Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 1.2e-100 369.8 183 100.0
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 2.2e-65 252.7 179 72.1
AUR62024684 Chenopodium quinoa HOM05D003790 ORTHO05D004481 6.2e-44 181.4 181 56.9
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 4.0e-43 178.7 176 57.4
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 2.1e-39 166.4 174 53.4
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 2.7e-39 166.0 160 56.2
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 3.0e-38 162.5 159 56.6
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 1.1e-37 160.6 174 54.6
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 5.6e-37 158.3 187 49.2
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 5.6e-37 158.3 180 51.1
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 1.3e-36 157.1 180 51.1
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.6e-36 156.8 187 48.7
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 2.1e-36 156.4 168 52.4
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 4.8e-36 155.2 168 53.6
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 8.1e-36 154.5 187 49.2
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 1.1e-35 154.1 171 52.6
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 1.4e-35 153.7 176 50.6
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 1.8e-35 153.3 168 52.4
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 5.3e-35 151.8 167 52.1
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 6.9e-35 151.4 171 51.5
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 6.9e-35 151.4 191 50.8
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 6.9e-35 151.4 170 53.5
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 9.0e-35 151.0 173 52.6
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 1.2e-34 150.6 193 50.3
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.2e-34 150.6 171 51.5
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 1.5e-34 150.2 169 50.9
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 2.0e-34 149.8 173 52.0
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 3.4e-34 149.1 187 49.2
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 3.4e-34 149.1 179 49.7
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 5.8e-34 148.3 179 50.3
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 9.9e-34 147.5 172 51.2
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 1.3e-33 147.1 178 54.5
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 3.8e-33 145.6 177 52.0
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 3.8e-33 145.6 173 49.7
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 6.4e-33 144.8 177 53.7
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 6.4e-33 144.8 172 51.7
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 8.4e-33 144.4 176 52.3
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.1e-32 144.1 179 50.8
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 1.4e-32 143.7 171 52.6
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 1.9e-32 143.3 174 50.0
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 1.9e-32 143.3 175 51.4
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 1.9e-32 143.3 173 50.9
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 2.4e-32 142.9 172 54.1
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 2.4e-32 142.9 165 53.3
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 3.2e-32 142.5 189 47.1
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 3.2e-32 142.5 177 52.5
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 4.2e-32 142.1 172 48.8
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 4.2e-32 142.1 185 47.6
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 5.4e-32 141.7 173 52.6
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.6e-31 140.2 170 49.4
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 1.6e-31 140.2 205 46.3
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 2.7e-31 139.4 177 52.0
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 2.7e-31 139.4 177 52.0
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.5e-31 139.0 177 49.7
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 3.5e-31 139.0 170 50.6
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 3.5e-31 139.0 174 52.9
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 3.5e-31 139.0 173 49.1
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 4.6e-31 138.7 179 47.5
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 6.0e-31 138.3 166 50.0
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 6.0e-31 138.3 176 44.9
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 7.9e-31 137.9 180 49.4
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 1.0e-30 137.5 168 50.0
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 1.0e-30 137.5 178 46.6
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 1.3e-30 137.1 179 46.9
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 1.3e-30 137.1 190 45.8
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.8e-30 136.7 171 49.1
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 1.8e-30 136.7 182 46.7
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 1.8e-30 136.7 185 48.1
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 2.3e-30 136.3 173 48.0
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 3.9e-30 135.6 172 47.7
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 3.9e-30 135.6 170 48.2
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 3.9e-30 135.6 179 47.5
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 5.1e-30 135.2 173 50.9
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 6.7e-30 134.8 175 48.6
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 8.7e-30 134.4 167 49.7
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 8.7e-30 134.4 167 49.7
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 8.7e-30 134.4 167 49.7
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 8.7e-30 134.4 167 49.7
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 8.7e-30 134.4 194 43.3
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 8.7e-30 134.4 193 45.6
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 8.7e-30 134.4 185 47.6
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 1.1e-29 134.0 175 49.1
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.1e-29 134.0 185 49.7
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 1.5e-29 133.7 195 44.1
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.5e-29 133.7 195 44.1
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 1.5e-29 133.7 177 48.6
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 1.5e-29 133.7 170 46.5
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 1.9e-29 133.3 172 50.6
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 2.5e-29 132.9 182 47.8
