Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g049610 Amaranthus hybridus HOM05D003414 ORTHO05D003913 8.3e-88 327.0 167 100.0
Ah.03g138480 Amaranthus hybridus HOM05D013491 ORTHO05D003913 1.1e-66 256.9 166 83.1
Ah.14g079420 Amaranthus hybridus HOM05D003717 ORTHO05D004848 1.9e-36 156.4 84 97.6
Ah.14g079430 Amaranthus hybridus HOM05D013491 ORTHO05D003913 4.5e-33 145.2 74 95.9
Ah.12g055730 Amaranthus hybridus HOM05D013491 ORTHO05D003913 8.0e-22 107.8 54 96.3
AUR62031250 Chenopodium quinoa HOM05D003414 ORTHO05D003913 3.3e-20 102.4 101 58.4
EL10Ac5g10731 Beta vulgaris HOM05D003414 ORTHO05D003913 4.4e-20 102.1 80 66.2
CiPaw.05G186600 Carya illinoinensis HOM05D003414 ORTHO05D003913 4.4e-20 102.1 80 65.0
AUR62027450 Chenopodium quinoa HOM05D003414 ORTHO05D003913 5.7e-20 101.7 80 66.2
ATR0199G007 Amborella trichopoda HOM05D003414 ORTHO05D003913 7.4e-20 101.3 80 65.0
Aqoxy3G02886 Aquilegia oxysepala HOM05D003414 ORTHO05D003913 1.3e-19 100.5 80 65.0
TAR629G3074 Trochodendron aralioides HOM05D003414 ORTHO05D003913 1.7e-19 100.1 97 56.7
GSVIVG01013784001 Vitis vinifera HOM05D003414 ORTHO05D003913 1.7e-19 100.1 80 65.0
ATR0763G280 Amborella trichopoda HOM05D003414 ORTHO05D003913 2.2e-19 99.8 80 65.0
Prupe.5G031200 Prunus persica HOM05D003414 ORTHO05D003913 2.2e-19 99.8 80 63.8
QL03p059258 Quercus lobata HOM05D003414 ORTHO05D003913 2.8e-19 99.4 80 62.5
TWI18G0866 Tripterygium wilfordii HOM05D003414 ORTHO05D003913 3.7e-19 99.0 80 63.8
Ah.04g152720 Amaranthus hybridus HOM05D003414 ORTHO05D003913 4.8e-19 98.6 101 59.4
FAN11G3592 Fragaria x ananassa HOM05D003414 ORTHO05D003913 4.8e-19 98.6 80 63.8
FAN21G2683 Fragaria x ananassa HOM05D003414 ORTHO05D003913 4.8e-19 98.6 80 63.8
MD06G1037800 Malus domestica HOM05D003414 ORTHO05D003913 4.8e-19 98.6 80 62.5
Psat2g102320 Pisum sativum HOM05D003414 ORTHO05D003913 6.3e-19 98.2 80 60.0
Sc12g0005240 Simmondsia chinensis HOM05D003414 ORTHO05D003913 6.3e-19 98.2 80 62.5
FvH4_3g28340 Fragaria vesca HOM05D003414 ORTHO05D003913 8.2e-19 97.8 80 63.8
Atru.chr11.2070 Acer truncatum HOM05D003414 ORTHO05D003913 1.1e-18 97.4 80 61.2
MD10G1002700 Malus domestica HOM05D003414 ORTHO05D003913 1.1e-18 97.4 80 61.2
Glyma.01G029000 Glycine max HOM05D003414 ORTHO05D003913 1.4e-18 97.1 80 61.2
Medtr5g033930 Medicago truncatula HOM05D003414 ORTHO05D003913 1.4e-18 97.1 80 61.2
PSO063G3439 Papaver somniferum HOM05D003414 ORTHO05D003913 1.4e-18 97.1 80 61.2
PSO832G1583 Papaver somniferum HOM05D003414 ORTHO05D003913 1.4e-18 97.1 80 61.2
Thecc.03G311500 Theobroma cacao HOM05D003414 ORTHO05D003913 1.4e-18 97.1 80 62.5
