003973 ORTHO05D004679 3.7e-227 792.3 883 49.6
SEGI_30090 Sequoiadendron giganteum HOM05D003973 ORTHO05D004679 1.2e-217 760.8 843 50.1
HPP92_008421 Vanilla planifolia HOM05D003973 ORTHO05D004679 2.1e-217 760.0 627 61.2
SMO239G0162 Selaginella moellendorffii HOM05D003973 ORTHO05D004679 1.3e-198 697.6 577 60.0
Mapoly0002s0148 Marchantia polymorpha HOM05D003973 ORTHO05D004679 1.2e-193 681.0 806 45.8
Pp3c10_9800 Physcomitrium patens HOM05D003973 ORTHO05D004679 1.1e-191 674.5 800 45.6
AUR62024729 Chenopodium quinoa HOM05D003973 ORTHO05D004679 4.3e-191 672.5 432 77.5
Pp3c2_1820 Physcomitrium patens HOM05D003973 ORTHO05D004679 4.9e-187 659.1 595 53.4
CiPaw.04G185700 Carya illinoinensis HOM05D003973 ORTHO05D004679 2.7e-185 653.3 589 59.4
BraA05t20372Z Brassica rapa HOM05D003973 ORTHO05D004679 3.2e-178 629.8 628 55.6
A05p14440 Brassica napus HOM05D003973 ORTHO05D004679 1.3e-174 617.8 628 54.5
CBR_g24398 Chara braunii HOM05D003973 ORTHO05D004679 1.3e-171 607.8 624 49.8
unitig_60.g25752 Utricularia gibba HOM05D003973 ORTHO05D004679 3.6e-161 573.2 864 41.1
VMungo0720G0690 Vigna mungo HOM05D003973 ORTHO05D004679 9.7e-159 565.1 585 52.3
AagrBONN_evm.TU.Sc2ySwM_117.1675 Anthoceros agrestis HOM05D003973 ORTHO05D004679 1.4e-128 464.9 576 43.6
MBI18_g15332_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 3.2e-125 453.8 526 48.7
CDE02G3928 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 2.1e-108 397.9 488 45.9
MCO05G121 Micromonas commoda HOM05D003973 ORTHO05D004679 2.1e-105 387.9 586 37.7
BcaB06g28438 Brassica carinata HOM05D003973 ORTHO05D004679 3.3e-98 364.0 408 53.4
BolC4t23456H Brassica oleracea HOM05D003973 ORTHO05D004679 1.7e-94 351.7 265 66.4
CDE06G1379 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.0e-91 342.4 489 44.4
CDE06G1301 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.2e-84 318.9 222 66.2
Cre09.g391500 Chlamydomonas reinhardtii HOM05D003973 ORTHO05D004679 7.9e-84 316.2 705 30.9
C04p19230 Brassica napus HOM05D003973 ORTHO05D004679 6.4e-78 296.6 265 59.6
BcaC02g11207 Brassica carinata HOM05D003973 ORTHO05D004679 1.9e-69 268.5 176 73.3
PRCOL_00006952 Prasinoderma coloniale HOM05D003973 ORTHO05D004679 4.1e-64 250.8 501 30.9
Hund02908 Selenicereus undatus HOM05D003973 ORTHO05D004679 3.8e-62 244.2 162 75.9
Cfa025050 Carpinus fangiana HOM05D003973 ORTHO05D004679 6.7e-59 233.4 527 29.4
Sc17g0000730 Simmondsia chinensis HOM05D003973 ORTHO05D004679 1.7e-49 202.2 361 41.3
Psat2g015440 Pisum sativum HOM05D003973 ORTHO05D004679 3.1e-32 144.8 171 51.5
Hund02909 Selenicereus undatus HOM05D003973 ORTHO05D004679 2.6e-18 98.6 110 52.7
CSS0024912 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 5.7e-18 97.4 74 66.2
BcaB06g28437 Brassica carinata HOM05D003973 ORTHO05D004679 9.8e-18 96.7 70 67.1
AagrBONN_evm.TU.Sc2ySwM_344.134 Anthoceros agrestis HOM05D003973 ORTHO05D004679 2.8e-17 95.1 74 56.8
VMungo0251G0786 Vigna mungo HOM05D003973 ORTHO05D432747 1.7e-06 59.3 61 52.5


User provided reference genes

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