Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g049570 Amaranthus hybridus HOM05D005357 ORTHO05D006354 1.2e-250 869.4 442 100.0
EL10As5g23477 Beta vulgaris HOM05D005357 ORTHO05D006354 4.6e-202 708.0 445 83.1
AUR62011861 Chenopodium quinoa HOM05D005357 ORTHO05D006354 6.7e-177 624.4 445 75.1
AUR62024704 Chenopodium quinoa HOM05D005357 ORTHO05D006354 5.7e-176 621.3 445 74.4
Hund09607 Selenicereus undatus HOM05D005357 ORTHO05D006354 5.9e-149 531.6 431 67.1
Hund02920 Selenicereus undatus HOM05D005357 ORTHO05D006354 5.2e-145 518.5 444 65.3
QL07p036221 Quercus lobata HOM05D005357 ORTHO05D006354 1.0e-121 441.0 503 53.1
CANSAT35G1827 Cannabis sativa HOM05D005357 ORTHO05D006354 1.1e-118 431.0 491 54.0
CiPaw.09G205000 Carya illinoinensis HOM05D005357 ORTHO05D006354 2.4e-118 429.9 503 52.9
Thecc.05G023500 Theobroma cacao HOM05D005357 ORTHO05D006354 7.0e-118 428.3 495 54.3
Cfa017262 Carpinus fangiana HOM05D005357 ORTHO05D006354 1.2e-117 427.6 508 53.3
Duzib093G0024 Durio zibethinus HOM05D005357 ORTHO05D006354 1.6e-117 427.2 495 53.1
Duzib106G1773 Durio zibethinus HOM05D005357 ORTHO05D006354 1.0e-116 424.5 496 53.8
COL.COLO4_14619 Corchorus olitorius HOM05D005357 ORTHO05D006354 1.7e-116 423.7 495 52.9
Gohir.A09G163000 Gossypium hirsutum HOM05D005357 ORTHO05D006354 2.3e-116 423.3 493 54.2
Glyma.07G144300 Glycine max HOM05D005357 ORTHO05D006354 8.6e-116 421.4 450 56.2
TAR633G0560 Trochodendron aralioides HOM05D005357 ORTHO05D006354 1.2e-114 417.5 522 51.1
arahy.Tifrunner.gnm1.ann1.H8VZ0K Arachis hypogaea HOM05D005357 ORTHO05D006354 5.2e-113 412.1 448 56.2
Glyma.18G195500 Glycine max HOM05D005357 ORTHO05D006354 5.2e-113 412.1 451 56.5
Duzib128G1243 Durio zibethinus HOM05D005357 ORTHO05D006354 1.5e-112 410.6 493 52.3
Haze_20938 Corylus avellana HOM05D005357 ORTHO05D006354 2.0e-112 410.2 499 53.5
arahy.Tifrunner.gnm1.ann1.5ZZ6F4 Arachis hypogaea HOM05D005357 ORTHO05D006354 1.7e-111 407.1 467 54.8
Gorai.006G180200 Gossypium raimondii HOM05D005357 ORTHO05D006354 1.7e-111 407.1 493 52.5
Gohir.D09G158500 Gossypium hirsutum HOM05D005357 ORTHO05D006354 2.2e-111 406.8 496 50.8
Medtr7g066710 Medicago truncatula HOM05D005357 ORTHO05D006354 1.1e-110 404.4 446 55.4
CsaV3_3G034230 Cucumis sativus L. HOM05D005357 ORTHO05D006354 2.4e-110 403.3 475 52.6
Phvul.008G108800 Phaseolus vulgaris HOM05D005357 ORTHO05D006354 4.1e-110 402.5 451 56.3
ClCG10G021740 Citrullus lanatus HOM05D005357 ORTHO05D006354 3.5e-109 399.4 495 50.9
Nitab4.5_0006254g0010 Nicotiana tabacum HOM05D005357 ORTHO05D006354 4.6e-109 399.1 507 50.3
Sed0007832 Sechium edule HOM05D005357 ORTHO05D006354 1.3e-108 397.5 428 55.1
Prupe.6G269500 Prunus persica HOM05D005357 ORTHO05D006354 3.0e-108 396.4 388 59.5
Peaxi162Scf00141g00133 Petunia axillaris HOM05D005357 ORTHO05D006354 5.1e-108 395.6 506 50.2
Medtr7g056183 Medicago truncatula HOM05D005357 ORTHO05D006354 6.6e-108 395.2 448 55.4
TAR636G3085 Trochodendron aralioides HOM05D005357 ORTHO05D006354 6.6e-108 395.2 406 57.1
