Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g048970 Amaranthus hybridus HOM05D004983 ORTHO05D005847 1.9e-162 575.9 309 100.0
EL10Ac5g10876 Beta vulgaris HOM05D004983 ORTHO05D005847 4.8e-105 385.2 323 68.4
AUR62008315 Chenopodium quinoa HOM05D004983 ORTHO05D005847 4.8e-105 385.2 317 68.5
Ah.02g112900 Amaranthus hybridus HOM05D004983 ORTHO05D005847 2.4e-104 382.9 241 82.2
Ah.02g112940 Amaranthus hybridus HOM05D004983 ORTHO05D005847 1.0e-99 367.5 315 67.6
AUR62021780 Chenopodium quinoa HOM05D004983 ORTHO05D005847 9.0e-96 354.4 237 77.2
Hund04599 Selenicereus undatus HOM05D004983 ORTHO05D005847 3.3e-90 335.9 322 59.6
Sc12g0005910 Simmondsia chinensis HOM05D004983 ORTHO05D005847 2.7e-84 316.2 299 57.5
Potri.012G072800 Populus trichocarpa HOM05D004983 ORTHO05D005847 1.8e-83 313.5 265 63.0
Sabra12G0052000 Salix brachista HOM05D004983 ORTHO05D005847 1.3e-81 307.4 271 60.9
PGR044G0258 Punica granatum HOM05D004983 ORTHO05D005847 2.8e-81 306.2 264 62.5
Oeu022186.1 Olea europaea HOM05D004983 ORTHO05D005847 3.7e-81 305.8 273 60.1
GSVIVG01008095001 Vitis vinifera HOM05D004983 ORTHO05D005847 1.8e-80 303.5 239 63.6
MD06G1184000 Malus domestica HOM05D004983 ORTHO05D005847 5.3e-80 302.0 289 59.2
Lsat_1_v5_gn_1_11380 Lactuca sativa HOM05D004983 ORTHO05D005847 9.1e-80 301.2 281 56.6
Cc04_g16050 Coffea canephora HOM05D004983 ORTHO05D005847 2.6e-79 299.7 241 63.5
Ciclev10021875m.g Citrus clementina HOM05D004983 ORTHO05D005847 4.5e-79 298.9 246 62.6
FAN04G0333 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.0e-78 297.7 281 58.0
CANSAT80G1912 Cannabis sativa HOM05D004983 ORTHO05D005847 1.3e-78 297.4 281 58.4
Hma1.2p1_0572F.1_g181120 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 1.3e-78 297.4 248 63.7
FvH4_5g15990 Fragaria vesca HOM05D004983 ORTHO05D005847 2.2e-78 296.6 247 64.0
Prupe.5G182700 Prunus persica HOM05D004983 ORTHO05D005847 2.2e-78 296.6 289 58.5
CsaV3_1G001940 Cucumis sativus L. HOM05D004983 ORTHO05D005847 8.5e-78 294.7 262 61.5
QL10p014085 Quercus lobata HOM05D004983 ORTHO05D005847 1.4e-77 293.9 269 58.4
Eucgr.B00384 Eucalyptus grandis HOM05D004983 ORTHO05D005847 2.5e-77 293.1 284 58.1
VMungo1309G2496 Vigna mungo HOM05D004983 ORTHO05D005847 3.2e-77 292.7 248 61.7
FAN18G0171 Fragaria x ananassa HOM05D004983 ORTHO05D005847 4.2e-77 292.4 245 63.7
TAR374G1152 Trochodendron aralioides HOM05D000005 ORTHO05D000012 4.2e-77 292.4 286 57.3
RcHm_v2.0_Chr7g0180081 Rosa chinensis HOM05D004983 ORTHO05D005847 5.5e-77 292.0 249 62.7
Gohir.D10G187500 Gossypium hirsutum HOM05D004983 ORTHO05D005847 9.4e-77 291.2 239 62.3
