Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g048730 Amaranthus hybridus HOM05D006304 ORTHO05D008584 0.0e+00 1797.3 904 100.0
AUR62021733 Chenopodium quinoa HOM05D006304 ORTHO05D008584 0.0e+00 1083.9 945 64.3
EL10Ac5g10949 Beta vulgaris HOM05D006304 ORTHO05D008584 4.1e-306 1054.7 937 62.2
AUR62008366 Chenopodium quinoa HOM05D006304 ORTHO05D008584 4.1e-306 1054.7 940 63.2
Hund09367 Selenicereus undatus HOM05D006304 ORTHO05D008584 2.8e-254 882.5 953 55.7
Sc10g0009990 Simmondsia chinensis HOM05D006304 ORTHO05D008584 4.1e-197 692.6 941 48.4
Rhsim12G0159100 Rhododendron simsii HOM05D006304 ORTHO05D008584 3.0e-171 606.7 943 45.2
Actinidia34979 Actinidia chinensis HOM05D006304 ORTHO05D008584 4.3e-170 602.8 969 44.3
Cfa018983 Carpinus fangiana HOM05D006304 ORTHO05D008584 1.6e-169 600.9 953 44.8
MD14G1195600 Malus domestica HOM05D006304 ORTHO05D008584 2.0e-164 583.9 931 43.7
TAR371G0034 Trochodendron aralioides HOM05D006304 ORTHO05D008584 7.8e-164 582.0 999 42.5
vmacro16566 Vaccinium macrocarpon HOM05D006304 ORTHO05D008584 2.3e-163 580.5 1000 42.6
GSVIVG01008051001 Vitis vinifera HOM05D006304 ORTHO05D008584 5.6e-162 575.9 933 42.2
TAR629G0077 Trochodendron aralioides HOM05D006304 ORTHO05D008584 9.5e-162 575.1 1071 41.5
Dinv38671 Davidia involucrata HOM05D006304 ORTHO05D008584 2.6e-159 567.0 944 43.0
CsaV3_1G007890 Cucumis sativus L. HOM05D006304 ORTHO05D008584 1.2e-156 558.1 928 41.7
MELO3C002204.2 Cucumis melo HOM05D006304 ORTHO05D008584 1.7e-155 554.3 931 41.9
Phvul.003G192300 Phaseolus vulgaris HOM05D006304 ORTHO05D008584 1.7e-155 554.3 564 56.7
MD06G1188800 Malus domestica HOM05D006304 ORTHO05D008584 2.3e-155 553.9 934 43.3
Prupe.5G187100 Prunus persica HOM05D006304 ORTHO05D008584 2.3e-155 553.9 554 57.8
RcHm_v2.0_Chr7g0180671 Rosa chinensis HOM05D006304 ORTHO05D008584 8.6e-155 552.0 925 42.5
arahy.Tifrunner.gnm1.ann1.E16Z9R Arachis hypogaea HOM05D006304 ORTHO05D008584 2.5e-154 550.4 585 54.9
VMungo1215G2961 Vigna mungo HOM05D006304 ORTHO05D008584 7.3e-154 548.9 654 52.3
Nn3g17140 Nelumbo nucifera HOM05D006304 ORTHO05D008584 3.6e-153 546.6 1075 39.4
Oeu048746.1 Olea europaea HOM05D006304 ORTHO05D008584 2.3e-152 543.9 933 40.9
Glyma.05G029400 Glycine max HOM05D006304 ORTHO05D008584 3.1e-152 543.5 510 59.4
Glyma.17G097500 Glycine max HOM05D006304 ORTHO05D008584 8.9e-152 542.0 420 66.4
FvH4_5g15410 Fragaria vesca HOM05D006304 ORTHO05D008584 2.0e-151 540.8 929 42.1
Actinidia19056 Actinidia chinensis HOM05D006304 ORTHO05D008584 2.6e-151 540.4 975 42.1
CiPaw.11G039300 Carya illinoinensis HOM05D006304 ORTHO05D008584 2.2e-150 537.3 810 45.8
Lj4g0004911 Lotus japonicus HOM05D006304 ORTHO05D008584 3.8e-150 536.6 614 52.3
CANSAT80G1066 Cannabis sativa HOM05D006304 ORTHO05D008584 8.4e-150 535.4 911 43.6
Haze_07372 Corylus avellana HOM05D006304 ORTHO05D008584 8.4e-150 535.4 950 42.0
Lj5A115T69 Lonicera japonica HOM05D006304 ORTHO05D008584 2.1e-148 530.8 1029 40.1
Cpa.g.sc17.206 Carica papaya HOM05D006304 ORTHO05D008584 1.3e-147 528.1 565 55.2
Ciclev10019215m.g Citrus clementina HOM05D006304 ORTHO05D008584 7.3e-146 522.3 910 41.3
Medtr4g107890 Medicago truncatula HOM05D006304 ORTHO05D008584 2.1e-145 520.8 531 57.1
Cc04_g15450 Coffea canephora HOM05D006304 ORTHO05D008584 8.1e-145 518.8 538 57.1
Sed0028137 Sechium edule HOM05D006304 ORTHO05D008584 1.1e-144 518.5 923 41.9