TWI77G0073 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 8.6e-108 394.8 500 49.0
Potri.006G095600 Populus trichocarpa HOM05D005357 ORTHO05D006354 5.6e-107 392.1 485 53.0
Lj3g0024478 Lotus japonicus HOM05D005357 ORTHO05D006354 2.1e-106 390.2 442 51.8
Manes.08G086900 Manihot esculenta HOM05D005357 ORTHO05D006354 6.2e-106 388.7 500 53.0
Actinidia29139 Actinidia chinensis HOM05D005357 ORTHO05D006354 1.4e-105 387.5 504 48.4
Dinv37091 Davidia involucrata HOM05D005357 ORTHO05D006354 1.4e-105 387.5 511 49.9
MELO3C009198.2 Cucumis melo HOM05D005357 ORTHO05D006354 3.1e-105 386.3 472 51.1
TWI74G0304 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 3.1e-105 386.3 394 56.9
Actinidia13789 Actinidia chinensis HOM05D005357 ORTHO05D006354 4.0e-105 386.0 507 47.7
Ciclev10011563m.g Citrus clementina HOM05D005357 ORTHO05D006354 4.0e-105 386.0 506 49.0
Ca_09168_v3 Cicer arietinum L. HOM05D005357 ORTHO05D006354 6.8e-105 385.2 445 53.3
Hma1.2p1_0703F.1_g206335 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 1.5e-104 384.0 509 48.9
CAN.G284.13 Capsicum annuum HOM05D005357 ORTHO05D006354 2.2e-103 380.2 505 49.5
MD12G1159000 Malus domestica HOM05D005357 ORTHO05D006354 2.2e-103 380.2 389 58.4
Gorai.012G111100 Gossypium raimondii HOM05D005357 ORTHO05D006354 1.1e-102 377.9 383 58.2
Lalb_Chr01g0022881 Lupinus albus HOM05D005357 ORTHO05D006354 1.4e-102 377.5 447 52.6
Lj2A78G31 Lonicera japonica HOM05D005357 ORTHO05D006354 1.9e-102 377.1 480 51.2
Nitab4.5_0000008g0560 Nicotiana tabacum HOM05D005357 ORTHO05D006354 5.4e-102 375.6 505 48.9
Gohir.A04G087700 Gossypium hirsutum HOM05D005357 ORTHO05D006354 7.1e-102 375.2 381 57.7
Nn1g02852 Nelumbo nucifera HOM05D005357 ORTHO05D006354 1.6e-101 374.0 525 48.8
Eucgr.B02762 Eucalyptus grandis HOM05D005357 ORTHO05D006354 2.7e-101 373.2 514 47.1
Cpa.g.sc312.3 Carica papaya HOM05D005357 ORTHO05D006354 4.6e-101 372.5 496 50.0
RcHm_v2.0_Chr3g0463991 Rosa chinensis HOM05D005357 ORTHO05D006354 4.6e-101 372.5 391 57.0
GSVIVG01034021001 Vitis vinifera HOM05D005357 ORTHO05D006354 3.9e-100 369.4 445 50.1
TPR.G1557 Trifolium pratense HOM05D005357 ORTHO05D006354 6.6e-100 368.6 387 55.6
FAN14G2781 Fragaria x ananassa HOM05D005357 ORTHO05D006354 2.5e-99 366.7 404 56.2
FvH4_6g12190 Fragaria vesca HOM05D005357 ORTHO05D006354 3.3e-99 366.3 391 57.0
FAN09G0023 Fragaria x ananassa HOM05D005357 ORTHO05D006354 3.3e-99 366.3 391 57.0
FAN14G1666 Fragaria x ananassa HOM05D005357 ORTHO05D006354 3.3e-99 366.3 391 57.0
PGR031G1436 Punica granatum HOM05D005357 ORTHO05D006354 3.3e-99 366.3 526 46.6
MD04G1145200 Malus domestica HOM05D005357 ORTHO05D006354 1.2e-98 364.4 388 56.4
FAN02G3235 Fragaria x ananassa HOM05D005357 ORTHO05D006354 1.6e-98 364.0 391 57.0
FAN05G3392 Fragaria x ananassa HOM05D005357 ORTHO05D006354 3.6e-98 362.8 391 56.8
vmacro01296 Vaccinium macrocarpon HOM05D005357 ORTHO05D006354 8.1e-98 361.7 497 46.9
Cc06_g01760 Coffea canephora HOM05D005357 ORTHO05D006354 1.1e-97 361.3 508 47.2
MBI06_g17209_MAGBIO Magnolia biondii HOM05D005357 ORTHO05D006354 1.8e-97 360.5 522 46.9
