Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g049040 Amaranthus hybridus HOM05D009154 ORTHO05D004310 3.0e-120 435.3 231 100.0
AUR62011764 Chenopodium quinoa HOM05D009154 ORTHO05D004310 8.3e-70 267.7 249 60.6
AUR62024610 Chenopodium quinoa HOM05D009154 ORTHO05D004310 7.5e-63 244.6 254 57.1
EL10As5g23572 Beta vulgaris HOM05D009154 ORTHO05D004310 6.6e-59 231.5 247 55.5
Hund16457 Selenicereus undatus HOM05D009154 ORTHO05D004310 5.4e-45 185.3 236 48.7
Lj1C14T15 Lonicera japonica HOM05D009154 ORTHO05D004310 5.1e-27 125.6 229 38.9
Aqoxy5G02697 Aquilegia oxysepala HOM05D009154 ORTHO05D004310 6.9e-24 115.2 255 39.2
Prupe.3G008100 Prunus persica HOM05D018099 ORTHO05D020712 9.9e-23 111.3 217 35.9
QL12p018988 Quercus lobata HOM05D009154 ORTHO05D004310 4.9e-22 109.0 237 37.1
Sed0013714 Sechium edule HOM05D009154 ORTHO05D004310 8.4e-22 108.2 219 39.7
CsaV3_3G026560 Cucumis sativus L. HOM05D009154 ORTHO05D004310 4.2e-21 105.9 229 35.4
ClCG10G011600 Citrullus lanatus HOM05D009154 ORTHO05D004310 1.2e-20 104.4 230 35.2
MELO3C012929.2 Cucumis melo HOM05D009154 ORTHO05D004310 1.2e-20 104.4 229 37.1
Manes.05G013000 Manihot esculenta HOM05D009154 ORTHO05D004310 4.6e-20 102.4 229 35.8
ClCG09G004940 Citrullus lanatus HOM05D009154 ORTHO05D004310 5.1e-19 99.0 232 34.1
Sed0019931 Sechium edule HOM05D009154 ORTHO05D004310 1.1e-18 97.8 205 38.0
MELO3C015909.2 Cucumis melo HOM05D009154 ORTHO05D004310 1.6e-17 94.0 217 35.5
HanXRQChr04g0108411 Helianthus annuus HOM05D009154 ORTHO05D004310 2.1e-17 93.6 128 46.9
ECA236G0385 Erigeron canadensis HOM05D009154 ORTHO05D004310 3.7e-17 92.8 188 38.3
Medtr1g086670 Medicago truncatula HOM05D012173 ORTHO05D004310 1.1e-16 91.3 227 34.4
Lalb_Chr02g0146911 Lupinus albus HOM05D012173 ORTHO05D004310 6.9e-16 88.6 223 36.8
TPR.G33868 Trifolium pratense HOM05D007634 ORTHO05D004310 2.0e-15 87.0 153 39.9
Sc17g0000300 Simmondsia chinensis HOM05D009814 ORTHO05D004310 2.6e-15 86.7 251 31.5
Sed0022617 Sechium edule HOM05D009154 ORTHO05D004310 7.6e-15 85.1 233 32.2
DCAR_005743 Daucus carota HOM05D009154 ORTHO05D004310 1.0e-14 84.7 153 39.2
HanXRQChr08g0232271 Helianthus annuus HOM05D009154 ORTHO05D004310 1.7e-14 84.0 197 35.0
Sabra14G0087500 Salix brachista HOM05D009154 ORTHO05D004310 1.4e-13 80.9 269 29.7
Lsat_1_v5_gn_8_88920 Lactuca sativa HOM05D009154 ORTHO05D004310 1.2e-12 77.8 137 40.9
ECA247G1084 Erigeron canadensis HOM05D009154 ORTHO05D004310 3.5e-12 76.3 151 35.1
GSVIVG01031256001 Vitis vinifera HOM05D007634 ORTHO05D004310 3.5e-12 76.3 245 33.5
Oeu038954.2 Olea europaea HOM05D016587 ORTHO05D004310 6.0e-12 75.5 221 30.3
CANSAT54G0035 Cannabis sativa HOM05D009154 ORTHO05D014149 1.8e-11 73.9 115 42.6
CsaV3_7G030120 Cucumis sativus L. HOM05D009154 ORTHO05D004310 3.0e-11 73.2 222 32.0
MSTRG.5144 Avicennia marina HOM05D020384 ORTHO05D004310 1.1e-10 71.2 170 30.6