Ca_21844_v3 Cicer arietinum L. HOM05D006304 ORTHO05D008584 1.8e-144 517.7 527 57.9
Gohir.D12G178452 Gossypium hirsutum HOM05D006304 ORTHO05D008584 4.4e-143 513.1 408 66.4
Psat4g053720 Pisum sativum HOM05D006304 ORTHO05D008584 4.4e-143 513.1 511 58.1
TPR.G38415 Trifolium pratense HOM05D006304 ORTHO05D008584 9.9e-143 511.9 536 55.8
Sopen06g027340 Solanum pennellii HOM05D006304 ORTHO05D008584 8.4e-142 508.8 938 42.0
Nitab4.5_0000269g0180 Nicotiana tabacum HOM05D006304 ORTHO05D008584 1.1e-141 508.4 939 41.7
Duzib205G0644 Durio zibethinus HOM05D006304 ORTHO05D008584 2.4e-141 507.3 573 52.7
arahy.Tifrunner.gnm1.ann1.YQHF2A Arachis hypogaea HOM05D006304 ORTHO05D008584 1.2e-140 505.0 668 48.4
Gorai.008G191000 Gossypium raimondii HOM05D006304 ORTHO05D008584 1.6e-140 504.6 551 55.5
MBI12_g19403_MAGBIO Magnolia biondii HOM05D006304 ORTHO05D008584 2.1e-140 504.2 1078 37.7
Migut.I00131 Erythranthe guttata HOM05D006304 ORTHO05D008584 6.0e-140 502.7 533 54.4
SalBow5G3794 Salvia bowleyana HOM05D006304 ORTHO05D008584 7.8e-140 502.3 959 39.3
Thecc.03G080300 Theobroma cacao HOM05D006304 ORTHO05D008584 1.0e-139 501.9 480 58.5
Nitab4.5_0009895g0010 Nicotiana tabacum HOM05D006304 ORTHO05D008584 2.3e-139 500.7 934 41.5
TWI60G1649 Tripterygium wilfordii HOM05D006304 ORTHO05D008584 8.7e-139 498.8 424 61.8
FAN08G3028 Fragaria x ananassa HOM05D006304 ORTHO05D008584 1.5e-138 498.0 582 51.7
Gohir.A12G175370 Gossypium hirsutum HOM05D006304 ORTHO05D008584 1.6e-137 494.6 545 55.8
FAN04G3159 Fragaria x ananassa HOM05D006304 ORTHO05D008584 6.2e-137 492.7 907 41.0
ClCG01G014430 Citrullus lanatus HOM05D006304 ORTHO05D008584 5.3e-136 489.6 1038 37.6
Potri.015G064600 Populus trichocarpa HOM05D006304 ORTHO05D008584 5.3e-136 489.6 413 62.5
Eucgr.B00434 Eucalyptus grandis HOM05D006304 ORTHO05D008584 6.9e-136 489.2 559 53.5
FAN18G3228 Fragaria x ananassa HOM05D006304 ORTHO05D008584 2.0e-135 487.6 959 39.1
CAN.G628.40 Capsicum annuum HOM05D006304 ORTHO05D008584 2.9e-134 483.8 943 40.4
Sabra15G0090300 Salix brachista HOM05D006304 ORTHO05D008584 4.2e-133 479.9 416 60.8
COL.COLO4_05911 Corchorus olitorius HOM05D006304 ORTHO05D008584 2.7e-132 477.2 456 58.3
SGA_v2.0_scaffold56G20049 Striga asiatica HOM05D006304 ORTHO05D008584 1.3e-131 474.9 924 39.8
PGR083G1524 Punica granatum HOM05D006304 ORTHO05D008584 3.7e-129 466.8 936 37.6
THA.LOC104821457 Tarenaya hassleriana HOM05D006304 ORTHO05D008584 4.8e-129 466.5 914 38.5
DCAR_021535 Daucus carota HOM05D006304 ORTHO05D008584 1.1e-128 465.3 904 38.4
Aqoxy3G00750 Aquilegia oxysepala HOM05D006304 ORTHO05D008584 2.4e-128 464.2 922 39.5
Solyc06g071040.4 Solanum lycopersicum HOM05D006304 ORTHO05D008584 1.5e-127 461.5 943 40.6
Atru.chr9.2307 Acer truncatum HOM05D006304 ORTHO05D008584 3.4e-127 460.3 477 57.0
Sp2g25930 Schrenkiella parvula HOM05D006304 ORTHO05D008584 4.9e-126 456.4 512 53.3
ECA247G4106 Erigeron canadensis HOM05D006304 ORTHO05D008584 8.4e-126 455.7 449 55.2
Manes.06G096000 Manihot esculenta HOM05D006304 ORTHO05D008584 1.1e-125 455.3 516 53.9
Thhalv10003777m.g Eutrema salsugineum HOM05D006304 ORTHO05D008584 9.3e-125 452.2 507 52.5
HanXRQChr02g0045271 Helianthus annuus HOM05D006304 ORTHO05D008584 2.7e-124 450.7 417 58.3
AT5G62760 Arabidopsis thaliana HOM05D006304 ORTHO05D008584 1.0e-123 448.7 395 60.3