Manes.06G098600 Manihot esculenta HOM05D004983 ORTHO05D005847 1.2e-76 290.8 281 57.7
AUR62021779 Chenopodium quinoa HOM05D004983 ORTHO05D005847 1.6e-76 290.4 224 69.6
Atru.chr9.2363 Acer truncatum HOM05D004983 ORTHO05D005847 3.6e-76 289.3 246 62.2
FAN13G0935 Fragaria x ananassa HOM05D004983 ORTHO05D005847 3.6e-76 289.3 245 62.9
Haze_07411 Corylus avellana HOM05D004983 ORTHO05D005847 4.7e-76 288.9 262 58.8
CiPaw.12G021900 Carya illinoinensis HOM05D004983 ORTHO05D005847 6.1e-76 288.5 265 59.6
Aa31LG3G14620 Aethionema arabicum HOM05D004983 ORTHO05D005847 7.9e-76 288.1 249 62.2
Medtr0168s0080 Medicago truncatula HOM05D004983 ORTHO05D005847 1.0e-75 287.7 248 63.3
C09p64060 Brassica napus HOM05D004983 ORTHO05D005847 1.4e-75 287.3 255 61.6
BolC9t59243H Brassica oleracea HOM05D004983 ORTHO05D005847 3.0e-75 286.2 255 61.6
HanXRQChr02g0045351 Helianthus annuus HOM05D004983 ORTHO05D005847 3.0e-75 286.2 281 56.6
PSO591G0429 Papaver somniferum HOM05D004983 ORTHO05D005847 3.0e-75 286.2 235 63.8
Dinv13111 Davidia involucrata HOM05D004983 ORTHO05D005847 3.9e-75 285.8 280 57.1
Thhalv10014312m.g Eutrema salsugineum HOM05D004983 ORTHO05D005847 3.9e-75 285.8 271 59.0
Sp6g30930 Schrenkiella parvula HOM05D004983 ORTHO05D005847 3.9e-75 285.8 256 59.4
BraA10t44577Z Brassica rapa HOM05D004983 ORTHO05D005847 6.7e-75 285.0 255 61.2
Carub.0006s1121 Capsella rubella HOM05D004983 ORTHO05D005847 6.7e-75 285.0 254 61.4
TPR.G37260 Trifolium pratense HOM05D004983 ORTHO05D005847 8.8e-75 284.6 247 61.9
A10p25150 Brassica napus HOM05D004983 ORTHO05D005847 1.1e-74 284.3 255 62.0
Dinv19894 Davidia involucrata HOM05D004983 ORTHO05D005847 1.5e-74 283.9 274 57.7
Glyma.06G188000 Glycine max HOM05D004983 ORTHO05D005847 2.6e-74 283.1 244 61.1
Lalb_Chr08g0236081 Lupinus albus HOM05D004983 ORTHO05D005847 2.6e-74 283.1 252 60.3
COL.COLO4_20718 Corchorus olitorius HOM05D004983 ORTHO05D005847 7.4e-74 281.6 246 61.0
Nitab4.5_0008162g0040 Nicotiana tabacum HOM05D004983 ORTHO05D005847 7.4e-74 281.6 251 58.6
AL6G23630 Arabidopsis lyrata HOM05D004983 ORTHO05D005847 9.7e-74 281.2 238 61.8
CAN.G999.9 Capsicum annuum HOM05D004983 ORTHO05D005847 1.3e-73 280.8 228 63.6
Migut.I00071 Erythranthe guttata HOM05D004983 ORTHO05D005847 1.7e-73 280.4 266 56.0
AT5G13050 Arabidopsis thaliana HOM05D004983 ORTHO05D005847 2.2e-73 280.0 256 59.4
BolC2t06531H Brassica oleracea HOM05D004983 ORTHO05D005847 2.8e-73 279.6 246 59.8
Nitab4.5_0000026g0320 Nicotiana tabacum HOM05D004983 ORTHO05D005847 2.8e-73 279.6 277 54.9
Thecc.K0001100 Theobroma cacao HOM05D004983 ORTHO05D005847 2.8e-73 279.6 231 64.5