TAR371G0246 Trochodendron aralioides HOM05D003414 ORTHO05D003913 1.4e-18 97.1 80 61.2
Cfa009179 Carpinus fangiana HOM05D003414 ORTHO05D003913 1.8e-18 96.7 80 61.2
Haze_12213 Corylus avellana HOM05D003414 ORTHO05D003913 1.8e-18 96.7 80 61.2
Prupe.4G272800 Prunus persica HOM05D003414 ORTHO05D003913 1.8e-18 96.7 80 62.5
RcHm_v2.0_Chr2g0115401 Rosa chinensis HOM05D003414 ORTHO05D003913 1.8e-18 96.7 101 54.5
COL.COLO4_16919 Corchorus olitorius HOM05D003414 ORTHO05D003913 2.4e-18 96.3 80 61.2
Phvul.002G064800 Phaseolus vulgaris HOM05D003414 ORTHO05D003913 2.4e-18 96.3 80 61.2
Dinv29446 Davidia involucrata HOM05D003414 ORTHO05D003913 3.1e-18 95.9 80 61.2
FvH4_4g10641 Fragaria vesca HOM05D003414 ORTHO05D003913 3.1e-18 95.9 80 62.5
Lj2g0023712 Lotus japonicus HOM05D003414 ORTHO05D003913 3.1e-18 95.9 80 60.0
VMungo1215G2070 Vigna mungo HOM05D003414 ORTHO05D003913 3.1e-18 95.9 80 60.0
arahy.Tifrunner.gnm1.ann1.1EZN5T Arachis hypogaea HOM05D003414 ORTHO05D003913 4.1e-18 95.5 79 60.8
Ca_03139_v3 Cicer arietinum L. HOM05D003414 ORTHO05D003913 4.1e-18 95.5 80 60.0
Glyma.02G036200 Glycine max HOM05D003414 ORTHO05D003913 4.1e-18 95.5 80 58.8
Gohir.D08G174000 Gossypium hirsutum HOM05D003414 ORTHO05D003913 4.1e-18 95.5 80 61.2
Gorai.004G181700 Gossypium raimondii HOM05D003414 ORTHO05D003913 4.1e-18 95.5 80 61.2
Nn3g18717 Nelumbo nucifera HOM05D003414 ORTHO05D003913 4.1e-18 95.5 80 60.0
Hund09448 Selenicereus undatus HOM05D003414 ORTHO05D003913 4.1e-18 95.5 80 61.2
vmacro01152 Vaccinium macrocarpon HOM05D003414 ORTHO05D003913 4.1e-18 95.5 80 62.5
Actinidia13495 Actinidia chinensis HOM05D003414 ORTHO05D003913 5.3e-18 95.1 80 60.0
AL6G15560 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 5.3e-18 95.1 80 60.0
BcaB01g05959 Brassica carinata HOM05D003414 ORTHO05D003913 5.3e-18 95.1 80 60.0
BcaC06g32272 Brassica carinata HOM05D003414 ORTHO05D003913 5.3e-18 95.1 80 60.0
A03p02400 Brassica napus HOM05D000093 ORTHO05D003913 5.3e-18 95.1 80 60.0
A10p30690 Brassica napus HOM05D003414 ORTHO05D003913 5.3e-18 95.1 80 60.0
C03p02730 Brassica napus HOM05D003414 ORTHO05D003913 5.3e-18 95.1 80 60.0
C09p71170 Brassica napus HOM05D003414 ORTHO05D003913 5.3e-18 95.1 80 60.0
BolC3t12827H Brassica oleracea HOM05D003414 ORTHO05D003913 5.3e-18 95.1 80 60.0
BolC9t59879H Brassica oleracea HOM05D003414 ORTHO05D003913 5.3e-18 95.1 80 60.0
BraA03t09601Z Brassica rapa HOM05D003414 ORTHO05D003913 5.3e-18 95.1 80 60.0
BraA10t45110Z Brassica rapa HOM05D003414 ORTHO05D003913 5.3e-18 95.1 80 60.0