Atru.chr2.269 Acer truncatum HOM05D013055 ORTHO05D004310 2.5e-10 70.1 172 34.3
PGR044G0657 Punica granatum HOM05D009154 ORTHO05D004310 4.3e-10 69.3 211 31.8
Psat6g160360 Pisum sativum HOM05D012173 ORTHO05D004310 9.7e-10 68.2 220 32.7
ECA233G3364 Erigeron canadensis HOM05D009154 ORTHO05D004310 4.8e-09 65.9 82 48.8
CARHR001700 Cardamine hirsuta HOM05D009037 ORTHO05D011187 8.2e-09 65.1 117 41.0
Eucgr.K03556 Eucalyptus grandis HOM05D009154 ORTHO05D004310 1.4e-08 64.3 226 31.9
CSS0049163 Camellia sinensis var. sinensis HOM05D007634 ORTHO05D004310 2.4e-08 63.5 78 50.0
MD09G1285700 Malus domestica HOM05D018099 ORTHO05D020712 3.1e-08 63.2 212 27.4
DCAR_026994 Daucus carota HOM05D007634 ORTHO05D004310 9.0e-08 61.6 237 31.2
FAN09G2530 Fragaria x ananassa HOM05D018542 ORTHO05D014149 1.5e-07 60.8 84 40.5
TWI18G0583 Tripterygium wilfordii HOM05D009814 ORTHO05D004310 1.5e-07 60.8 214 29.0
DCAR_030455 Daucus carota HOM05D009154 ORTHO05D004310 2.0e-07 60.5 92 43.5
CiPaw.02G072900 Carya illinoinensis HOM05D007634 ORTHO05D004310 2.6e-07 60.1 86 45.3
Dinv10123 Davidia involucrata HOM05D009814 ORTHO05D004310 5.9e-07 58.9 239 26.8
Lj3A834G63 Lonicera japonica HOM05D007634 ORTHO05D004310 7.7e-07 58.5 208 30.3
Hma1.2p1_0408F.1_g146500 Hydrangea macrophylla HOM05D009814 ORTHO05D004310 1.0e-06 58.2 183 26.8
Lalb_Chr06g0166981 Lupinus albus HOM05D012173 ORTHO05D004310 1.0e-06 58.2 222 28.8
A10p01150 Brassica napus HOM05D009037 ORTHO05D011187 1.3e-06 57.8 109 38.5
VMungo0720G2010 Vigna mungo HOM05D012173 ORTHO05D004310 1.3e-06 57.8 105 38.1
arahy.Tifrunner.gnm1.ann1.DQ3PTC Arachis hypogaea HOM05D012173 ORTHO05D004310 1.7e-06 57.4 210 29.5
Sed0003021 Sechium edule HOM05D009154 ORTHO05D004310 1.7e-06 57.4 226 28.8
COL.COLO4_23198 Corchorus olitorius HOM05D009814 ORTHO05D004310 2.2e-06 57.0 223 29.1
DCAR_002881 Daucus carota HOM05D009154 ORTHO05D004310 2.2e-06 57.0 72 38.9
Hma1.2p1_1400F.1_g280910 Hydrangea macrophylla HOM05D007634 ORTHO05D004310 2.9e-06 56.6 226 29.2
CSS0041924 Camellia sinensis var. sinensis HOM05D015885 ORTHO05D012930 3.8e-06 56.2 170 30.6
Lj6A693T64 Lonicera japonica HOM05D007634 ORTHO05D004310 3.8e-06 56.2 230 30.9
Sc13g0007130 Simmondsia chinensis HOM05D007634 ORTHO05D004310 3.8e-06 56.2 253 28.9
Prupe.1G113900 Prunus persica HOM05D007634 ORTHO05D004310 5.0e-06 55.8 87 41.4
FvH4_4g20190 Fragaria vesca HOM05D007634 ORTHO05D004310 6.5e-06 55.5 78 43.6
FAN12G0129 Fragaria x ananassa HOM05D007634 ORTHO05D004310 6.5e-06 55.5 78 43.6
RcHm_v2.0_Chr3g0487151 Rosa chinensis HOM05D018099 ORTHO05D020712 8.5e-06 55.1 131 32.8
SalBow5G2792 Salvia bowleyana HOM05D017048 ORTHO05D018530 8.5e-06 55.1 105 34.3
TAR362G0031 Trochodendron aralioides HOM05D007634 ORTHO05D004310 8.5e-06 55.1 250 28.0


User provided reference genes

Program Settings