arahy.Tifrunner.gnm1.ann1.TQ2Z41 Arachis hypogaea HOM05D004983 ORTHO05D005847 3.7e-73 279.3 240 62.1
SGA_v2.0_scaffold25G10860 Striga asiatica HOM05D004983 ORTHO05D005847 3.7e-73 279.3 260 59.2
CARHR200420 Cardamine hirsuta HOM05D004983 ORTHO05D005847 8.2e-73 278.1 238 62.2
arahy.Tifrunner.gnm1.ann1.GD66SW Arachis hypogaea HOM05D004983 ORTHO05D005847 1.1e-72 277.7 260 59.6
A02p01650 Brassica napus HOM05D001227 ORTHO05D001082 1.1e-72 277.7 242 60.7
BraA02t05144Z Brassica rapa HOM05D001227 ORTHO05D001082 1.4e-72 277.3 248 58.9
DCAR_016523 Daucus carota HOM05D004983 ORTHO05D005847 1.4e-72 277.3 294 52.7
vmacro19336 Vaccinium macrocarpon HOM05D004983 ORTHO05D005847 1.4e-72 277.3 313 51.1
Actinidia04943 Actinidia chinensis HOM05D004983 ORTHO05D005847 1.8e-72 276.9 267 56.2
Aqoxy3G00847 Aquilegia oxysepala HOM05D004983 ORTHO05D005847 1.8e-72 276.9 238 60.9
Glyma.04G177000 Glycine max HOM05D004983 ORTHO05D005847 3.1e-72 276.2 248 59.7
BcaNung01856 Brassica carinata HOM05D001227 ORTHO05D001082 4.1e-72 275.8 242 60.3
C02p05860 Brassica napus HOM05D001227 ORTHO05D001082 4.1e-72 275.8 242 60.3
Phvul.009G183500 Phaseolus vulgaris HOM05D004983 ORTHO05D005847 7.0e-72 275.0 243 60.5
Rhsim08G0163200 Rhododendron simsii HOM05D004983 ORTHO05D005847 7.0e-72 275.0 295 52.2
Solyc03g113590.3 Solanum lycopersicum HOM05D004983 ORTHO05D005847 7.0e-72 275.0 241 59.8
Sopen03g032630 Solanum pennellii HOM05D004983 ORTHO05D005847 9.1e-72 274.6 241 59.3
Duzib205G0093 Durio zibethinus HOM05D004983 ORTHO05D005847 2.6e-71 273.1 230 61.3
CSS0013980 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 3.5e-71 272.7 276 55.1
PGSC0003DMG400024570 Solanum tuberosum HOM05D004983 ORTHO05D005847 5.9e-71 271.9 239 59.0
BcaNung01178 Brassica carinata HOM05D004983 ORTHO05D005847 7.7e-71 271.6 260 56.9
QL03p067716 Quercus lobata HOM05D004983 ORTHO05D005847 1.7e-70 270.4 279 54.8
MELO3C017137.2 Cucumis melo HOM05D004983 ORTHO05D005847 3.8e-70 269.2 255 58.8
QL03p067725 Quercus lobata HOM05D004983 ORTHO05D005847 2.5e-69 266.5 280 53.6
ECA247G1770 Erigeron canadensis HOM05D004983 ORTHO05D005847 3.2e-69 266.2 318 48.1
Nn4g22978 Nelumbo nucifera HOM05D004983 ORTHO05D005847 4.2e-69 265.8 259 57.1
ATR0665G657 Amborella trichopoda HOM05D004983 ORTHO05D005847 8.0e-68 261.5 254 56.3
TPR.G19166 Trifolium pratense HOM05D004983 ORTHO05D005847 1.0e-67 261.2 225 62.7
Gohir.D12G050100 Gossypium hirsutum HOM05D004983 ORTHO05D005847 2.3e-67 260.0 268 53.7
TWI75G1117 Tripterygium wilfordii HOM05D004983 ORTHO05D005847 3.0e-67 259.6 275 53.1