MELO3C011981.2 Cucumis melo HOM05D003414 ORTHO05D003913 5.3e-18 95.1 80 58.8
CsaV3_5G031410 Cucumis sativus L. HOM05D003414 ORTHO05D003913 5.3e-18 95.1 80 58.8
Thhalv10014432m.g Eutrema salsugineum HOM05D003414 ORTHO05D003913 5.3e-18 95.1 80 60.0
FAN22G0068 Fragaria x ananassa HOM05D003414 ORTHO05D003913 5.3e-18 95.1 80 62.5
Gohir.A03G000026 Gossypium hirsutum HOM05D003414 ORTHO05D003913 5.3e-18 95.1 80 61.2
RcHm_v2.0_Chr7g0219271 Rosa chinensis HOM05D003414 ORTHO05D003913 5.3e-18 95.1 101 53.5
Sed0017421 Sechium edule HOM05D003414 ORTHO05D003913 5.3e-18 95.1 80 58.8
TPR.G16233 Trifolium pratense HOM05D003414 ORTHO05D003913 5.3e-18 95.1 80 58.8
BcaB01g05755 Brassica carinata HOM05D003414 ORTHO05D003913 7.0e-18 94.7 80 58.8
BcaB03g16667 Brassica carinata HOM05D003414 ORTHO05D003913 7.0e-18 94.7 80 60.0
A07p01870 Brassica napus HOM05D001097 ORTHO05D001009 7.0e-18 94.7 80 60.0
BraA07t27987Z Brassica rapa HOM05D003414 ORTHO05D003913 7.0e-18 94.7 80 60.0
CANSAT01G0332 Cannabis sativa HOM05D003414 ORTHO05D003913 7.0e-18 94.7 80 58.8
CARHR109370 Cardamine hirsuta HOM05D003414 ORTHO05D003913 7.0e-18 94.7 80 60.0
Lalb_Chr09g0326281 Lupinus albus HOM05D003414 ORTHO05D003913 7.0e-18 94.7 80 57.5
Sp3g32260 Schrenkiella parvula HOM05D003414 ORTHO05D003913 7.0e-18 94.7 80 60.0
THA.LOC104807784 Tarenaya hassleriana HOM05D003414 ORTHO05D003913 7.0e-18 94.7 80 56.2
BcaC06g36459 Brassica carinata HOM05D003414 ORTHO05D003913 9.1e-18 94.4 80 58.8
C07p04000 Brassica napus HOM05D001097 ORTHO05D001009 9.1e-18 94.4 80 58.8
BolC7t40789H Brassica oleracea HOM05D003414 ORTHO05D003913 9.1e-18 94.4 80 58.8
CDE07G0297 Ceratophyllum demersum HOM05D003414 ORTHO05D003913 9.1e-18 94.4 80 56.2
FAN07G0063 Fragaria x ananassa HOM05D003414 ORTHO05D003913 9.1e-18 94.4 80 61.2
ECA232G2835 Erigeron canadensis HOM05D003414 ORTHO05D003913 1.2e-17 94.0 101 51.5
Oeu059926.1 Olea europaea HOM05D003414 ORTHO05D003913 1.2e-17 94.0 80 58.8
Rhsim12G0043300 Rhododendron simsii HOM05D003414 ORTHO05D003913 1.2e-17 94.0 80 61.2
Sp6g37220 Schrenkiella parvula HOM05D003414 ORTHO05D003913 1.2e-17 94.0 80 58.8
AT5G05670 Arabidopsis thaliana HOM05D003414 ORTHO05D003913 1.6e-17 93.6 80 58.8
Lalb_Chr16g0382141 Lupinus albus HOM05D003414 ORTHO05D003913 1.6e-17 93.6 80 57.5
Manes.13G027800 Manihot esculenta HOM05D003414 ORTHO05D003913 1.6e-17 93.6 80 60.0
Sed0009810 Sechium edule HOM05D003414 ORTHO05D003913 1.6e-17 93.6 80 57.5
Carub.0006s0456 Capsella rubella HOM05D003414 ORTHO05D003913 2.0e-17 93.2 80 58.8
CARHR207610 Cardamine hirsuta HOM05D003414 ORTHO05D003913 2.0e-17 93.2 80 58.8