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.3e-29 132.5 180 48.9
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 3.3e-29 132.5 175 48.6
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 5.6e-29 131.7 166 49.4
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 5.6e-29 131.7 170 48.2
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 5.6e-29 131.7 181 47.0
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 7.4e-29 131.3 192 43.8
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 1.3e-28 130.6 184 49.5
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 1.6e-28 130.2 170 44.1
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 1.6e-28 130.2 191 39.8
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 1.6e-28 130.2 173 50.3
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 2.8e-28 129.4 169 48.5
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.8e-28 129.4 180 47.2
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 2.8e-28 129.4 166 49.4
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 2.8e-28 129.4 172 50.0
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 4.8e-28 128.6 205 45.4
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 4.8e-28 128.6 164 45.1
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 4.8e-28 128.6 189 47.6
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 4.8e-28 128.6 179 45.3
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 6.2e-28 128.3 182 44.0
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 8.1e-28 127.9 168 48.8
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 1.8e-27 126.7 171 43.9
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 2.4e-27 126.3 164 45.7
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 3.1e-27 125.9 179 49.2
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 3.1e-27 125.9 168 48.2
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.3e-27 125.2 166 48.8
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 6.9e-27 124.8 177 42.9
Eucgr.H01062 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.2e-26 124.0 162 49.4
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 2.6e-26 122.9 191 43.5
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 4.5e-26 122.1 177 46.9
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 5.8e-26 121.7 163 45.4
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 1.7e-25 120.2 157 45.9
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.7e-25 120.2 177 45.2
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 2.2e-25 119.8 170 44.1
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.9e-25 119.4 172 45.9
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 6.4e-25 118.2 181 40.9
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 8.4e-25 117.9 167 44.9
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 1.1e-24 117.5 170 42.9
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.1e-24 117.5 164 49.4
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 1.9e-24 116.7 180 42.8
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 2.4e-24 116.3 192 41.1
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.4e-24 116.3 166 46.4
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 3.2e-24 115.9 181 40.9
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 4.2e-24 115.5 166 46.4
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 9.3e-24 114.4 170 42.4
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 9.3e-24 114.4 170 42.4
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 9.3e-24 114.4 170 42.4
TWI75G0985 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 4.6e-23 112.1 170 41.8
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 3.0e-22 109.4 171 41.5
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 8.7e-22 107.8 166 44.0
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 1.5e-21 107.1 179 40.8
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 1.9e-21 106.7 166 44.0
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 9.6e-21 104.4 188 40.4
MD11G1317200 Malus domestica HOM05D003790 ORTHO05D004481 1.6e-20 103.6 211 38.9
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 4.8e-20 102.1 181 41.4
Thecc.01G102100 Theobroma cacao HOM05D003790 ORTHO05D004481 3.1e-19 99.4 170 41.8
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.0e-19 99.0 178 40.4
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 6.9e-19 98.2 152 43.4
Eucgr.L01711 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.0e-18 96.7 136 45.6
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.8e-17 92.4 165 38.2
Duzib264G0610 Durio zibethinus HOM05D003790 ORTHO05D004481 1.9e-16 90.1 160 39.4
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 2.5e-16 89.7 182 35.2
Zm00001eb014210 Zea mays HOM05D003790 ORTHO05D004481 4.2e-16 89.0 191 38.7
Actinidia21418 Actinidia chinensis HOM05D003790 ORTHO05D004481 5.5e-16 88.6 136 41.9
Gohir.D12G130100 Gossypium hirsutum HOM05D003790 ORTHO05D004481 7.1e-16 88.2 140 42.9
Os03g0302800 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 1.6e-15 87.0 185 38.4
Sc17g0000580 Simmondsia chinensis HOM05D003790 ORTHO05D004481 2.1e-15 86.7 177 35.0
SGA_v2.0_scaffold334G49053 Striga asiatica HOM05D003790 ORTHO05D004481 2.3e-14 83.2 118 43.2
CARHR250350 Cardamine hirsuta HOM05D003790 ORTHO05D004481 2.5e-13 79.7 121 47.9
COL.COLO4_09960 Corchorus olitorius HOM05D003790 ORTHO05D004481 4.3e-13 79.0 163 39.9
Duzib147G1191 Durio zibethinus HOM05D003790 ORTHO05D004481 1.3e-12 77.4 162 36.4
Thhalv10029363m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 2.8e-12 76.3 139 40.3
Nn6g33912 Nelumbo nucifera HOM05D003790 ORTHO05D004481 3.7e-12 75.9 89 51.7
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 8.2e-12 74.7 132 40.2
Eucgr.K03525 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.5e-10 70.5 163 37.4
Eucgr.L00541 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.0e-10 70.1 97 45.4
Zm00001eb396420 Zea mays HOM05D003790 ORTHO05D004481 5.9e-10 68.6 190 35.3
ATR0706G232 Amborella trichopoda HOM05D003790 ORTHO05D004481 1.0e-09 67.8 158 33.5
MD03G1297400 Malus domestica HOM05D003790 ORTHO05D004481 1.0e-09 67.8 207 30.9
Eucgr.E02488 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.2e-09 66.6 105 41.0
Eucgr.F04057 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.8e-09 65.9 100 43.0
HPP92_011875 Vanilla planifolia HOM05D003790 ORTHO05D004481 7.2e-08 61.6 177 31.1
Eucgr.F04083 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.7e-07 59.7 97 41.2
Eucgr.A02768 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.4e-06 57.4 105 40.0
Nn2g14986 Nelumbo nucifera HOM05D003790 ORTHO05D004481 3.0e-06 56.2 49 53.1
Eucgr.H01752 Eucalyptus grandis HOM05D003790 ORTHO05D004481 8.8e-06 54.7 58 53.4


User provided reference genes

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