Gohir.A12G051800 Gossypium hirsutum HOM05D004983 ORTHO05D005847 2.0e-66 256.9 260 55.8
Gorai.008G053300 Gossypium raimondii HOM05D004983 ORTHO05D005847 2.0e-66 256.9 260 55.4
Lj1g0016910 Lotus japonicus HOM05D004983 ORTHO05D005847 2.0e-66 256.9 202 66.8
Haze_12108 Corylus avellana HOM05D004983 ORTHO05D005847 2.6e-66 256.5 263 53.2
Ciclev10032272m.g Citrus clementina HOM05D004983 ORTHO05D005847 3.3e-66 256.1 266 52.3
CDE07G0592 Ceratophyllum demersum HOM05D004983 ORTHO05D005847 7.5e-66 255.0 263 56.3
Zm00001eb107660 Zea mays HOM05D004983 ORTHO05D005847 9.7e-66 254.6 240 55.8
Peaxi162Scf00017g02122 Petunia axillaris HOM05D004983 ORTHO05D005847 1.1e-64 251.1 246 55.7
HPP92_026476 Vanilla planifolia HOM05D004983 ORTHO05D005847 1.4e-64 250.8 258 52.7
Thecc.02G237100 Theobroma cacao HOM05D004983 ORTHO05D005847 1.8e-64 250.4 265 53.6
CiPaw.05G143400 Carya illinoinensis HOM05D004983 ORTHO05D005847 4.1e-64 249.2 226 58.0
HPP92_014218 Vanilla planifolia HOM05D004983 ORTHO05D005847 2.0e-63 246.9 272 51.5
Peaxi162Scf00496g00013 Petunia axillaris HOM05D004983 ORTHO05D005847 2.7e-63 246.5 213 60.1
arahy.Tifrunner.gnm1.ann1.G2IRY3 Arachis hypogaea HOM05D004983 ORTHO05D005847 7.7e-63 245.0 282 51.1
Prupe.1G263300 Prunus persica HOM05D004983 ORTHO05D005847 3.8e-62 242.7 279 48.7
arahy.Tifrunner.gnm1.ann1.N4VW2L Arachis hypogaea HOM05D004983 ORTHO05D005847 5.0e-62 242.3 291 50.2
Os07g0578600 Oryza sativa ssp. japonica HOM05D004983 ORTHO05D005847 5.0e-62 242.3 234 53.8
unitig_27.g25109 Utricularia gibba HOM05D000870 ORTHO05D005847 1.5e-61 240.7 195 62.1
Atru.chr11.1914 Acer truncatum HOM05D004983 ORTHO05D005847 4.2e-61 239.2 246 52.8
Gorai.011G210300 Gossypium raimondii HOM05D004983 ORTHO05D005847 6.1e-60 235.3 238 53.8
FvH4_4g35410 Fragaria vesca HOM05D004983 ORTHO05D005847 5.2e-59 232.3 291 45.7
RcHm_v2.0_Chr4g0445021 Rosa chinensis HOM05D004983 ORTHO05D005847 6.8e-59 231.9 249 50.6
Nitab4.5_0002376g0010 Nicotiana tabacum HOM05D004983 ORTHO05D005847 6.3e-57 225.3 293 45.4
FAN07G1154 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.1e-56 224.6 313 44.1
SMO271G0141 Selaginella moellendorffii HOM05D004983 ORTHO05D005847 1.2e-55 221.1 228 52.6
SalBow5G1630 Salvia bowleyana HOM05D004983 ORTHO05D005847 1.5e-53 214.2 253 51.0
AagrBONN_evm.TU.Sc2ySwM_362.273 Anthoceros agrestis HOM05D004983 ORTHO05D005847 3.6e-52 209.5 238 51.3
Nn4g24106 Nelumbo nucifera HOM05D004983 ORTHO05D005847 8.0e-52 208.4 231 52.4
Psat5g181720 Pisum sativum HOM05D004983 ORTHO05D005847 1.5e-50 204.1 145 73.1
Mapoly0019s0150 Marchantia polymorpha HOM05D004983 ORTHO05D005847 5.7e-50 202.2 232 48.3