Ciclev10032463m.g Citrus clementina HOM05D003414 ORTHO05D003913 2.0e-17 93.2 80 58.8
Gohir.D03G176800 Gossypium hirsutum HOM05D003414 ORTHO05D003913 2.0e-17 93.2 80 60.0
Gorai.003G186100 Gossypium raimondii HOM05D003414 ORTHO05D003913 2.0e-17 93.2 80 60.0
Medtr4g071550 Medicago truncatula HOM05D003414 ORTHO05D003913 2.0e-17 93.2 80 57.5
Thhalv10022817m.g Eutrema salsugineum HOM05D003414 ORTHO05D003913 2.6e-17 92.8 80 56.2
Gohir.A08G153100 Gossypium hirsutum HOM05D003414 ORTHO05D003913 2.6e-17 92.8 80 60.0
HanXRQChr13g0415431 Helianthus annuus HOM05D003414 ORTHO05D003913 2.6e-17 92.8 101 51.5
Hma1.2p1_0160F.1_g071100 Hydrangea macrophylla HOM05D003414 ORTHO05D003913 2.6e-17 92.8 80 58.8
THA.LOC104824779 Tarenaya hassleriana HOM05D003414 ORTHO05D003913 2.6e-17 92.8 80 56.2
HPP92_005090 Vanilla planifolia HOM05D003414 ORTHO05D003913 2.6e-17 92.8 80 61.2
HPP92_024705 Vanilla planifolia HOM05D003414 ORTHO05D003913 2.6e-17 92.8 80 61.2
CSS0045981 Camellia sinensis var. sinensis HOM05D003414 ORTHO05D003913 3.5e-17 92.4 80 58.8
ClCG05G025490 Citrullus lanatus HOM05D003414 ORTHO05D003913 3.5e-17 92.4 80 57.5
Nitab4.5_0000329g0140 Nicotiana tabacum HOM05D003414 ORTHO05D003913 3.5e-17 92.4 80 58.8
Peaxi162Scf00086g00133 Petunia axillaris HOM05D003414 ORTHO05D003913 3.5e-17 92.4 80 58.8
Potri.002G020900 Populus trichocarpa HOM05D003414 ORTHO05D003913 3.5e-17 92.4 80 60.0
PGR119G0039 Punica granatum HOM05D003414 ORTHO05D003913 3.5e-17 92.4 80 57.5
Actinidia08151 Actinidia chinensis HOM05D003414 ORTHO05D003913 4.5e-17 92.0 80 58.8
Hund02753 Selenicereus undatus HOM05D003414 ORTHO05D003913 4.5e-17 92.0 79 62.0
TPR.G21092 Trifolium pratense HOM05D003414 ORTHO05D003913 4.5e-17 92.0 80 57.5
Aa31LG8G15890 Aethionema arabicum HOM05D003414 ORTHO05D003913 5.9e-17 91.7 80 57.5
Glyma.08G284800 Glycine max HOM05D003414 ORTHO05D003913 5.9e-17 91.7 80 58.8
Lsat_1_v5_gn_5_70981 Lactuca sativa HOM05D003414 ORTHO05D003913 5.9e-17 91.7 101 49.5
Lsat_1_v5_gn_9_116520 Lactuca sativa HOM05D003414 ORTHO05D003913 5.9e-17 91.7 101 49.5
MBI10_g27995_MAGBIO Magnolia biondii HOM05D003414 ORTHO05D003913 5.9e-17 91.7 80 57.5
Nitab4.5_0001819g0040 Nicotiana tabacum HOM05D003414 ORTHO05D003913 5.9e-17 91.7 80 56.2
RcHm_v2.0_Chr4g0406261 Rosa chinensis HOM05D003414 ORTHO05D003913 5.9e-17 91.7 101 52.5
Lsat_1_v5_gn_1_119941 Lactuca sativa HOM05D003414 ORTHO05D003913 7.7e-17 91.3 101 49.5
Lsat_1_v5_gn_5_52981 Lactuca sativa HOM05D003414 ORTHO05D003913 7.7e-17 91.3 101 49.5
Lsat_1_v5_gn_6_83720 Lactuca sativa HOM05D003414 ORTHO05D003913 7.7e-17 91.3 101 49.5