Sc05g0000650 Simmondsia chinensis HOM05D005357 ORTHO05D006354 2.6e-96 356.7 446 50.2
Lalb_Chr03g0042941 Lupinus albus HOM05D005357 ORTHO05D006354 1.7e-95 354.0 449 49.2
Gohir.D04G128100 Gossypium hirsutum HOM05D005357 ORTHO05D006354 1.6e-93 347.4 383 54.8
SalBow3G4061 Salvia bowleyana HOM05D005357 ORTHO05D006354 3.0e-92 343.2 498 46.0
MSTRG.5603 Avicennia marina HOM05D005357 ORTHO05D006354 6.6e-92 342.0 393 53.4
PGSC0003DMG402020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 1.1e-91 341.3 470 46.6
Migut.J00234 Erythranthe guttata HOM05D005357 ORTHO05D006354 3.3e-91 339.7 423 48.7
Aqoxy1G00739 Aquilegia oxysepala HOM05D005357 ORTHO05D006354 2.8e-90 336.7 409 52.8
Sopen09g006960 Solanum pennellii HOM05D005357 ORTHO05D006354 1.8e-89 334.0 468 45.9
DCAR_005589 Daucus carota HOM05D005357 ORTHO05D006354 4.4e-88 329.3 509 43.6
SGA_v2.0_scaffold85G26772 Striga asiatica HOM05D005357 ORTHO05D006354 2.4e-86 323.6 388 50.8
THA.LOC104827038 Tarenaya hassleriana HOM05D005357 ORTHO05D006354 9.3e-86 321.6 391 51.7
PSO585G0030 Papaver somniferum HOM05D005357 ORTHO05D006354 3.5e-85 319.7 419 50.8
HPP92_021066 Vanilla planifolia HOM05D005357 ORTHO05D006354 7.9e-85 318.5 414 48.6
PSO384G3148 Papaver somniferum HOM05D005357 ORTHO05D006354 5.1e-84 315.8 419 50.6
Aa31LG1G22800 Aethionema arabicum HOM05D005357 ORTHO05D006354 1.9e-83 313.9 449 45.0
Sabra06G0073400 Salix brachista HOM05D005357 ORTHO05D006354 2.8e-82 310.1 580 41.6
Carub.0006s0073 Capsella rubella HOM05D005357 ORTHO05D006354 3.8e-79 299.7 445 45.2
A10p33610 Brassica napus HOM05D005357 ORTHO05D006354 1.9e-78 297.4 449 45.0
Sp6g40520 Schrenkiella parvula HOM05D005357 ORTHO05D006354 6.0e-77 292.4 398 47.2
CDE04G3126 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 3.3e-75 286.6 407 47.4
AL6G11040 Arabidopsis lyrata HOM05D005357 ORTHO05D006354 4.3e-75 286.2 448 44.6
SGA_v2.0_scaffold75G24995 Striga asiatica HOM05D005357 ORTHO05D006354 4.3e-75 286.2 328 53.7
BraA10t45393Z Brassica rapa HOM05D005357 ORTHO05D006354 7.4e-75 285.4 398 48.2
CARHR211480 Cardamine hirsuta HOM05D005357 ORTHO05D006354 2.8e-74 283.5 390 47.4
BcaNung02762 Brassica carinata HOM05D005357 ORTHO05D006354 3.7e-74 283.1 449 43.4
Oeu044369.1 Olea europaea HOM05D005357 ORTHO05D006354 4.8e-74 282.7 488 41.4
Thhalv10014073m.g Eutrema salsugineum HOM05D005357 ORTHO05D006354 6.2e-74 282.3 380 47.6
HanXRQChr13g0406371 Helianthus annuus HOM05D005357 ORTHO05D006354 1.1e-73 281.6 465 41.7
BcaB05g21942 Brassica carinata HOM05D005357 ORTHO05D006354 1.8e-73 280.8 393 47.1
ECA248G2096 Erigeron canadensis HOM05D005357 ORTHO05D006354 1.8e-73 280.8 458 43.7
Dinv03649 Davidia involucrata HOM05D005357 ORTHO05D006354 2.4e-73 280.4 404 48.5
Os10g0494500 Oryza sativa ssp. japonica HOM05D005357 ORTHO05D006354 4.0e-73 279.6 379 47.2
AT5G01160 Arabidopsis thaliana HOM05D005357 ORTHO05D006354 5.3e-73 279.3 404 47.0
C09p74540 Brassica napus HOM05D005357 ORTHO05D006354 5.8e-72 275.8 389 47.6