FAN22G0524 Fragaria x ananassa HOM05D004983 ORTHO05D005847 7.5e-50 201.8 260 46.2
FAN12G3769 Fragaria x ananassa HOM05D004983 ORTHO05D005847 9.8e-50 201.4 330 40.0
CSS0025366 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 2.2e-49 200.3 161 62.7
MD16G1082800 Malus domestica HOM05D004983 ORTHO05D005847 2.8e-49 199.9 218 50.0
Sed0011699 Sechium edule HOM05D004983 ORTHO05D005847 8.3e-49 198.4 214 54.7
Duzib251G0645 Durio zibethinus HOM05D004983 ORTHO05D005847 2.4e-48 196.8 239 48.5
Lj9A456T34 Lonicera japonica HOM05D004983 ORTHO05D005847 5.9e-47 192.2 144 66.7
Cpa.g.sc203.7 Carica papaya HOM05D004983 ORTHO05D005847 2.3e-46 190.3 274 43.8
Gohir.A10G180700 Gossypium hirsutum HOM05D004983 ORTHO05D005847 2.9e-46 189.9 146 65.8
Nitab4.5_0000642g0190 Nicotiana tabacum HOM05D004983 ORTHO05D005847 6.1e-44 182.2 236 47.5
Dinv31146 Davidia involucrata HOM05D004983 ORTHO05D005847 8.0e-44 181.8 151 62.3
Atru.chr11.1910 Acer truncatum HOM05D004983 ORTHO05D005847 1.8e-40 170.6 154 57.1
SEGI_36548 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 4.6e-39 166.0 138 59.4
Nitab4.5_0000710g0080 Nicotiana tabacum HOM05D004983 ORTHO05D005847 5.9e-39 165.6 155 56.8
CBR_g34194 Chara braunii HOM05D004983 ORTHO05D005847 4.3e-37 159.5 255 39.6
Nitab4.5_0009486g0020 Nicotiana tabacum HOM05D004983 ORTHO05D005847 2.2e-33 147.1 159 50.9
Pp3c3_32060 Physcomitrium patens HOM05D004983 ORTHO05D005847 1.2e-31 141.4 174 43.7
Hma1.2p1_4120F.1_g338320 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 1.6e-28 131.0 82 73.2
GSVIVG01020126001 Vitis vinifera HOM05D004983 ORTHO05D005847 1.8e-27 127.5 113 57.5
Pp3c12_22470 Physcomitrium patens HOM05D004983 ORTHO05D005847 2.3e-27 127.1 167 42.5
Cre09.g403293 Chlamydomonas reinhardtii HOM05D004983 ORTHO05D005847 5.2e-27 125.9 224 37.5
SEGI_02343 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 5.6e-21 105.9 83 61.4
ClCG06G016570 Citrullus lanatus HOM05D004983 ORTHO05D005847 2.8e-20 103.6 133 44.4
FAN17G3002 Fragaria x ananassa HOM05D004983 ORTHO05D005847 4.7e-20 102.8 176 40.9
Psat0s864g0040 Pisum sativum HOM05D004983 ORTHO05D005847 5.2e-19 99.4 95 55.8
Atru.chr11.1911 Acer truncatum HOM05D004983 ORTHO05D005847 2.0e-18 97.4 111 49.5
MCO01G728 Micromonas commoda HOM05D004983 ORTHO05D005847 1.3e-17 94.7 245 31.4
PRCOL_00002663 Prasinoderma coloniale HOM05D004983 ORTHO05D005847 9.2e-16 88.6 246 30.9
Nitab4.5_0000710g0100 Nicotiana tabacum HOM05D004983 ORTHO05D005847 2.6e-10 70.5 89 44.9


User provided reference genes

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