Manes.12G026100 Manihot esculenta HOM05D003414 ORTHO05D003913 7.7e-17 91.3 80 58.8
Psat7g182200 Pisum sativum HOM05D003414 ORTHO05D003913 1.0e-16 90.9 80 57.5
Solyc03g112450.4 Solanum lycopersicum HOM05D003414 ORTHO05D003913 1.0e-16 90.9 80 56.2
PGSC0003DMG400000451 Solanum tuberosum HOM05D003414 ORTHO05D003913 1.0e-16 90.9 80 56.2
Eucgr.H02550 Eucalyptus grandis HOM05D003414 ORTHO05D003913 1.3e-16 90.5 80 58.8
Sabra02G0017100 Salix brachista HOM05D000201 ORTHO05D000490 1.3e-16 90.5 79 59.5
AL3G22240 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 1.7e-16 90.1 80 57.5
AL3G39940 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 1.7e-16 90.1 80 57.5
AL6G39020 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 1.7e-16 90.1 80 57.5
Carub.0003s3304 Capsella rubella HOM05D003414 ORTHO05D003913 1.7e-16 90.1 80 56.2
Oeu056411.1 Olea europaea HOM05D003414 ORTHO05D003913 1.7e-16 90.1 80 56.2
RcHm_v2.0_Chr5g0051221 Rosa chinensis HOM05D003414 ORTHO05D003913 1.7e-16 90.1 79 60.8
Solyc11g043150.2 Solanum lycopersicum HOM05D003414 ORTHO05D003913 1.7e-16 90.1 80 56.2
Duzib084G0257 Durio zibethinus HOM05D003414 ORTHO05D003913 2.2e-16 89.7 101 51.5
Sopen03g031530 Solanum pennellii HOM05D003414 ORTHO05D003913 2.2e-16 89.7 80 55.0
Nitab4.5_0004438g0070 Nicotiana tabacum HOM05D003414 ORTHO05D003913 2.9e-16 89.4 80 57.5
Duzib205G0939 Durio zibethinus HOM05D003414 ORTHO05D003913 3.8e-16 89.0 80 58.8
Migut.L01464 Erythranthe guttata HOM05D003414 ORTHO05D003913 3.8e-16 89.0 80 57.5
Nitab4.5_0000570g0070 Nicotiana tabacum HOM05D003414 ORTHO05D003913 3.8e-16 89.0 80 57.5
Peaxi162Scf00086g00329 Petunia axillaris HOM05D003414 ORTHO05D003913 3.8e-16 89.0 80 56.2
SalBow8G5473 Salvia bowleyana HOM05D003414 ORTHO05D003913 3.8e-16 89.0 80 56.2
ECA248G2324 Erigeron canadensis HOM05D003414 ORTHO05D003913 5.0e-16 88.6 79 58.2
Os08g0524000 Oryza sativa ssp. japonica HOM05D003414 ORTHO05D003913 5.0e-16 88.6 79 58.2
SGA_v2.0_scaffold63G21706 Striga asiatica HOM05D003414 ORTHO05D003913 5.0e-16 88.6 80 56.2
Cc01_g10380 Coffea canephora HOM05D003414 ORTHO05D003913 6.5e-16 88.2 80 52.5
DCAR_010112 Daucus carota HOM05D003414 ORTHO05D003913 6.5e-16 88.2 80 56.2
Lj6A808T47 Lonicera japonica HOM05D003414 ORTHO05D003913 6.5e-16 88.2 78 59.0
unitig_22.g6429 Utricularia gibba HOM05D003414 ORTHO05D003913 6.5e-16 88.2 79 59.5
Aqoxy6G00029 Aquilegia oxysepala HOM05D003414 ORTHO05D003913 8.5e-16 87.8 80 57.5
AL3G53170 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 8.5e-16 87.8 80 56.2