CDE06G1311 Ceratophyllum demersum HOM05D006304 ORTHO05D008584 3.0e-123 447.2 491 53.8
CARHR276550 Cardamine hirsuta HOM05D006304 ORTHO05D008584 2.1e-121 441.0 467 53.3
FAN13G0685 Fragaria x ananassa HOM05D006304 ORTHO05D008584 2.1e-121 441.0 914 38.6
SEGI_29067 Sequoiadendron giganteum HOM05D006304 ORTHO05D008584 2.1e-121 441.0 467 54.4
ATR1120G178 Amborella trichopoda HOM05D006304 ORTHO05D008584 3.7e-121 440.3 500 53.0
Carub.0008s2349 Capsella rubella HOM05D006304 ORTHO05D008584 3.7e-121 440.3 400 60.0
Lsat_1_v5_gn_1_10941 Lactuca sativa HOM05D006304 ORTHO05D008584 1.4e-120 438.3 945 37.5
Os02g0215000 Oryza sativa ssp. japonica HOM05D006304 ORTHO05D008584 1.4e-120 438.3 507 50.5
AL8G39730 Arabidopsis lyrata HOM05D006304 ORTHO05D008584 1.2e-119 435.3 550 49.1
A06p29540 Brassica napus HOM05D006304 ORTHO05D008584 1.5e-119 434.9 388 60.6
BcaB02g09690 Brassica carinata HOM05D006304 ORTHO05D008584 7.6e-119 432.6 393 59.3
HPP92_021789 Vanilla planifolia HOM05D006304 ORTHO05D008584 7.6e-119 432.6 961 37.9
BcaC01g02519 Brassica carinata HOM05D006304 ORTHO05D008584 1.3e-118 431.8 387 59.9
C03p63960 Brassica napus HOM05D006304 ORTHO05D008584 3.8e-118 430.3 388 60.1
BraA06t25899Z Brassica rapa HOM05D006304 ORTHO05D008584 1.8e-115 421.4 412 57.0
Zm00001eb240230 Zea mays HOM05D006304 ORTHO05D008584 3.3e-114 417.2 542 47.0
unitig_0.g2536 Utricularia gibba HOM05D006304 ORTHO05D008584 4.3e-114 416.8 485 52.0
Peaxi162Scf00013g00025 Petunia axillaris HOM05D006304 ORTHO05D008584 1.6e-113 414.8 958 38.1
BolC3t18650H Brassica oleracea HOM05D006304 ORTHO05D008584 8.2e-113 412.5 415 55.9
Aa31LG11G920 Aethionema arabicum HOM05D006304 ORTHO05D008584 7.2e-109 399.4 429 54.1
Mapoly0068s0038 Marchantia polymorpha HOM05D006304 ORTHO05D008584 4.6e-108 396.7 414 53.4
PSO017G6991 Papaver somniferum HOM05D006304 ORTHO05D008584 1.4e-96 358.6 828 37.6
Lalb_Chr12g0196741 Lupinus albus HOM05D006304 ORTHO05D008584 3.4e-95 354.0 237 75.1
CSS0050297 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 6.5e-94 349.7 537 44.7
Oeu006477.2 Olea europaea HOM05D006304 ORTHO05D008584 7.2e-93 346.3 929 32.0
QL10p015696 Quercus lobata HOM05D006304 ORTHO05D008584 7.9e-92 342.8 674 41.1
CBR_g5693 Chara braunii HOM05D006304 ORTHO05D008584 1.3e-81 308.9 477 42.8
Duzib084G0195 Durio zibethinus HOM05D006304 ORTHO05D008584 1.6e-60 238.8 341 44.0
PGSC0003DMG402033036 Solanum tuberosum HOM05D006304 ORTHO05D008584 4.3e-45 187.6 632 35.4
Cre14.g629400 Chlamydomonas reinhardtii HOM05D006304 ORTHO05D008584 1.5e-37 162.5 200 43.0
Actinidia28212 Actinidia chinensis HOM05D006304 ORTHO05D008584 1.3e-33 149.4 188 48.9
Lalb_Chr12g0196731 Lupinus albus HOM05D006304 ORTHO05D008584 1.6e-31 142.5 112 61.6
QL10p015692 Quercus lobata HOM05D006304 ORTHO05D008584 3.5e-31 141.4 107 61.7
CSS0027196 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 8.4e-17 93.6 82 61.0
QL10p015689 Quercus lobata HOM05D006304 ORTHO05D008584 5.4e-16 90.9 82 59.8
Dinv19922 Davidia involucrata HOM05D006304 ORTHO05D008584 2.7e-15 88.6 150 42.7
CSS0027880 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 3.2e-08 65.1 133 37.6
Duzib084G1176 Durio zibethinus HOM05D006304 ORTHO05D008584 7.9e-07 60.5 66 45.5
Dinv19923 Davidia involucrata HOM05D006304 ORTHO05D008584 6.7e-06 57.4 74 47.3


User provided reference genes

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