BolC9t60186H Brassica oleracea HOM05D005357 ORTHO05D006354 1.3e-71 274.6 389 47.6
Oeu030537.4 Olea europaea HOM05D005357 ORTHO05D006354 3.8e-71 273.1 386 45.3
Zm00001eb044800 Zea mays HOM05D005357 ORTHO05D006354 4.9e-71 272.7 430 43.7
CDE03G0086 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 2.1e-69 267.3 402 44.5
BcaNung02766 Brassica carinata HOM05D005357 ORTHO05D006354 2.1e-66 257.3 400 44.0
Lsat_1_v5_gn_5_155380 Lactuca sativa HOM05D005357 ORTHO05D006354 2.4e-65 253.8 232 59.1
Psat3g131000 Pisum sativum HOM05D005357 ORTHO05D006354 1.5e-64 251.1 367 47.4
Zm00001eb221140 Zea mays HOM05D005357 ORTHO05D006354 4.2e-62 243.0 272 51.5
HanXRQChr13g0397571 Helianthus annuus HOM05D005357 ORTHO05D006354 3.3e-59 233.4 435 38.2
CSS0020158 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 1.6e-58 231.1 392 44.1
HanXRQChr13g0397921 Helianthus annuus HOM05D005357 ORTHO05D006354 4.8e-58 229.6 267 46.8
VMungo1383G1762 Vigna mungo HOM05D005357 ORTHO05D006354 1.4e-57 228.0 332 47.6
unitig_22.g6590 Utricularia gibba HOM05D005357 ORTHO05D006354 5.3e-57 226.1 484 38.4
Atru.chr8.2135 Acer truncatum HOM05D005357 ORTHO05D006354 2.0e-51 207.6 389 41.9
SEGI_31043 Sequoiadendron giganteum HOM05D005357 ORTHO05D006354 9.7e-51 205.3 155 61.3
SHI12776 Sapria himalayana HOM05D005357 ORTHO05D006354 2.9e-47 193.7 412 40.0
PGSC0003DMG400002411 Solanum tuberosum HOM05D005357 ORTHO05D006354 6.5e-47 192.6 393 38.2
DCAR_008325 Daucus carota HOM05D005357 ORTHO05D006354 2.7e-45 187.2 262 42.7
Solyc09g013120.4 Solanum lycopersicum HOM05D005357 ORTHO05D006354 1.5e-43 181.4 364 38.5
Atru.chr8.2134 Acer truncatum HOM05D005357 ORTHO05D006354 2.9e-39 167.2 108 76.9
Mapoly0068s0057 Marchantia polymorpha HOM05D005357 ORTHO05D006354 1.5e-35 154.8 160 48.8
ATR0605G041 Amborella trichopoda HOM05D005357 ORTHO05D006354 3.1e-33 147.1 363 34.4
Pp3c20_10060 Physcomitrium patens HOM05D005357 ORTHO05D006354 1.6e-32 144.8 192 42.2
Pp3c23_4130 Physcomitrium patens HOM05D005357 ORTHO05D006354 3.2e-30 137.1 259 35.5
Pp3c8_18230 Physcomitrium patens HOM05D005357 ORTHO05D006354 1.5e-27 128.3 261 34.1
SEGI_08495 Sequoiadendron giganteum HOM05D054687 ORTHO05D006354 1.1e-25 122.1 71 77.5
CBR_g24154 Chara braunii HOM05D005357 ORTHO05D006354 1.8e-25 121.3 108 48.1
PGSC0003DMG401020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 7.7e-24 115.9 85 69.4
Hma1.2p1_0125F.1_g058510 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 4.2e-22 110.2 355 30.1
Glyma.18G195800 Glycine max HOM05D005357 ORTHO05D006354 1.8e-20 104.8 198 45.5
Ah.02g124260 Amaranthus hybridus HOM05D000123 ORTHO05D000064 5.2e-20 103.2 91 63.7
CSS0030830 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 7.0e-17 92.8 68 69.1
Oeu055280.1 Olea europaea HOM05D005357 ORTHO05D006354 4.7e-13 80.1 211 37.0
Rhsim01G0256700 Rhododendron simsii HOM05D005357 ORTHO05D004574 5.2e-12 76.6 73 54.8
RcHm_v2.0_Chr3g0492291 Rosa chinensis HOM05D005357 ORTHO05D006354 5.9e-08 63.2 52 63.5


User provided reference genes

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