CAN.G546.30 Capsicum annuum HOM05D003414 ORTHO05D003913 8.5e-16 87.8 80 55.0
Zm00001eb042120 Zea mays HOM05D003414 ORTHO05D003913 8.5e-16 87.8 79 57.0
Hma1.2p1_0223F.1_g094350 Hydrangea macrophylla HOM05D003414 ORTHO05D003913 1.5e-15 87.0 82 57.3
Sopen11g019580 Solanum pennellii HOM05D003414 ORTHO05D003913 1.9e-15 86.7 80 55.0
DCAR_001175 Daucus carota HOM05D003414 ORTHO05D003913 2.5e-15 86.3 79 55.7
SEGI_26072 Sequoiadendron giganteum HOM05D003414 ORTHO05D003913 2.5e-15 86.3 80 55.0
MSTRG.13359 Avicennia marina HOM05D003414 ORTHO05D003913 3.2e-15 85.9 80 56.2
Lj2A165T38 Lonicera japonica HOM05D003414 ORTHO05D003913 5.5e-15 85.1 80 53.8
AT2G18770 Arabidopsis thaliana HOM05D003414 ORTHO05D003913 1.2e-14 84.0 80 52.5
SEGI_19255 Sequoiadendron giganteum HOM05D003414 ORTHO05D003913 2.1e-14 83.2 80 55.0
Zm00001eb178650 Zea mays HOM05D003414 ORTHO05D003913 2.1e-14 83.2 79 53.2
Mapoly0005s0007 Marchantia polymorpha HOM05D003414 ORTHO05D003913 8.0e-14 81.3 79 53.2
Os06g0473100 Oryza sativa ssp. japonica HOM05D003414 ORTHO05D003913 8.0e-14 81.3 77 58.4
GSVIVG01007725001 Vitis vinifera HOM05D003414 ORTHO05D003913 5.2e-13 78.6 80 51.2
PSO063G2065 Papaver somniferum HOM05D003414 ORTHO05D003913 1.2e-12 77.4 81 55.6
AL4G18520 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 2.0e-12 76.6 69 55.1
AL6G25810 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 2.0e-12 76.6 75 50.7
Psat3g172320 Pisum sativum HOM05D003414 ORTHO05D003913 2.2e-11 73.2 78 52.6
AagrBONN_evm.TU.Sc2ySwM_344.3880 Anthoceros agrestis HOM05D003414 ORTHO05D003913 2.8e-11 72.8 110 40.0
AagrBONN_evm.TU.Sc2ySwM_344.3882 Anthoceros agrestis HOM05D003414 ORTHO05D003913 2.8e-11 72.8 110 40.0
SMO116G0362 Selaginella moellendorffii HOM05D003414 ORTHO05D003913 3.7e-11 72.4 79 46.8
unitig_8.g3149 Utricularia gibba HOM05D003414 ORTHO05D003913 3.7e-11 72.4 79 51.9
Potri.009G001600 Populus trichocarpa HOM05D003414 ORTHO05D003913 2.4e-10 69.7 71 54.9
CBR_g6524 Chara braunii HOM05D003414 ORTHO05D003913 2.0e-09 66.6 79 48.1
Psat1g056440 Pisum sativum HOM05D003414 ORTHO05D003913 2.7e-09 66.2 60 56.7
FAN25G3364 Fragaria x ananassa HOM05D003414 ORTHO05D003913 3.5e-09 65.9 51 62.7
Pp3c4_20930 Physcomitrium patens HOM05D003414 ORTHO05D003913 7.7e-09 64.7 78 42.3
SalBow2G0701 Salvia bowleyana HOM05D003414 ORTHO05D003913 7.7e-09 64.7 59 59.3
MCO02G138 Micromonas commoda HOM05D003414 ORTHO05D003913 2.9e-08 62.8 79 43.0
CDE06G2515 Ceratophyllum demersum HOM05D003414 ORTHO05D003913 4.7e-06 55.5 50 50.0


User provided reference genes

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